Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.44183 * 111.00166 * 2 1 4 4 C 1.54314 * 112.61737 * 217.52767 * 3 2 1 5 5 C 1.54323 * 111.72651 * 318.91786 * 4 3 2 6 6 C 1.52995 * 108.85383 * 198.12008 * 5 4 3 7 7 C 1.52997 * 108.85362 * 79.73055 * 5 4 3 8 8 N 1.44179 * 112.60876 * 318.92417 * 5 4 3 9 9 C 1.46894 * 111.00130 * 217.52619 * 8 5 4 10 10 C 1.48077 * 109.89781 * 94.35291 * 8 5 4 11 11 C 1.46091 * 112.16154 * 279.63468 * 10 8 5 12 12 H 1.09000 * 108.94593 * 300.08640 * 11 10 8 13 13 C 1.50699 * 108.94900 * 181.36936 * 11 10 8 14 14 H 1.08002 * 120.00015 * 272.53022 * 13 11 10 15 15 C 1.37881 * 119.99748 * 92.52991 * 13 11 10 16 16 N 1.31515 * 120.00157 * 359.20465 * 15 13 11 17 17 Si 1.86797 * 119.99833 * 179.20013 * 15 13 11 18 18 H 1.48500 * 109.47340 * 179.97438 * 17 15 13 19 19 H 1.48506 * 109.47141 * 59.99903 * 17 15 13 20 20 H 1.48506 * 109.47316 * 300.00199 * 17 15 13 21 21 H 1.08997 * 109.47275 * 290.02170 * 1 2 3 22 22 H 1.09007 * 109.47131 * 50.01654 * 1 2 3 23 23 H 1.09002 * 109.47364 * 170.01681 * 1 2 3 24 24 H 1.08997 * 108.84923 * 96.71971 * 3 2 1 25 25 H 1.08998 * 108.85414 * 338.33623 * 3 2 1 26 26 H 1.09002 * 109.02988 * 198.34034 * 4 3 2 27 27 H 1.08998 * 108.97114 * 79.45668 * 4 3 2 28 28 H 1.09003 * 109.46941 * 183.08986 * 6 5 4 29 29 H 1.09001 * 109.47027 * 303.08339 * 6 5 4 30 30 H 1.08998 * 109.47355 * 63.08596 * 6 5 4 31 31 H 1.09002 * 109.47429 * 304.04689 * 7 5 4 32 32 H 1.09008 * 109.46719 * 64.04079 * 7 5 4 33 33 H 1.08999 * 109.47180 * 184.04035 * 7 5 4 34 34 H 1.09008 * 109.46795 * 301.42173 * 9 8 5 35 35 H 1.09000 * 109.47326 * 61.41558 * 9 8 5 36 36 H 1.08996 * 109.47618 * 181.41997 * 9 8 5 37 37 H 1.08999 * 108.94817 * 158.93972 * 10 8 5 38 38 H 1.09010 * 108.94305 * 40.31979 * 10 8 5 39 39 H 0.96998 * 120.00046 * 354.25707 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.2531 1.4952 -0.8677 5 6 4.2081 0.2954 -0.6949 6 6 5.5980 0.6938 -1.1954 7 6 3.6957 -0.8705 -1.5428 8 7 4.3130 -0.1366 0.6766 9 6 5.6863 -0.5492 0.9951 10 6 3.3554 -1.2366 0.9331 11 6 1.9997 -0.7442 1.1651 12 1 2.0067 -0.0835 2.0320 13 6 1.0957 -1.9157 1.4505 14 1 0.6187 -2.4407 0.6361 15 6 0.8776 -2.3172 2.7514 16 7 1.4707 -1.6877 3.7421 17 14 -0.2605 -3.7552 3.1066 18 1 -0.3250 -3.9853 4.5722 19 1 0.2589 -4.9748 2.4370 20 1 -1.6199 -3.4494 2.5928 21 1 -0.3634 0.3518 0.9655 22 1 -0.3634 0.6604 -0.7875 23 1 -0.3634 -1.0121 -0.1782 24 1 2.2246 1.6315 1.0244 25 1 1.2170 2.0185 -0.3808 26 1 3.7744 2.4086 -0.5813 27 1 2.9591 1.5675 -1.9148 28 1 6.2676 -0.1638 -1.1290 29 1 5.5303 1.0224 -2.2325 30 1 5.9862 1.5064 -0.5814 31 1 2.6675 -1.0993 -1.2625 32 1 3.7324 -0.5965 -2.5973 33 1 4.3222 -1.7462 -1.3729 34 1 5.9865 -1.3578 0.3285 35 1 6.3597 0.2979 0.8648 36 1 5.7318 -0.8941 2.0281 37 1 3.6841 -1.7947 1.8097 38 1 3.3464 -1.9057 0.0726 39 1 2.1249 -0.9964 3.5551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219517215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = 37.779808 kcal Electronic energy + Delta-G solvation = -17668.833532 eV Core-core repulsion = 15226.621243 eV Total energy + Delta-G solvation = -2442.212289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74821 -36.12446 -33.59583 -31.74726 -29.46335 -28.79444 -26.75981 -24.80091 -24.56665 -23.09489 -21.93459 -19.45148 -17.67773 -16.72111 -16.13843 -14.87437 -14.67142 -14.25116 -13.81172 -13.67522 -13.19768 -12.65572 -12.38151 -12.22642 -11.99536 -11.80900 -11.61969 -11.22203 -11.08228 -10.84490 -10.78995 -10.55097 -10.40676 -10.35527 -10.13770 -10.01167 -9.70838 -9.65652 -8.47724 -8.42030 -7.43338 -7.05928 -6.37055 -4.11669 3.42116 3.42649 3.61862 4.46114 4.66181 5.02404 5.30638 5.32842 5.44128 5.61575 5.77970 5.78888 5.89173 6.00412 6.04847 6.11627 6.20827 6.25106 6.29471 6.33097 6.38199 6.46174 6.54575 6.66674 6.68162 6.74063 6.81014 6.94339 7.14518 7.29355 7.56010 7.77900 7.95740 8.01628 8.11137 8.49917 8.61038 8.86425 9.62229 10.99578 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033782 B = 0.010070 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.642038 B = 2779.783411 C = 3175.863146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.535 5.535 3 C 0.064 3.936 4 C -0.087 4.087 5 C 0.120 3.880 6 C -0.155 4.155 7 C -0.182 4.182 8 N -0.537 5.537 9 C 0.028 3.972 10 C 0.064 3.936 11 C 0.198 3.802 12 H 0.017 0.983 13 C -0.594 4.594 14 H 0.056 0.944 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 1.066 2.934 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 H 0.018 0.982 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.017 0.983 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 3.609 -7.981 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.260 5.260 3 C -0.066 4.066 4 C -0.126 4.126 5 C 0.029 3.971 6 C -0.212 4.212 7 C -0.241 4.241 8 N -0.261 5.261 9 C -0.121 4.121 10 C -0.062 4.062 11 C 0.092 3.908 12 H 0.035 0.965 13 C -0.634 4.634 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.546 5.546 17 Si 0.894 3.106 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.214 1.214 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.916 2.916 -6.855 8.416 hybrid contribution 0.804 0.616 -1.034 1.448 sum 4.719 3.532 -7.889 9.848 Atomic orbital electron populations 1.22061 0.88211 1.01316 0.97734 1.61600 1.07158 1.12186 1.45008 1.21693 0.95176 0.91132 0.98575 1.21973 0.95475 0.96319 0.98858 1.20554 0.93431 0.95043 0.88043 1.22340 0.97318 1.01149 1.00411 1.22819 1.05776 0.97332 0.98134 1.61983 1.04730 1.38171 1.21192 1.22438 0.91007 0.98561 1.00077 1.21641 0.92678 0.91509 1.00368 1.18452 0.91346 0.94067 0.86958 0.96503 1.21950 1.30945 1.15605 0.94885 0.92537 1.25812 0.99052 1.01018 0.92405 1.70777 1.26112 1.23774 1.33894 0.83584 0.75630 0.75216 0.76127 1.20881 1.21420 1.21435 0.96324 0.94848 0.91091 0.94727 0.93928 0.92966 0.92781 0.92685 0.93097 0.92534 0.86840 0.94437 0.94512 0.96476 0.91998 0.92268 0.92336 0.92988 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 8.51 60.06 0.51 1.66 16 2 N -0.54 -11.59 2.51 -240.69 -0.60 -12.19 16 3 C 0.06 1.25 5.28 -4.59 -0.02 1.23 16 4 C -0.09 -1.49 5.26 -25.35 -0.13 -1.62 16 5 C 0.12 2.09 0.80 -132.37 -0.11 1.99 16 6 C -0.15 -2.22 6.96 37.16 0.26 -1.96 16 7 C -0.18 -3.29 6.72 37.16 0.25 -3.04 16 8 N -0.54 -10.54 4.50 -231.37 -1.04 -11.59 16 9 C 0.03 0.47 8.18 60.06 0.49 0.96 16 10 C 0.06 1.47 4.00 -6.45 -0.03 1.44 16 11 C 0.20 4.87 1.57 -71.49 -0.11 4.76 16 12 H 0.02 0.48 5.63 -51.93 -0.29 0.19 16 13 C -0.59 -15.87 6.71 -34.44 -0.23 -16.10 16 14 H 0.06 1.52 6.78 -52.49 -0.36 1.17 16 15 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 16 N -0.91 -26.85 13.59 55.43 0.75 -26.09 16 17 Si 1.07 24.61 29.90 -169.99 -5.08 19.53 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 21 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 22 H 0.03 0.59 7.75 -51.92 -0.40 0.19 16 23 H 0.07 1.54 6.50 -51.93 -0.34 1.20 16 24 H 0.03 0.75 7.16 -51.93 -0.37 0.38 16 25 H 0.04 0.76 7.36 -51.93 -0.38 0.38 16 26 H 0.05 0.82 7.98 -51.93 -0.41 0.41 16 27 H 0.05 0.85 7.97 -51.93 -0.41 0.44 16 28 H 0.05 0.77 6.28 -51.93 -0.33 0.44 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.78 7.38 -51.93 -0.38 0.40 16 31 H 0.11 2.35 4.54 -51.93 -0.24 2.12 16 32 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.04 0.66 7.35 -51.93 -0.38 0.28 16 34 H 0.02 0.27 7.32 -51.92 -0.38 -0.11 16 35 H 0.06 0.92 6.30 -51.93 -0.33 0.59 16 36 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 37 H 0.06 1.46 7.72 -51.93 -0.40 1.06 16 38 H 0.05 1.19 4.60 -51.92 -0.24 0.96 16 39 H 0.27 8.13 6.59 -40.82 -0.27 7.86 16 LS Contribution 278.85 15.07 4.20 4.20 Total: -1.00 -28.14 278.85 -7.38 -35.52 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.39 Total: 0.79 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 0.78 Total: -10.17 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.89 Total: -49.87 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.14 -7.38 -35.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219517215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.304 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds