Wall clock time and date at job start Mon Mar 30 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.40081 * 110.99925 * 2 1 4 4 C 1.54518 * 111.50857 * 188.14654 * 3 2 1 5 5 C 1.50741 * 108.94367 * 283.98915 * 4 3 2 6 6 C 1.52995 * 108.78860 * 213.54078 * 5 4 3 7 7 C 1.53000 * 108.78885 * 331.86825 * 5 4 3 8 8 N 1.48072 * 112.93870 * 92.64862 * 5 4 3 9 9 C 1.46898 * 110.99799 * 192.21866 * 8 5 4 10 10 C 1.47749 * 113.78710 * 318.28481 * 8 5 4 11 11 H 1.08999 * 108.99196 * 79.42032 * 10 8 5 12 12 C 1.50699 * 108.99110 * 198.24591 * 10 8 5 13 13 H 1.07999 * 120.00017 * 5.35160 * 12 10 8 14 14 C 1.37872 * 119.99907 * 185.34846 * 12 10 8 15 15 N 1.31517 * 120.00184 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99947 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47256 * 119.99849 * 16 14 12 19 19 H 1.48503 * 109.46713 * 240.00222 * 16 14 12 20 20 C 1.47691 * 110.99682 * 128.63422 * 2 1 3 21 21 H 1.08998 * 109.47094 * 56.04993 * 1 2 3 22 22 H 1.09001 * 109.47084 * 176.04708 * 1 2 3 23 23 H 1.09004 * 109.47335 * 296.05306 * 1 2 3 24 24 H 1.08997 * 109.06912 * 308.66833 * 3 2 1 25 25 H 1.09001 * 109.07757 * 67.62660 * 3 2 1 26 26 H 1.08997 * 109.56012 * 43.82550 * 4 3 2 27 27 H 1.09000 * 109.55654 * 164.04113 * 4 3 2 28 28 H 1.08998 * 109.47345 * 60.00139 * 6 5 4 29 29 H 1.09002 * 109.47328 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47606 * 299.99974 * 6 5 4 31 31 H 1.09002 * 109.47211 * 42.00866 * 7 5 4 32 32 H 1.09004 * 109.47118 * 162.00380 * 7 5 4 33 33 H 1.08994 * 109.47597 * 282.00664 * 7 5 4 34 34 H 1.09000 * 109.46973 * 76.33891 * 9 8 5 35 35 H 1.09004 * 109.46579 * 196.33406 * 9 8 5 36 36 H 1.08994 * 109.47286 * 316.33016 * 9 8 5 37 37 H 0.96998 * 119.99621 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.74346 * 271.64098 * 20 2 1 39 39 H 1.09005 * 109.73557 * 32.34110 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9710 1.3078 0.0000 4 6 3.5026 1.3267 -0.2037 5 6 4.1725 0.9183 1.0834 6 6 5.4939 1.6783 1.2139 7 6 3.2660 1.3028 2.2544 8 7 4.4491 -0.5347 1.1543 9 6 4.8283 -0.9325 2.5165 10 6 3.3473 -1.3766 0.6441 11 1 3.3873 -1.3914 -0.4450 12 6 3.5241 -2.7814 1.1602 13 1 4.3118 -3.0025 1.8652 14 6 2.6803 -3.7843 0.7324 15 7 1.7214 -3.5151 -0.1265 16 14 2.8991 -5.5255 1.3726 17 1 4.0416 -5.5644 2.3205 18 1 1.6611 -5.9553 2.0709 19 1 3.1691 -6.4409 0.2349 20 6 1.9982 -0.8609 1.0771 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 -0.3634 0.4514 0.9233 24 1 1.4977 1.8709 -0.8043 25 1 1.7326 1.7809 0.9526 26 1 3.7742 0.6273 -0.9944 27 1 3.8215 2.3317 -0.4801 28 1 5.2970 2.7503 1.2240 29 1 5.9880 1.3914 2.1422 30 1 6.1380 1.4352 0.3689 31 1 2.2318 1.0633 2.0072 32 1 3.5651 0.7470 3.1432 33 1 3.3553 2.3718 2.4473 34 1 3.9382 -0.9730 3.1443 35 1 5.2994 -1.9151 2.4901 36 1 5.5289 -0.2047 2.9259 37 1 1.1280 -4.2208 -0.4277 38 1 2.1027 -0.2810 1.9940 39 1 1.3208 -1.6981 1.2455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219517505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:55 Heat of formation + Delta-G solvation = 65.750492 kcal Electronic energy + Delta-G solvation = -17796.153594 eV Core-core repulsion = 15355.154205 eV Total energy + Delta-G solvation = -2440.999389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01515 -35.63310 -33.98150 -31.56955 -28.96861 -27.92756 -27.31587 -25.38571 -24.92923 -23.06904 -21.55894 -19.36965 -17.44807 -16.48684 -15.75850 -15.09567 -14.58837 -14.41035 -14.03795 -13.45787 -13.02203 -12.75317 -12.42311 -12.22045 -11.84459 -11.56282 -11.34169 -11.25443 -10.99757 -10.95061 -10.80960 -10.59261 -10.39924 -10.14905 -10.06350 -9.94106 -9.73219 -9.30479 -8.68767 -8.30813 -7.16664 -6.84693 -5.92896 -3.99589 3.31654 3.40349 3.43561 4.44863 4.85310 5.03500 5.34711 5.39266 5.42772 5.64249 5.89437 5.93683 5.95740 6.02306 6.10294 6.11427 6.19235 6.28596 6.34171 6.41864 6.47901 6.52066 6.60295 6.60900 6.77805 6.82561 6.94619 6.97864 7.12213 7.38779 7.72655 7.88838 8.07846 8.21363 8.42258 8.54038 8.78402 9.10806 9.64978 11.11519 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.011853 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.250964 B = 2361.801834 C = 3050.069475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.548 5.548 3 C 0.063 3.937 4 C -0.106 4.106 5 C 0.111 3.889 6 C -0.133 4.133 7 C -0.211 4.211 8 N -0.538 5.538 9 C 0.042 3.958 10 C 0.221 3.779 11 H 0.057 0.943 12 C -0.521 4.521 13 H 0.068 0.932 14 C 0.062 3.938 15 N -0.875 5.875 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.040 3.960 21 H 0.049 0.951 22 H 0.071 0.929 23 H 0.004 0.996 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.257 0.743 38 H 0.030 0.970 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 8.871 2.571 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.272 5.272 3 C -0.067 4.067 4 C -0.144 4.144 5 C 0.022 3.978 6 C -0.190 4.190 7 C -0.269 4.269 8 N -0.263 5.263 9 C -0.106 4.106 10 C 0.114 3.886 11 H 0.074 0.926 12 C -0.560 4.560 13 H 0.085 0.915 14 C -0.141 4.141 15 N -0.513 5.513 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.211 1.211 20 C -0.086 4.086 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.022 0.978 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.257 8.513 1.756 8.783 hybrid contribution -1.012 -0.490 1.531 1.899 sum 0.245 8.024 3.287 8.674 Atomic orbital electron populations 1.22199 0.88548 1.02050 0.97842 1.58963 1.06024 1.11663 1.50519 1.21230 0.95638 0.90951 0.98875 1.21527 0.94068 1.00668 0.98183 1.20635 0.93337 0.89883 0.93988 1.21925 0.97511 0.97877 1.01736 1.23561 1.02954 1.00096 1.00240 1.62343 1.41945 1.00590 1.21420 1.22234 0.98147 1.00170 0.90048 1.19114 0.82734 0.89453 0.97252 0.92551 1.21540 1.15184 0.92493 1.26751 0.91452 1.24960 0.95490 0.98497 0.95134 1.70064 1.17880 1.32260 1.31137 0.86606 0.77775 0.85291 0.78696 1.19893 1.21357 1.21120 1.23052 1.01446 0.94783 0.89353 0.93242 0.90992 0.97783 0.92944 0.95886 0.89924 0.92064 0.93578 0.93145 0.92390 0.89377 0.92345 0.94036 0.96180 0.91114 0.94501 0.93309 0.95242 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.46 60.07 0.57 1.35 16 2 N -0.55 -11.54 4.23 -248.01 -1.05 -12.59 16 3 C 0.06 1.13 4.85 -6.55 -0.03 1.10 16 4 C -0.11 -1.90 5.05 -27.07 -0.14 -2.04 16 5 C 0.11 2.03 0.68 -132.09 -0.09 1.94 16 6 C -0.13 -2.07 8.16 37.16 0.30 -1.76 16 7 C -0.21 -3.66 6.24 37.16 0.23 -3.43 16 8 N -0.54 -11.61 4.61 -221.70 -1.02 -12.64 16 9 C 0.04 0.85 7.07 60.06 0.42 1.27 16 10 C 0.22 5.47 1.74 -69.51 -0.12 5.35 16 11 H 0.06 1.62 7.19 -51.93 -0.37 1.25 16 12 C -0.52 -13.94 7.86 -34.44 -0.27 -14.21 16 13 H 0.07 1.79 5.19 -52.49 -0.27 1.52 16 14 C 0.06 1.67 5.02 -17.82 -0.09 1.58 16 15 N -0.88 -24.48 11.87 55.43 0.66 -23.82 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.04 0.94 4.31 -4.50 -0.02 0.92 16 21 H 0.05 0.82 7.98 -51.93 -0.41 0.41 16 22 H 0.07 1.47 7.95 -51.93 -0.41 1.05 16 23 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 24 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 25 H 0.02 0.42 5.03 -51.93 -0.26 0.15 16 26 H 0.08 1.69 7.19 -51.93 -0.37 1.32 16 27 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 28 H 0.05 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.05 0.77 6.38 -51.93 -0.33 0.44 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.65 2.67 -51.93 -0.14 1.51 16 32 H 0.06 1.04 5.40 -51.93 -0.28 0.76 16 33 H 0.04 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.02 0.41 6.29 -51.93 -0.33 0.09 16 35 H 0.07 1.50 6.08 -51.93 -0.32 1.18 16 36 H 0.04 0.64 6.15 -51.93 -0.32 0.33 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.03 0.67 3.58 -51.93 -0.19 0.48 16 39 H 0.09 2.41 5.78 -51.93 -0.30 2.11 16 LS Contribution 270.99 15.07 4.08 4.08 Total: -1.00 -27.46 270.99 -7.51 -34.97 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.92 Total: 1.85 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 0.77 Total: -7.92 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -1.41 Total: -49.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.46 -7.51 -34.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219517505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.717 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds