Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48065 * 110.99770 * 2 1 4 4 C 1.53696 * 112.47070 * 192.20244 * 3 2 1 5 5 C 1.50801 * 112.09796 * 318.54613 * 4 3 2 6 6 C 1.53003 * 109.63672 * 212.25818 * 5 4 3 7 7 C 1.52997 * 109.63646 * 332.85572 * 5 4 3 8 8 N 1.47909 * 108.48807 * 92.55512 * 5 4 3 9 9 C 1.46913 * 110.99788 * 153.77694 * 8 5 4 10 10 C 1.40008 * 114.07430 * 280.06636 * 8 5 4 11 11 H 1.09002 * 108.96002 * 301.14337 * 10 8 5 12 12 C 1.50698 * 108.96484 * 182.48066 * 10 8 5 13 13 H 1.08000 * 119.99741 * 324.86904 * 12 10 8 14 14 C 1.37875 * 120.00412 * 144.86397 * 12 10 8 15 15 N 1.31513 * 119.99663 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00180 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47219 * 120.00034 * 16 14 12 19 19 H 1.48505 * 109.46992 * 240.00251 * 16 14 12 20 20 C 1.44570 * 111.00050 * 232.31167 * 2 1 3 21 21 H 1.09001 * 109.47423 * 56.04993 * 1 2 3 22 22 H 1.09003 * 109.47101 * 176.04585 * 1 2 3 23 23 H 1.08998 * 109.46844 * 296.04650 * 1 2 3 24 24 H 1.09006 * 108.88097 * 312.96728 * 3 2 1 25 25 H 1.08991 * 108.88370 * 71.42500 * 3 2 1 26 26 H 1.08993 * 108.96178 * 79.22791 * 4 3 2 27 27 H 1.09009 * 108.95363 * 197.88032 * 4 3 2 28 28 H 1.08999 * 109.46764 * 59.99736 * 6 5 4 29 29 H 1.08997 * 109.47236 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.46600 * 300.00317 * 6 5 4 31 31 H 1.09010 * 109.47034 * 67.82766 * 7 5 4 32 32 H 1.09000 * 109.47611 * 187.82651 * 7 5 4 33 33 H 1.08997 * 109.47093 * 307.83237 * 7 5 4 34 34 H 1.08993 * 109.46719 * 56.08445 * 9 8 5 35 35 H 1.08998 * 109.46601 * 176.08062 * 9 8 5 36 36 H 1.09003 * 109.46822 * 296.08287 * 9 8 5 37 37 H 0.97002 * 119.99761 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.57699 * 340.15073 * 20 2 1 39 39 H 1.09001 * 109.58036 * 100.52911 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3823 0.0000 4 6 3.5061 1.4333 -0.3002 5 6 4.2631 0.3385 0.4085 6 6 5.6668 0.8318 0.7653 7 6 3.5157 -0.0623 1.6819 8 7 4.3611 -0.8264 -0.4977 9 6 5.5408 -1.6424 -0.1804 10 6 3.2041 -1.6135 -0.5433 11 1 2.9840 -1.9779 0.4602 12 6 3.4500 -2.7937 -1.4475 13 1 4.0719 -2.6825 -2.3234 14 6 2.8811 -4.0154 -1.1565 15 7 2.1243 -4.1509 -0.0896 16 14 3.1864 -5.4785 -2.2770 17 1 4.0671 -5.0669 -3.3997 18 1 3.8433 -6.5642 -1.5057 19 1 1.8921 -5.9677 -2.8163 20 6 1.9871 -0.8251 -1.0681 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 -0.3633 0.4512 0.9233 24 1 1.4697 1.9636 -0.7547 25 1 1.8193 1.8294 0.9775 26 1 3.6568 1.3298 -1.3747 27 1 3.8983 2.3989 0.0193 28 1 5.5912 1.7010 1.4187 29 1 6.2117 0.0384 1.2769 30 1 6.1975 1.1074 -0.1460 31 1 2.5776 -0.5490 1.4146 32 1 4.1297 -0.7509 2.2622 33 1 3.3069 0.8274 2.2759 34 1 5.5023 -1.9452 0.8659 35 1 5.5508 -2.5286 -0.8150 36 1 6.4444 -1.0588 -0.3568 37 1 1.7237 -5.0104 0.1149 38 1 1.2162 -1.5212 -1.3987 39 1 2.2932 -0.1935 -1.9020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219517581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = 34.095958 kcal Electronic energy + Delta-G solvation = -17703.018287 eV Core-core repulsion = 15260.646254 eV Total energy + Delta-G solvation = -2442.372033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55080 -35.62213 -33.88914 -31.60882 -29.14262 -28.07037 -26.60676 -25.36742 -24.96603 -22.85576 -21.76565 -19.20615 -17.39451 -16.51070 -15.37794 -15.05280 -14.68340 -14.44720 -14.15708 -13.20303 -13.03824 -12.53059 -12.34943 -12.19671 -11.71727 -11.49357 -11.42720 -11.24911 -11.05331 -10.84050 -10.80608 -10.64362 -10.37552 -10.20611 -10.08799 -9.88179 -9.64681 -9.44785 -8.86655 -8.47397 -7.21982 -6.69871 -5.95391 -4.01105 3.30073 3.38903 3.43345 4.42417 4.70008 5.09787 5.37636 5.44326 5.56166 5.74036 5.85111 5.94338 6.00318 6.03761 6.21982 6.27085 6.31353 6.36831 6.41372 6.46164 6.53460 6.62045 6.65133 6.77181 6.79073 6.85005 7.05440 7.11190 7.39862 7.54943 7.81649 7.90959 7.96782 8.15037 8.20423 8.63121 8.98657 9.21855 9.65171 11.09629 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.011543 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.774560 B = 2425.154008 C = 3055.977401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.546 5.546 3 C 0.067 3.933 4 C -0.104 4.104 5 C 0.117 3.883 6 C -0.140 4.140 7 C -0.193 4.193 8 N -0.538 5.538 9 C 0.045 3.955 10 C 0.210 3.790 11 H 0.042 0.958 12 C -0.505 4.505 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.080 3.920 21 H 0.012 0.988 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.007 0.993 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 8.718 1.327 8.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.270 5.270 3 C -0.061 4.061 4 C -0.143 4.143 5 C 0.027 3.973 6 C -0.198 4.198 7 C -0.251 4.251 8 N -0.263 5.263 9 C -0.103 4.103 10 C 0.101 3.899 11 H 0.059 0.941 12 C -0.545 4.545 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.048 4.048 21 H 0.031 0.969 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.148 8.555 1.375 8.741 hybrid contribution -0.327 -0.768 -0.472 0.959 sum 0.821 7.788 0.903 7.883 Atomic orbital electron populations 1.22367 0.88742 1.01647 0.98970 1.61083 1.05992 1.11069 1.48884 1.22305 0.95081 0.89298 0.99368 1.21453 0.93634 0.97611 1.01572 1.20539 0.93295 0.91989 0.91441 1.22045 0.97075 1.00128 1.00538 1.22946 1.05172 1.00354 0.96661 1.59646 1.05958 1.10672 1.50006 1.22185 0.91761 0.97866 0.98444 1.18287 0.84663 0.88853 0.98086 0.94061 1.21184 1.30047 0.93440 1.09797 0.92319 1.24986 0.95236 0.98642 0.95060 1.69986 1.32513 1.24425 1.25509 0.86607 0.77969 0.82866 0.80969 1.19696 1.21151 1.21158 1.22272 0.98812 0.93664 0.90049 0.96930 0.91240 0.92804 0.96181 0.92170 0.91366 0.92470 0.93532 0.92697 0.92739 0.85538 0.95093 0.94822 0.97477 0.90020 0.94321 0.93135 0.91546 0.95818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.51 60.07 0.57 1.11 16 2 N -0.55 -10.79 2.10 -242.59 -0.51 -11.30 16 3 C 0.07 1.14 4.72 -2.82 -0.01 1.13 16 4 C -0.10 -1.80 4.77 -27.47 -0.13 -1.93 16 5 C 0.12 2.20 0.72 -132.15 -0.09 2.10 16 6 C -0.14 -2.27 7.10 37.16 0.26 -2.00 16 7 C -0.19 -3.81 6.65 37.16 0.25 -3.56 16 8 N -0.54 -11.88 4.06 -225.44 -0.92 -12.79 16 9 C 0.05 0.96 8.03 60.07 0.48 1.45 16 10 C 0.21 5.19 1.45 -71.79 -0.10 5.09 16 11 H 0.04 1.17 5.35 -51.93 -0.28 0.89 16 12 C -0.51 -13.58 6.23 -34.44 -0.21 -13.80 16 13 H 0.06 1.61 7.64 -52.49 -0.40 1.21 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.25 12.79 55.43 0.71 -24.54 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.08 1.83 4.80 -4.44 -0.02 1.81 16 21 H 0.01 0.20 8.02 -51.93 -0.42 -0.22 16 22 H 0.07 1.29 7.73 -51.93 -0.40 0.88 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.02 0.32 7.95 -51.93 -0.41 -0.09 16 25 H 0.06 0.95 7.62 -51.93 -0.40 0.56 16 26 H 0.07 1.26 7.23 -51.93 -0.38 0.89 16 27 H 0.06 0.84 7.71 -51.92 -0.40 0.44 16 28 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.05 0.90 6.53 -51.93 -0.34 0.56 16 30 H 0.05 0.85 7.99 -51.93 -0.42 0.43 16 31 H 0.13 2.83 3.64 -51.92 -0.19 2.64 16 32 H 0.03 0.63 7.75 -51.93 -0.40 0.22 16 33 H 0.03 0.58 7.69 -51.93 -0.40 0.18 16 34 H 0.01 0.15 7.44 -51.93 -0.39 -0.24 16 35 H 0.08 1.89 6.13 -51.93 -0.32 1.57 16 36 H 0.04 0.71 6.63 -51.93 -0.34 0.37 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.07 1.64 7.22 -51.93 -0.38 1.27 16 39 H 0.02 0.54 6.93 -51.93 -0.36 0.18 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -27.75 281.00 -7.20 -34.96 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.59 Total: 0.35 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 0.89 Total: -6.98 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.72 Total: -48.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.75 -7.20 -34.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219517581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.051 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds