Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.40081 * 110.99925 * 2 1 4 4 C 1.54518 * 111.50857 * 188.14654 * 3 2 1 5 5 C 1.50741 * 108.94367 * 283.98915 * 4 3 2 6 6 C 1.52995 * 108.78860 * 213.54078 * 5 4 3 7 7 C 1.53000 * 108.78885 * 331.86825 * 5 4 3 8 8 N 1.48072 * 112.93870 * 92.64862 * 5 4 3 9 9 C 1.46898 * 110.99799 * 192.21866 * 8 5 4 10 10 C 1.47749 * 113.78710 * 318.28481 * 8 5 4 11 11 H 1.08999 * 108.99196 * 79.42032 * 10 8 5 12 12 C 1.50699 * 108.99110 * 198.24591 * 10 8 5 13 13 H 1.07999 * 120.00017 * 5.35160 * 12 10 8 14 14 C 1.37872 * 119.99907 * 185.34846 * 12 10 8 15 15 N 1.31517 * 120.00184 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99947 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47256 * 119.99849 * 16 14 12 19 19 H 1.48503 * 109.46713 * 240.00222 * 16 14 12 20 20 C 1.47691 * 110.99682 * 128.63422 * 2 1 3 21 21 H 1.08998 * 109.47094 * 56.04993 * 1 2 3 22 22 H 1.09001 * 109.47084 * 176.04708 * 1 2 3 23 23 H 1.09004 * 109.47335 * 296.05306 * 1 2 3 24 24 H 1.08997 * 109.06912 * 308.66833 * 3 2 1 25 25 H 1.09001 * 109.07757 * 67.62660 * 3 2 1 26 26 H 1.08997 * 109.56012 * 43.82550 * 4 3 2 27 27 H 1.09000 * 109.55654 * 164.04113 * 4 3 2 28 28 H 1.08998 * 109.47345 * 60.00139 * 6 5 4 29 29 H 1.09002 * 109.47328 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47606 * 299.99974 * 6 5 4 31 31 H 1.09002 * 109.47211 * 42.00866 * 7 5 4 32 32 H 1.09004 * 109.47118 * 162.00380 * 7 5 4 33 33 H 1.08994 * 109.47597 * 282.00664 * 7 5 4 34 34 H 1.09000 * 109.46973 * 76.33891 * 9 8 5 35 35 H 1.09004 * 109.46579 * 196.33406 * 9 8 5 36 36 H 1.08994 * 109.47286 * 316.33016 * 9 8 5 37 37 H 0.96998 * 119.99621 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.74346 * 271.64098 * 20 2 1 39 39 H 1.09005 * 109.73557 * 32.34110 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9710 1.3078 0.0000 4 6 3.5026 1.3267 -0.2037 5 6 4.1725 0.9183 1.0834 6 6 5.4939 1.6783 1.2139 7 6 3.2660 1.3028 2.2544 8 7 4.4491 -0.5347 1.1543 9 6 4.8283 -0.9325 2.5165 10 6 3.3473 -1.3766 0.6441 11 1 3.3873 -1.3914 -0.4450 12 6 3.5241 -2.7814 1.1602 13 1 4.3118 -3.0025 1.8652 14 6 2.6803 -3.7843 0.7324 15 7 1.7214 -3.5151 -0.1265 16 14 2.8991 -5.5255 1.3726 17 1 4.0416 -5.5644 2.3205 18 1 1.6611 -5.9553 2.0709 19 1 3.1691 -6.4409 0.2349 20 6 1.9982 -0.8609 1.0771 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 -0.3634 0.4514 0.9233 24 1 1.4977 1.8709 -0.8043 25 1 1.7326 1.7809 0.9526 26 1 3.7742 0.6273 -0.9944 27 1 3.8215 2.3317 -0.4801 28 1 5.2970 2.7503 1.2240 29 1 5.9880 1.3914 2.1422 30 1 6.1380 1.4352 0.3689 31 1 2.2318 1.0633 2.0072 32 1 3.5651 0.7470 3.1432 33 1 3.3553 2.3718 2.4473 34 1 3.9382 -0.9730 3.1443 35 1 5.2994 -1.9151 2.4901 36 1 5.5289 -0.2047 2.9259 37 1 1.1280 -4.2208 -0.4277 38 1 2.1027 -0.2810 1.9940 39 1 1.3208 -1.6981 1.2455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219517505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = 46.574073 kcal Electronic energy + Delta-G solvation = -17796.985146 eV Core-core repulsion = 15355.154205 eV Total energy + Delta-G solvation = -2441.830941 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58971 -37.21109 -35.79759 -33.42708 -30.54381 -29.53928 -28.72616 -27.30126 -26.45744 -24.67485 -23.24391 -21.09934 -18.97134 -18.37160 -17.41627 -16.76558 -16.34051 -16.14448 -15.62221 -15.02227 -14.60973 -14.35307 -13.97083 -13.85975 -13.39781 -13.11097 -12.95585 -12.81393 -12.72178 -12.52269 -12.44772 -12.36297 -12.02368 -11.78885 -11.61459 -11.53316 -11.35338 -10.98239 -10.64810 -10.33946 -8.78482 -8.50575 -8.00489 -6.13341 1.40934 1.44056 1.53926 2.46048 3.20168 3.37047 3.45211 3.98419 4.02519 4.22204 4.44365 4.49247 4.51450 4.57578 4.64090 4.74272 4.78662 4.84986 4.90551 4.93918 5.01972 5.07873 5.11144 5.12310 5.22663 5.29233 5.34529 5.47040 5.52723 5.59726 5.82260 5.86313 6.24430 6.46380 6.65146 6.81252 7.03662 7.09180 7.55531 9.02963 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.011853 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.250964 B = 2361.801834 C = 3050.069475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.569 5.569 3 C 0.059 3.941 4 C -0.104 4.104 5 C 0.102 3.898 6 C -0.126 4.126 7 C -0.203 4.203 8 N -0.554 5.554 9 C 0.050 3.950 10 C 0.234 3.766 11 H 0.007 0.993 12 C -0.537 4.537 13 H 0.066 0.934 14 C 0.016 3.984 15 N -0.901 5.901 16 Si 0.949 3.051 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.286 1.286 20 C 0.058 3.942 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.019 0.981 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.010 0.990 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.256 0.744 38 H 0.041 0.959 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 10.696 3.470 11.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.293 5.293 3 C -0.070 4.070 4 C -0.142 4.142 5 C 0.013 3.987 6 C -0.183 4.183 7 C -0.261 4.261 8 N -0.278 5.278 9 C -0.098 4.098 10 C 0.126 3.874 11 H 0.025 0.975 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.184 4.184 15 N -0.539 5.539 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.070 4.070 21 H 0.092 0.908 22 H 0.064 0.936 23 H 0.037 0.963 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.760 10.357 2.662 10.837 hybrid contribution -1.141 -1.001 1.214 1.944 sum 0.619 9.356 3.876 10.145 Atomic orbital electron populations 1.22148 0.87347 1.01012 0.99627 1.58875 1.07342 1.13282 1.49836 1.21337 0.95852 0.89470 1.00291 1.21557 0.94062 1.01631 0.96968 1.20861 0.95383 0.87831 0.94618 1.21874 0.95597 0.99181 1.01697 1.23415 1.01458 1.01922 0.99293 1.62206 1.40834 1.02584 1.22213 1.22142 0.98166 1.00191 0.89257 1.18728 0.84680 0.89679 0.94264 0.97500 1.21895 1.15012 0.94019 1.26654 0.91601 1.25652 0.95317 1.01984 0.95416 1.70200 1.18498 1.33090 1.32138 0.85656 0.77815 0.80937 0.78058 1.19271 1.20967 1.21221 1.22657 0.99625 0.94188 0.90537 0.90829 0.93632 0.96288 0.91047 0.94436 0.93357 0.88589 0.90594 0.92757 0.92936 0.90970 0.92896 0.91017 0.97135 0.92912 0.91452 0.93538 0.94194 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.72 9.46 127.69 1.21 2.93 16 2 N -0.57 -23.95 4.23 -938.57 -3.97 -27.92 16 3 C 0.06 2.03 4.85 88.05 0.43 2.45 16 4 C -0.10 -3.53 5.05 30.38 0.15 -3.38 16 5 C 0.10 3.50 0.68 2.57 0.00 3.50 16 6 C -0.13 -3.47 8.16 71.98 0.59 -2.89 16 7 C -0.20 -6.45 6.24 71.98 0.45 -6.00 16 8 N -0.55 -23.76 4.61 -855.31 -3.95 -27.70 16 9 C 0.05 1.99 7.07 127.69 0.90 2.89 16 10 C 0.23 11.92 1.74 43.28 0.08 11.99 16 11 H 0.01 0.43 7.19 -2.39 -0.02 0.41 16 12 C -0.54 -29.53 7.86 25.60 0.20 -29.33 16 13 H 0.07 3.57 5.19 -2.91 -0.02 3.55 16 14 C 0.02 0.91 5.02 84.65 0.43 1.33 16 15 N -0.90 -52.12 11.87 21.45 0.25 -51.86 16 16 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 C 0.06 2.73 4.31 85.43 0.37 3.10 16 21 H 0.07 2.33 7.98 -2.39 -0.02 2.32 16 22 H 0.04 1.90 7.95 -2.39 -0.02 1.88 16 23 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.07 2.17 7.91 -2.39 -0.02 2.15 16 25 H 0.04 1.22 5.03 -2.39 -0.01 1.21 16 26 H 0.05 1.98 7.19 -2.39 -0.02 1.96 16 27 H 0.10 2.56 7.69 -2.39 -0.02 2.54 16 28 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 29 H 0.05 1.45 6.38 -2.39 -0.02 1.43 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 2.54 2.67 -2.39 -0.01 2.53 16 32 H 0.05 1.74 5.40 -2.38 -0.01 1.73 16 33 H 0.07 1.85 7.92 -2.39 -0.02 1.83 16 34 H 0.01 0.42 6.29 -2.39 -0.02 0.41 16 35 H 0.05 2.24 6.08 -2.38 -0.01 2.22 16 36 H 0.07 2.21 6.15 -2.39 -0.01 2.20 16 37 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.04 1.80 3.58 -2.39 -0.01 1.79 16 39 H 0.05 2.94 5.78 -2.38 -0.01 2.93 16 Total: -1.00 -60.87 270.99 0.20 -60.67 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.04 Total: 14.06 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.80 Total: -13.40 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -7.66 Total: -107.49 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.87 0.20 -60.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219517505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.248 kcal (2) G-P(sol) polarization free energy of solvation -60.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds