Wall clock time and date at job start Mon Mar 30 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.53002 * 109.47425 * 120.00610 * 2 1 3 5 5 N 1.46897 * 109.47143 * 174.99919 * 4 2 1 6 6 C 1.48060 * 110.99796 * 302.60520 * 5 4 2 7 7 C 1.53704 * 112.46849 * 192.19967 * 6 5 4 8 8 C 1.50799 * 112.10396 * 318.55361 * 7 6 5 9 9 N 1.47913 * 108.49790 * 92.54884 * 8 7 6 10 10 C 1.40017 * 114.06588 * 280.07943 * 9 8 7 11 11 C 1.44576 * 110.99887 * 174.92010 * 5 4 2 12 12 H 1.09002 * 109.57265 * 100.53638 * 11 5 4 13 13 C 1.50698 * 109.67699 * 340.21952 * 11 5 4 14 14 H 1.07999 * 120.00531 * 295.35932 * 13 11 5 15 15 C 1.37884 * 120.00050 * 115.36740 * 13 11 5 16 16 N 1.31511 * 120.00094 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 119.99925 * 359.97438 * 15 13 11 18 18 H 1.48498 * 109.47127 * 89.99856 * 17 15 13 19 19 H 1.48502 * 109.47194 * 210.00435 * 17 15 13 20 20 H 1.48502 * 109.46986 * 330.00187 * 17 15 13 21 21 H 1.09009 * 109.46757 * 299.99631 * 1 2 3 22 22 H 1.08999 * 109.47426 * 59.99243 * 1 2 3 23 23 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46757 * 240.00368 * 2 1 3 25 25 H 1.09002 * 109.47048 * 60.00073 * 3 2 1 26 26 H 1.09002 * 109.47788 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47449 * 300.00743 * 3 2 1 28 28 H 1.08997 * 109.46747 * 54.99335 * 4 2 1 29 29 H 1.09003 * 109.46800 * 294.99700 * 4 2 1 30 30 H 1.09001 * 108.88513 * 312.97325 * 6 5 4 31 31 H 1.09007 * 108.88342 * 71.53567 * 6 5 4 32 32 H 1.09003 * 108.95335 * 197.87412 * 7 6 5 33 33 H 1.09000 * 108.95365 * 79.23691 * 7 6 5 34 34 H 1.09001 * 109.63215 * 332.84136 * 8 7 6 35 35 H 1.09004 * 109.63162 * 212.25286 * 8 7 6 36 36 H 1.00894 * 110.99739 * 153.79342 * 9 8 7 37 37 H 1.08998 * 108.95613 * 182.47721 * 10 9 8 38 38 H 1.08993 * 108.95955 * 301.22537 * 10 9 8 39 39 H 0.96995 * 119.99894 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5041 -0.8268 1.1902 6 6 3.9362 -1.5327 -0.0374 7 6 5.4212 -1.9273 0.0038 8 6 6.2828 -0.8343 0.5842 9 7 6.4228 -1.0692 2.0379 10 6 5.3225 -0.6457 2.7932 11 6 4.0319 -1.3973 2.4093 12 1 4.2568 -2.4521 2.2513 13 6 3.0181 -1.2575 3.5155 14 1 2.7334 -0.2765 3.8663 15 6 2.4541 -2.3819 4.0800 16 7 1.5698 -2.2599 5.0457 17 14 2.9462 -4.0787 3.4731 18 1 4.1061 -4.5688 4.2601 19 1 1.8047 -5.0140 3.6388 20 1 3.3189 -4.0020 2.0376 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 1.7517 -0.1585 2.1369 30 1 3.3348 -2.4340 -0.1563 31 1 3.7693 -0.8819 -0.8958 32 1 5.7583 -2.1433 -1.0101 33 1 5.5320 -2.8258 0.6108 34 1 5.8114 0.1335 0.4132 35 1 7.2659 -0.8542 0.1137 36 1 7.2787 -0.6662 2.3885 37 1 5.5310 -0.8166 3.8493 38 1 5.1709 0.4214 2.6306 39 1 1.1728 -3.0509 5.4426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219514887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:19 Heat of formation + Delta-G solvation = -18.732249 kcal Electronic energy + Delta-G solvation = -17346.035090 eV Core-core repulsion = 14901.372254 eV Total energy + Delta-G solvation = -2444.662836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33482 -37.38520 -35.28340 -34.34435 -33.12463 -29.23426 -27.91107 -27.68096 -25.48053 -24.74445 -21.68043 -21.07875 -19.98015 -19.11130 -17.53437 -16.64540 -16.15161 -16.01788 -15.68092 -15.60753 -15.02166 -14.77390 -14.32975 -13.93264 -13.49707 -13.30616 -13.08818 -13.02027 -12.83956 -12.69059 -12.28590 -11.97927 -11.94151 -11.88136 -11.72535 -11.45568 -11.34849 -11.04993 -10.92950 -10.77140 -9.13054 -8.72899 -8.33942 -6.34585 1.24466 1.26970 1.34849 2.26008 2.94953 3.36832 3.57038 4.04835 4.12733 4.21010 4.26556 4.35216 4.50822 4.55950 4.66630 4.74456 4.81670 4.85603 4.89858 4.95924 5.01168 5.09181 5.11370 5.19070 5.22422 5.25962 5.34846 5.38672 5.48006 5.54196 5.61391 5.69074 6.13535 6.45758 6.52540 6.74423 6.81482 6.92435 7.30721 8.82138 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.015024 C = 0.010101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.563188 B = 1863.184061 C = 2771.331558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.123 4.123 4 C 0.099 3.901 5 N -0.544 5.544 6 C 0.055 3.945 7 C -0.119 4.119 8 C 0.078 3.922 9 N -0.710 5.710 10 C 0.104 3.896 11 C 0.184 3.816 12 H 0.015 0.985 13 C -0.499 4.499 14 H 0.038 0.962 15 C 0.027 3.973 16 N -0.938 5.938 17 Si 0.932 3.068 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.263 1.263 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.065 0.935 28 H -0.011 1.011 29 H 0.055 0.945 30 H 0.004 0.996 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.349 0.651 37 H 0.049 0.951 38 H 0.004 0.996 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 2.903 -12.872 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.180 4.180 4 C -0.029 4.029 5 N -0.269 5.269 6 C -0.072 4.072 7 C -0.157 4.157 8 C -0.050 4.050 9 N -0.343 5.343 10 C -0.028 4.028 11 C 0.076 3.924 12 H 0.033 0.967 13 C -0.538 4.538 14 H 0.056 0.944 15 C -0.172 4.172 16 N -0.579 5.579 17 Si 0.758 3.242 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.188 1.188 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.169 0.831 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.534 2.644 -12.820 14.212 hybrid contribution -0.503 -0.868 0.669 1.205 sum 5.031 1.777 -12.151 13.271 Atomic orbital electron populations 1.21767 0.94896 1.01211 1.01970 1.21259 0.95635 0.97363 0.97183 1.21573 1.01169 0.94574 1.00699 1.21733 0.87242 0.96404 0.97483 1.61090 1.09542 1.54105 1.02194 1.22501 0.95704 0.95504 0.93492 1.21491 0.93652 0.98901 1.01631 1.21573 0.99610 0.97034 0.86815 1.57703 1.05368 1.66970 1.04230 1.20633 0.90791 0.95685 0.95702 1.19495 0.92258 0.93153 0.87514 0.96697 1.21042 1.22348 0.93082 1.17339 0.94379 1.25702 0.94603 1.02108 0.94811 1.70007 1.30024 1.30725 1.27106 0.85974 0.77937 0.80764 0.79513 1.19301 1.21441 1.18766 0.93746 0.90498 0.93768 0.91018 0.94516 0.92735 0.91626 0.99301 0.92616 0.97814 0.89788 0.88700 0.93881 0.94290 0.88850 0.83060 0.93291 0.97791 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.19 71.98 0.66 -3.50 16 2 C -0.10 -3.13 2.65 -10.79 -0.03 -3.15 16 3 C -0.12 -3.65 9.08 71.98 0.65 -3.00 16 4 C 0.10 4.29 3.37 86.30 0.29 4.58 16 5 N -0.54 -22.67 3.45 -874.10 -3.02 -25.69 16 6 C 0.06 1.93 4.64 86.32 0.40 2.33 16 7 C -0.12 -3.62 5.36 30.12 0.16 -3.46 16 8 C 0.08 2.22 6.23 85.39 0.53 2.75 16 9 N -0.71 -23.87 6.21 -528.25 -3.28 -27.15 16 10 C 0.10 4.35 5.51 87.95 0.48 4.83 16 11 C 0.18 8.72 1.92 45.01 0.09 8.80 16 12 H 0.02 0.77 3.30 -2.39 -0.01 0.76 16 13 C -0.50 -28.11 6.24 25.60 0.16 -27.95 16 14 H 0.04 2.40 7.63 -2.91 -0.02 2.38 16 15 C 0.03 1.54 5.47 84.66 0.46 2.00 16 16 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 17 Si 0.93 46.17 27.27 68.60 1.87 48.04 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.26 -12.71 6.35 99.48 0.63 -12.08 16 21 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 2.16 6.35 -2.38 -0.02 2.15 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H -0.01 -0.55 8.12 -2.39 -0.02 -0.57 16 29 H 0.06 2.82 6.23 -2.39 -0.01 2.80 16 30 H 0.00 0.13 8.03 -2.39 -0.02 0.12 16 31 H 0.08 2.50 6.83 -2.38 -0.02 2.49 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.54 7.23 -2.39 -0.02 1.52 16 34 H 0.04 1.19 7.57 -2.39 -0.02 1.17 16 35 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.35 9.64 8.85 -89.70 -0.79 8.84 16 37 H 0.05 2.17 7.98 -2.39 -0.02 2.15 16 38 H 0.00 0.17 8.06 -2.39 -0.02 0.15 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -64.11 290.35 -0.13 -64.23 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.14 Total: 14.10 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 3.87 Total: -15.76 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -6.00 Total: -110.62 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.87 Total: 48.04 kcal Total: -64.11 -0.13 -64.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.501 kcal (2) G-P(sol) polarization free energy of solvation -64.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds