Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.44183 * 111.00166 * 2 1 4 4 C 1.54314 * 112.61737 * 217.52767 * 3 2 1 5 5 C 1.54323 * 111.72651 * 318.91786 * 4 3 2 6 6 C 1.52995 * 108.85383 * 198.12008 * 5 4 3 7 7 C 1.52997 * 108.85362 * 79.73055 * 5 4 3 8 8 N 1.44179 * 112.60876 * 318.92417 * 5 4 3 9 9 C 1.46894 * 111.00130 * 217.52619 * 8 5 4 10 10 C 1.48077 * 109.89781 * 94.35291 * 8 5 4 11 11 C 1.46091 * 112.16154 * 279.63468 * 10 8 5 12 12 H 1.09000 * 108.94593 * 300.08640 * 11 10 8 13 13 C 1.50699 * 108.94900 * 181.36936 * 11 10 8 14 14 H 1.08002 * 120.00015 * 272.53022 * 13 11 10 15 15 C 1.37881 * 119.99748 * 92.52991 * 13 11 10 16 16 N 1.31515 * 120.00157 * 359.20465 * 15 13 11 17 17 Si 1.86797 * 119.99833 * 179.20013 * 15 13 11 18 18 H 1.48500 * 109.47340 * 179.97438 * 17 15 13 19 19 H 1.48506 * 109.47141 * 59.99903 * 17 15 13 20 20 H 1.48506 * 109.47316 * 300.00199 * 17 15 13 21 21 H 1.08997 * 109.47275 * 290.02170 * 1 2 3 22 22 H 1.09007 * 109.47131 * 50.01654 * 1 2 3 23 23 H 1.09002 * 109.47364 * 170.01681 * 1 2 3 24 24 H 1.08997 * 108.84923 * 96.71971 * 3 2 1 25 25 H 1.08998 * 108.85414 * 338.33623 * 3 2 1 26 26 H 1.09002 * 109.02988 * 198.34034 * 4 3 2 27 27 H 1.08998 * 108.97114 * 79.45668 * 4 3 2 28 28 H 1.09003 * 109.46941 * 183.08986 * 6 5 4 29 29 H 1.09001 * 109.47027 * 303.08339 * 6 5 4 30 30 H 1.08998 * 109.47355 * 63.08596 * 6 5 4 31 31 H 1.09002 * 109.47429 * 304.04689 * 7 5 4 32 32 H 1.09008 * 109.46719 * 64.04079 * 7 5 4 33 33 H 1.08999 * 109.47180 * 184.04035 * 7 5 4 34 34 H 1.09008 * 109.46795 * 301.42173 * 9 8 5 35 35 H 1.09000 * 109.47326 * 61.41558 * 9 8 5 36 36 H 1.08996 * 109.47618 * 181.41997 * 9 8 5 37 37 H 1.08999 * 108.94817 * 158.93972 * 10 8 5 38 38 H 1.09010 * 108.94305 * 40.31979 * 10 8 5 39 39 H 0.96998 * 120.00046 * 354.25707 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.2531 1.4952 -0.8677 5 6 4.2081 0.2954 -0.6949 6 6 5.5980 0.6938 -1.1954 7 6 3.6957 -0.8705 -1.5428 8 7 4.3130 -0.1366 0.6766 9 6 5.6863 -0.5492 0.9951 10 6 3.3554 -1.2366 0.9331 11 6 1.9997 -0.7442 1.1651 12 1 2.0067 -0.0835 2.0320 13 6 1.0957 -1.9157 1.4505 14 1 0.6187 -2.4407 0.6361 15 6 0.8776 -2.3172 2.7514 16 7 1.4707 -1.6877 3.7421 17 14 -0.2605 -3.7552 3.1066 18 1 -0.3250 -3.9853 4.5722 19 1 0.2589 -4.9748 2.4370 20 1 -1.6199 -3.4494 2.5928 21 1 -0.3634 0.3518 0.9655 22 1 -0.3634 0.6604 -0.7875 23 1 -0.3634 -1.0121 -0.1782 24 1 2.2246 1.6315 1.0244 25 1 1.2170 2.0185 -0.3808 26 1 3.7744 2.4086 -0.5813 27 1 2.9591 1.5675 -1.9148 28 1 6.2676 -0.1638 -1.1290 29 1 5.5303 1.0224 -2.2325 30 1 5.9862 1.5064 -0.5814 31 1 2.6675 -1.0993 -1.2625 32 1 3.7324 -0.5965 -2.5973 33 1 4.3222 -1.7462 -1.3729 34 1 5.9865 -1.3578 0.3285 35 1 6.3597 0.2979 0.8648 36 1 5.7318 -0.8941 2.0281 37 1 3.6841 -1.7947 1.8097 38 1 3.3464 -1.9057 0.0726 39 1 2.1249 -0.9964 3.5551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219517215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = 19.496010 kcal Electronic energy + Delta-G solvation = -17669.626377 eV Core-core repulsion = 15226.621243 eV Total energy + Delta-G solvation = -2443.005134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32718 -37.81385 -35.43663 -33.49560 -31.08193 -30.30568 -28.32757 -26.53692 -26.17063 -24.81591 -23.59241 -21.25568 -19.16124 -18.72285 -17.76674 -16.51862 -16.26557 -15.74475 -15.56441 -15.47285 -14.82593 -14.24843 -13.90878 -13.82033 -13.59077 -13.34014 -13.10028 -12.77949 -12.63887 -12.56583 -12.46924 -12.11488 -11.96731 -11.96208 -11.80149 -11.67369 -11.43595 -11.14540 -10.56843 -10.44351 -8.97592 -8.87468 -8.58610 -6.33030 1.52805 1.59806 1.78755 2.55583 3.07042 3.19206 3.46894 3.95384 3.99865 4.27213 4.37888 4.46721 4.49181 4.56130 4.59653 4.62512 4.68517 4.81319 4.85945 4.91194 4.92690 4.93602 4.99933 5.07133 5.15716 5.19808 5.26551 5.32143 5.42460 5.57395 5.75660 5.90364 6.04325 6.33251 6.50624 6.52759 6.55341 6.84345 7.49190 8.77196 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033782 B = 0.010070 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.642038 B = 2779.783411 C = 3175.863146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.529 5.529 3 C 0.061 3.939 4 C -0.083 4.083 5 C 0.110 3.890 6 C -0.147 4.147 7 C -0.176 4.176 8 N -0.550 5.550 9 C 0.029 3.971 10 C 0.081 3.919 11 C 0.207 3.793 12 H -0.027 1.027 13 C -0.595 4.595 14 H 0.054 0.946 15 C -0.028 4.028 16 N -0.938 5.938 17 Si 1.111 2.889 18 H -0.289 1.289 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.007 1.007 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.004 0.996 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.026 0.974 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.024 0.976 38 H 0.051 0.949 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 4.078 -10.229 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.252 5.252 3 C -0.068 4.068 4 C -0.122 4.122 5 C 0.020 3.980 6 C -0.204 4.204 7 C -0.234 4.234 8 N -0.274 5.274 9 C -0.119 4.119 10 C -0.046 4.046 11 C 0.100 3.900 12 H -0.009 1.009 13 C -0.634 4.634 14 H 0.072 0.928 15 C -0.227 4.227 16 N -0.576 5.576 17 Si 0.933 3.067 18 H -0.214 1.214 19 H -0.196 1.196 20 H -0.196 1.196 21 H 0.012 0.988 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.022 0.978 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.453 3.402 -9.140 10.721 hybrid contribution 0.642 0.540 -0.396 0.928 sum 5.095 3.942 -9.535 11.507 Atomic orbital electron populations 1.22075 0.87912 1.01440 0.97646 1.61653 1.07445 1.13345 1.42793 1.21799 0.97261 0.90034 0.97726 1.21989 0.93999 0.96851 0.99362 1.20754 0.95786 0.94975 0.86501 1.22246 0.94883 1.01607 1.01658 1.22684 1.03734 0.97419 0.99593 1.61887 1.05432 1.36744 1.23304 1.22489 0.89920 0.99994 0.99485 1.21217 0.92644 0.92149 0.98609 1.18265 0.92386 0.92855 0.86506 1.00926 1.22215 1.30672 1.15797 0.94709 0.92808 1.27177 1.00021 1.02820 0.92656 1.70899 1.27312 1.24745 1.34622 0.83008 0.74813 0.73030 0.75820 1.21439 1.19550 1.19587 0.98836 0.91108 0.92199 0.97784 0.91880 0.91322 0.90642 0.92211 0.90955 0.91746 0.89771 0.92104 0.95097 0.95562 0.89224 0.93642 0.95764 0.93134 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.38 8.51 127.69 1.09 3.47 16 2 N -0.53 -22.83 2.51 -915.39 -2.30 -25.12 16 3 C 0.06 2.33 5.28 87.26 0.46 2.79 16 4 C -0.08 -2.59 5.26 31.49 0.17 -2.42 16 5 C 0.11 3.57 0.80 4.48 0.00 3.57 16 6 C -0.15 -3.61 6.96 71.98 0.50 -3.11 16 7 C -0.18 -5.95 6.72 71.98 0.48 -5.47 16 8 N -0.55 -21.34 4.50 -885.93 -3.99 -25.33 16 9 C 0.03 0.95 8.18 127.69 1.04 1.99 16 10 C 0.08 3.80 4.00 83.95 0.34 4.14 16 11 C 0.21 10.54 1.57 41.82 0.07 10.60 16 12 H -0.03 -1.60 5.63 -2.39 -0.01 -1.62 16 13 C -0.59 -32.64 6.71 25.60 0.17 -32.46 16 14 H 0.05 2.94 6.78 -2.91 -0.02 2.92 16 15 C -0.03 -1.59 5.46 84.66 0.46 -1.13 16 16 N -0.94 -57.76 13.59 21.45 0.29 -57.47 16 17 Si 1.11 50.07 29.90 68.60 2.05 52.12 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.01 -0.33 8.11 -2.39 -0.02 -0.35 16 22 H 0.07 2.39 7.75 -2.38 -0.02 2.37 16 23 H 0.06 2.59 6.50 -2.39 -0.02 2.57 16 24 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 25 H 0.06 2.12 7.36 -2.39 -0.02 2.10 16 26 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 27 H 0.07 2.06 7.97 -2.39 -0.02 2.04 16 28 H 0.06 1.43 6.28 -2.39 -0.01 1.41 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.50 7.38 -2.39 -0.02 1.49 16 31 H 0.08 3.38 4.54 -2.39 -0.01 3.37 16 32 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.03 1.05 7.35 -2.39 -0.02 1.03 16 34 H 0.03 0.80 7.32 -2.38 -0.02 0.79 16 35 H 0.09 2.43 6.30 -2.39 -0.02 2.41 16 36 H 0.04 1.58 7.96 -2.39 -0.02 1.56 16 37 H 0.02 1.26 7.72 -2.39 -0.02 1.24 16 38 H 0.05 2.36 4.60 -2.38 -0.01 2.35 16 39 H 0.26 16.26 6.59 -92.71 -0.61 15.65 16 Total: -1.00 -63.00 278.85 2.01 -60.99 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.17 Total: 12.84 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.78 Total: -18.04 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -5.99 Total: -107.91 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -63.00 2.01 -60.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219517215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.487 kcal (2) G-P(sol) polarization free energy of solvation -63.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds