Wall clock time and date at job start Mon Mar 30 2020 03:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46720 * 2 1 4 4 C 1.53001 * 109.47000 * 240.00070 * 2 1 3 5 5 N 1.46897 * 109.46758 * 119.99829 * 2 1 3 6 6 C 1.48068 * 111.00174 * 76.21479 * 5 2 1 7 7 C 1.53700 * 112.46776 * 192.18843 * 6 5 2 8 8 C 1.50804 * 112.09572 * 318.55471 * 7 6 5 9 9 N 1.47912 * 108.49142 * 92.55755 * 8 7 6 10 10 C 1.40009 * 114.07553 * 280.05686 * 9 8 7 11 11 C 1.44567 * 111.00264 * 308.51006 * 5 2 1 12 12 H 1.09001 * 109.57163 * 100.53904 * 11 5 2 13 13 C 1.50701 * 109.57399 * 340.16710 * 11 5 2 14 14 H 1.07995 * 119.99606 * 20.22180 * 13 11 5 15 15 C 1.37879 * 119.99953 * 200.21297 * 13 11 5 16 16 N 1.31517 * 119.99877 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 120.00328 * 0.02562 * 15 13 11 18 18 H 1.48501 * 109.47002 * 89.99540 * 17 15 13 19 19 H 1.48499 * 109.47424 * 209.99905 * 17 15 13 20 20 H 1.48502 * 109.47070 * 329.99909 * 17 15 13 21 21 H 1.09005 * 109.47428 * 275.45961 * 1 2 3 22 22 H 1.08996 * 109.47742 * 35.46381 * 1 2 3 23 23 H 1.09007 * 109.46930 * 155.46408 * 1 2 3 24 24 H 1.09007 * 109.46856 * 213.54838 * 3 2 1 25 25 H 1.08999 * 109.47644 * 333.54534 * 3 2 1 26 26 H 1.08996 * 109.47631 * 93.54719 * 3 2 1 27 27 H 1.09002 * 109.46695 * 299.99621 * 4 2 1 28 28 H 1.08995 * 109.47088 * 59.99951 * 4 2 1 29 29 H 1.09000 * 109.46780 * 180.02562 * 4 2 1 30 30 H 1.09001 * 108.88780 * 71.41843 * 6 5 2 31 31 H 1.09004 * 108.80198 * 312.90511 * 6 5 2 32 32 H 1.09000 * 108.95608 * 197.88059 * 7 6 5 33 33 H 1.09005 * 108.94999 * 79.22899 * 7 6 5 34 34 H 1.09000 * 109.63354 * 332.85938 * 8 7 6 35 35 H 1.08993 * 109.79847 * 212.35516 * 8 7 6 36 36 H 1.00901 * 110.99482 * 153.75817 * 9 8 7 37 37 H 1.08993 * 108.96254 * 182.47677 * 10 9 8 38 38 H 1.09006 * 108.95640 * 301.13849 * 10 9 8 39 39 H 0.96998 * 120.00058 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1995 6 6 1.8859 -2.1602 1.0566 7 6 2.1020 -2.9017 2.3854 8 6 3.2493 -2.3255 3.1766 9 7 2.7139 -1.3054 4.1042 10 6 2.4632 -0.0647 3.5058 11 6 1.4000 -0.1621 2.3931 12 1 0.5965 -0.8256 2.7130 13 6 0.8424 1.2082 2.1063 14 1 0.6448 1.5084 1.0879 15 6 0.5843 2.0786 3.1441 16 7 0.0972 3.2743 2.8938 17 14 0.9265 1.5594 4.9055 18 1 2.3177 1.9300 5.2694 19 1 -0.0233 2.2461 5.8174 20 1 0.7572 0.0894 5.0301 21 1 -0.3634 0.0978 1.0230 22 1 -0.3634 0.8370 -0.5962 23 1 -0.3633 -0.9349 -0.4268 24 1 2.9686 1.4996 -0.5680 25 1 1.2936 2.0918 -0.4578 26 1 2.2210 1.7639 1.0256 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7216 -1.2490 30 1 2.6205 -2.5126 0.3325 31 1 0.8870 -2.3873 0.6842 32 1 2.3084 -3.9513 2.1757 33 1 1.1916 -2.8336 2.9810 34 1 3.9663 -1.8632 2.4981 35 1 3.7397 -3.1158 3.7448 36 1 3.3094 -1.2034 4.9123 37 1 2.1154 0.6324 4.2680 38 1 3.3905 0.3155 3.0771 39 1 -0.0847 3.8865 3.6239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219515255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:25 Heat of formation + Delta-G solvation = 90.974367 kcal Electronic energy + Delta-G solvation = -17970.880525 eV Core-core repulsion = 15530.974925 eV Total energy + Delta-G solvation = -2439.905600 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66559 -36.39548 -33.52662 -31.89927 -30.93210 -28.22477 -26.35997 -26.18815 -24.67331 -23.05456 -20.46466 -19.96174 -17.63968 -16.95434 -16.46021 -15.02329 -14.55535 -14.23798 -14.08244 -13.98909 -13.28821 -13.09017 -12.40947 -12.23518 -11.89406 -11.65531 -11.38136 -11.14316 -10.94907 -10.80542 -10.66559 -10.37062 -10.27615 -10.15812 -10.06314 -9.90688 -9.53920 -8.81810 -8.49317 -8.17566 -7.68182 -7.12078 -6.04512 -3.99318 3.28301 3.48235 3.54153 4.39955 4.73472 4.86654 5.24508 5.37380 5.59206 5.64359 5.78083 5.83916 5.94855 6.02571 6.11809 6.20989 6.28879 6.32236 6.40066 6.44013 6.49712 6.54358 6.61163 6.69775 6.75297 6.92135 6.98986 7.02771 7.21303 7.40244 7.57007 7.74970 7.84537 8.10364 8.17181 8.37359 8.73378 9.01282 9.52220 11.01730 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.016665 C = 0.010790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.516999 B = 1679.728526 C = 2594.411729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.145 4.145 4 C -0.141 4.141 5 N -0.534 5.534 6 C 0.061 3.939 7 C -0.119 4.119 8 C 0.076 3.924 9 N -0.702 5.702 10 C 0.075 3.925 11 C 0.200 3.800 12 H 0.012 0.988 13 C -0.546 4.546 14 H 0.132 0.868 15 C 0.066 3.934 16 N -0.893 5.893 17 Si 0.900 3.100 18 H -0.294 1.294 19 H -0.313 1.313 20 H -0.253 1.253 21 H 0.106 0.894 22 H 0.047 0.953 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.044 0.956 26 H 0.123 0.877 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.329 0.671 37 H 0.044 0.956 38 H 0.021 0.979 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -9.179 -2.454 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.039 3.961 3 C -0.202 4.202 4 C -0.199 4.199 5 N -0.260 5.260 6 C -0.067 4.067 7 C -0.158 4.158 8 C -0.052 4.052 9 N -0.333 5.333 10 C -0.054 4.054 11 C 0.091 3.909 12 H 0.030 0.970 13 C -0.583 4.583 14 H 0.149 0.851 15 C -0.137 4.137 16 N -0.531 5.531 17 Si 0.735 3.265 18 H -0.224 1.224 19 H -0.243 1.243 20 H -0.178 1.178 21 H 0.124 0.876 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.063 0.937 26 H 0.141 0.859 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.399 -9.122 -2.472 10.425 hybrid contribution 0.266 0.018 0.853 0.894 sum 4.665 -9.104 -1.619 10.357 Atomic orbital electron populations 1.23094 0.96947 0.98594 1.05622 1.20687 0.92568 0.94800 0.88069 1.22743 0.97411 0.93754 1.06273 1.22081 1.00803 0.99440 0.97550 1.61042 1.60391 1.01482 1.03040 1.22333 0.98633 0.89425 0.96264 1.21450 1.00112 0.97757 0.96452 1.21485 0.95740 0.93762 0.94209 1.57753 1.52856 1.11766 1.10876 1.21406 0.99280 0.88342 0.96417 1.19314 0.89986 0.95923 0.85679 0.97044 1.22452 1.40922 0.96768 0.98196 0.85098 1.25143 0.94841 0.94907 0.98785 1.69857 1.44076 1.06707 1.32428 0.86583 0.75336 0.79549 0.84993 1.22434 1.24334 1.17774 0.87553 0.93413 0.95968 0.96516 0.93725 0.85904 0.93533 0.93209 0.92842 0.92347 0.95658 0.92368 0.91139 0.93653 0.92446 0.85311 0.93885 0.96089 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 7.10 37.16 0.26 -3.52 16 2 C 0.13 2.54 0.69 -131.60 -0.09 2.45 16 3 C -0.15 -3.12 7.74 37.16 0.29 -2.83 16 4 C -0.14 -2.34 7.37 37.16 0.27 -2.07 16 5 N -0.53 -10.90 3.75 -212.07 -0.80 -11.70 16 6 C 0.06 1.07 4.12 -2.82 -0.01 1.06 16 7 C -0.12 -1.94 5.36 -27.47 -0.15 -2.08 16 8 C 0.08 1.25 6.23 -4.37 -0.03 1.22 16 9 N -0.70 -13.37 6.02 -118.32 -0.71 -14.09 16 10 C 0.08 1.68 4.17 -6.75 -0.03 1.65 16 11 C 0.20 4.61 0.96 -69.48 -0.07 4.55 16 12 H 0.01 0.30 6.79 -51.93 -0.35 -0.05 16 13 C -0.55 -14.13 4.36 -34.44 -0.15 -14.28 16 14 H 0.13 3.43 2.54 -56.21 -0.14 3.29 16 15 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16 16 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 17 Si 0.90 22.26 24.31 -169.99 -4.13 18.13 16 18 H -0.29 -7.22 7.01 56.52 0.40 -6.83 16 19 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 20 H -0.25 -6.12 6.18 56.52 0.35 -5.77 16 21 H 0.11 2.51 4.68 -51.93 -0.24 2.27 16 22 H 0.05 0.97 7.43 -51.93 -0.39 0.58 16 23 H 0.02 0.40 7.47 -51.92 -0.39 0.02 16 24 H 0.02 0.32 7.77 -51.92 -0.40 -0.09 16 25 H 0.04 0.97 7.01 -51.93 -0.36 0.60 16 26 H 0.12 3.07 4.94 -51.93 -0.26 2.81 16 27 H 0.05 0.72 6.43 -51.93 -0.33 0.38 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.06 0.93 7.00 -51.93 -0.36 0.57 16 31 H 0.03 0.45 6.92 -51.93 -0.36 0.09 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.28 7.23 -51.93 -0.38 0.90 16 34 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.33 5.57 8.85 -39.29 -0.35 5.22 16 37 H 0.04 1.04 0.71 -51.93 -0.04 1.01 16 38 H 0.02 0.48 8.07 -51.93 -0.42 0.07 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 264.16 15.07 3.98 3.98 Total: -1.00 -27.98 264.16 -6.73 -34.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.05 Total: 6.41 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 0.21 Total: -12.15 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.73 Total: -51.08 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.13 Total: 18.13 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.98 -6.73 -34.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219515255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.684 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds