Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48067 * 110.99999 * 2 1 4 4 C 1.53913 * 112.60703 * 192.08875 * 3 2 1 5 5 C 1.50802 * 111.98044 * 318.84142 * 4 3 2 6 6 C 1.53004 * 109.63195 * 332.53261 * 5 4 3 7 7 C 1.53002 * 109.63244 * 212.13926 * 5 4 3 8 8 N 1.47909 * 108.66681 * 92.33225 * 5 4 3 9 9 C 1.46895 * 111.00112 * 153.69474 * 8 5 4 10 10 C 1.40018 * 114.06806 * 279.98449 * 8 5 4 11 11 C 1.44569 * 111.00523 * 232.31121 * 2 1 3 12 12 H 1.09005 * 109.57876 * 100.53367 * 11 2 1 13 13 C 1.50703 * 109.67467 * 340.21915 * 11 2 1 14 14 H 1.07995 * 120.00040 * 298.81228 * 13 11 2 15 15 C 1.37880 * 119.99873 * 118.81760 * 13 11 2 16 16 N 1.31508 * 120.00371 * 173.87864 * 15 13 11 17 17 Si 1.86807 * 119.99851 * 353.87297 * 15 13 11 18 18 H 1.48494 * 109.47110 * 84.69194 * 17 15 13 19 19 H 1.48507 * 109.46936 * 204.69314 * 17 15 13 20 20 H 1.48504 * 109.46931 * 324.68795 * 17 15 13 21 21 H 1.09006 * 109.47255 * 194.34560 * 1 2 3 22 22 H 1.09000 * 109.47611 * 314.34821 * 1 2 3 23 23 H 1.09002 * 109.47157 * 74.35127 * 1 2 3 24 24 H 1.08996 * 108.88146 * 312.97229 * 3 2 1 25 25 H 1.09004 * 108.88302 * 71.52354 * 3 2 1 26 26 H 1.08999 * 109.26611 * 198.03744 * 4 3 2 27 27 H 1.08998 * 108.76528 * 79.31087 * 4 3 2 28 28 H 1.09004 * 109.47033 * 308.66689 * 6 5 4 29 29 H 1.09006 * 109.47000 * 188.67648 * 6 5 4 30 30 H 1.08997 * 109.47781 * 68.67153 * 6 5 4 31 31 H 1.09005 * 109.46969 * 180.39592 * 7 5 4 32 32 H 1.08996 * 109.46497 * 300.39072 * 7 5 4 33 33 H 1.08990 * 109.47333 * 60.39528 * 7 5 4 34 34 H 1.08993 * 109.47270 * 60.00124 * 9 8 5 35 35 H 1.09004 * 109.47026 * 180.02562 * 9 8 5 36 36 H 1.08998 * 109.46876 * 299.99927 * 9 8 5 37 37 H 1.08996 * 108.95974 * 182.47032 * 10 8 5 38 38 H 1.09005 * 108.95559 * 301.13505 * 10 8 5 39 39 H 0.96998 * 120.00486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9995 1.3823 0.0000 4 6 3.5087 1.4368 -0.2976 5 6 4.2632 0.3385 0.4085 6 6 3.5157 -0.0622 1.6820 7 6 5.6669 0.8288 0.7692 8 7 4.3612 -0.8266 -0.4975 9 6 5.5406 -1.6427 -0.1798 10 6 3.2040 -1.6135 -0.5430 11 6 1.9871 -0.8251 -1.0680 12 1 2.2934 -0.1934 -1.9019 13 6 0.9224 -1.7874 -1.5280 14 1 0.5144 -2.5113 -0.8383 15 6 0.4694 -1.7436 -2.8295 16 7 -0.3698 -2.6577 -3.2649 17 14 1.0474 -0.3854 -3.9745 18 1 2.3462 -0.7703 -4.5829 19 1 0.0403 -0.1795 -5.0463 20 1 1.2151 0.8732 -3.2044 21 1 -0.3634 -0.9957 0.2546 22 1 -0.3634 0.7183 0.7349 23 1 -0.3633 0.2772 -0.9896 24 1 1.4697 1.9635 -0.7546 25 1 1.8208 1.8288 0.9782 26 1 3.9039 2.4006 0.0232 27 1 3.6580 1.3345 -1.3724 28 1 3.2972 0.8288 2.2706 29 1 4.1345 -0.7419 2.2679 30 1 2.5830 -0.5590 1.4149 31 1 6.2122 0.0307 1.2730 32 1 6.1969 1.1134 -0.1397 33 1 5.5915 1.6914 1.4311 34 1 5.4674 -2.0031 0.8462 35 1 5.5888 -2.4922 -0.8611 36 1 6.4409 -1.0381 -0.2893 37 1 3.3817 -2.4672 -1.1970 38 1 2.9838 -1.9778 0.4604 39 1 -0.6888 -2.6267 -4.1803 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219517128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = 33.863074 kcal Electronic energy + Delta-G solvation = -17747.696622 eV Core-core repulsion = 15305.314491 eV Total energy + Delta-G solvation = -2442.382132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84563 -35.92744 -33.61552 -32.08738 -29.22292 -28.78446 -27.14833 -25.22426 -24.71445 -22.93958 -22.22156 -18.81217 -17.80438 -17.09623 -15.86038 -15.08274 -14.76132 -14.47155 -14.08421 -13.44474 -13.23429 -12.96012 -12.60718 -12.20323 -11.90287 -11.84394 -11.76473 -11.32405 -11.22081 -11.13497 -10.87361 -10.64685 -10.41193 -10.31598 -10.08755 -9.90606 -9.88496 -9.67767 -9.03547 -8.63811 -7.45015 -6.93452 -6.15127 -4.14622 3.27147 3.34011 3.37235 4.36667 4.54594 4.88069 5.23803 5.26655 5.33601 5.67118 5.71177 5.76029 5.87339 5.91133 5.99626 6.07621 6.16615 6.25284 6.26731 6.31406 6.36843 6.39189 6.50090 6.57585 6.61742 6.70916 6.81527 6.85718 7.20548 7.25462 7.38548 7.49162 7.85271 8.09898 8.17870 8.34402 8.69533 8.91856 9.48847 10.97069 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.011357 C = 0.010542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.139120 B = 2464.742517 C = 2655.473035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.549 5.549 3 C 0.060 3.940 4 C -0.108 4.108 5 C 0.124 3.876 6 C -0.196 4.196 7 C -0.144 4.144 8 N -0.549 5.549 9 C 0.029 3.971 10 C 0.080 3.920 11 C 0.185 3.815 12 H 0.025 0.975 13 C -0.511 4.511 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.893 5.893 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.291 1.291 20 H -0.271 1.271 21 H 0.072 0.928 22 H 0.028 0.972 23 H 0.024 0.976 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.128 0.872 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.018 0.982 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 6.795 6.613 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.274 5.274 3 C -0.068 4.068 4 C -0.146 4.146 5 C 0.035 3.965 6 C -0.254 4.254 7 C -0.201 4.201 8 N -0.273 5.273 9 C -0.119 4.119 10 C -0.049 4.049 11 C 0.078 3.922 12 H 0.043 0.957 13 C -0.550 4.550 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.218 1.218 20 H -0.196 1.196 21 H 0.091 0.909 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.146 0.854 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.611 6.698 6.400 12.648 hybrid contribution -0.042 0.753 -0.705 1.032 sum 8.569 7.451 5.696 12.703 Atomic orbital electron populations 1.21937 0.87504 1.00995 0.98210 1.61282 1.07673 1.09525 1.48909 1.22333 0.94134 0.91143 0.99171 1.21495 0.94514 0.97192 1.01418 1.20541 0.93873 0.90912 0.91172 1.22977 1.04802 1.01287 0.96325 1.22094 0.96585 1.00556 1.00886 1.59652 1.04761 1.10804 1.52061 1.22352 0.93912 0.97089 0.98529 1.21235 0.89003 0.95528 0.99173 1.19550 0.92556 0.91714 0.88360 0.95706 1.20925 1.20122 1.17285 0.96641 0.90340 1.25052 0.94499 0.95364 0.97661 1.69890 1.32536 1.33567 1.16996 0.86877 0.78722 0.83328 0.80676 1.19842 1.21754 1.19595 0.90893 0.95312 0.95704 0.96050 0.92455 0.92126 0.91505 0.93769 0.95312 0.85389 0.92691 0.92479 0.92806 0.96328 0.92177 0.92019 0.91522 0.95830 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.29 8.48 60.06 0.51 1.80 16 2 N -0.55 -11.50 2.11 -235.75 -0.50 -12.00 16 3 C 0.06 1.10 4.64 -2.70 -0.01 1.09 16 4 C -0.11 -1.85 4.80 -27.36 -0.13 -1.98 16 5 C 0.12 2.05 0.72 -132.14 -0.09 1.95 16 6 C -0.20 -3.27 6.69 37.16 0.25 -3.03 16 7 C -0.14 -1.94 7.06 37.16 0.26 -1.68 16 8 N -0.55 -10.20 4.24 -232.28 -0.98 -11.19 16 9 C 0.03 0.45 8.30 60.06 0.50 0.95 16 10 C 0.08 1.72 4.20 -6.75 -0.03 1.69 16 11 C 0.19 4.33 1.92 -69.48 -0.13 4.20 16 12 H 0.03 0.63 3.58 -51.93 -0.19 0.44 16 13 C -0.51 -13.74 6.27 -34.44 -0.22 -13.96 16 14 H 0.08 2.31 7.58 -52.49 -0.40 1.91 16 15 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 16 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 17 Si 0.88 21.82 26.96 -169.99 -4.58 17.23 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.27 -6.65 6.78 56.52 0.38 -6.26 16 21 H 0.07 1.63 6.90 -51.93 -0.36 1.27 16 22 H 0.03 0.51 8.02 -51.93 -0.42 0.10 16 23 H 0.02 0.56 7.68 -51.93 -0.40 0.17 16 24 H 0.02 0.41 8.03 -51.93 -0.42 -0.01 16 25 H 0.06 0.95 7.60 -51.93 -0.39 0.55 16 26 H 0.06 0.88 7.71 -51.93 -0.40 0.48 16 27 H 0.07 1.28 7.24 -51.93 -0.38 0.90 16 28 H 0.04 0.68 7.64 -51.93 -0.40 0.28 16 29 H 0.03 0.46 7.83 -51.93 -0.41 0.05 16 30 H 0.13 2.48 3.64 -51.93 -0.19 2.29 16 31 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 32 H 0.06 0.75 8.00 -51.93 -0.42 0.34 16 33 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.02 0.28 7.70 -51.93 -0.40 -0.12 16 35 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 37 H 0.07 1.51 7.69 -51.93 -0.40 1.11 16 38 H 0.02 0.51 6.18 -51.93 -0.32 0.19 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 276.99 15.07 4.17 4.17 Total: -1.00 -28.33 276.99 -6.84 -35.16 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.53 Total: -0.80 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 0.81 Total: -6.88 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.71 Total: -48.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.58 Total: 17.23 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.33 -6.84 -35.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219517128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.027 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds