Wall clock time and date at job start Mon Mar 30 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.40015 * 110.99891 * 2 1 4 4 C 1.54206 * 112.07983 * 188.09574 * 3 2 1 5 5 H 1.08993 * 109.57586 * 40.99425 * 4 3 2 6 6 C 1.50705 * 109.57170 * 161.37283 * 4 3 2 7 7 H 1.08000 * 119.99661 * 114.60249 * 6 4 3 8 8 C 1.37876 * 119.99767 * 294.60137 * 6 4 3 9 9 N 1.31503 * 120.00190 * 0.02562 * 8 6 4 10 10 Si 1.86807 * 119.99451 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47133 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46802 * 120.00175 * 10 8 6 13 13 H 1.48500 * 109.46792 * 239.99912 * 10 8 6 14 14 N 1.44570 * 108.84814 * 281.18102 * 4 3 2 15 15 C 1.46896 * 111.00078 * 220.35242 * 14 4 3 16 16 C 1.48063 * 113.85513 * 94.23330 * 14 4 3 17 17 C 1.53702 * 112.47137 * 318.31289 * 16 14 4 18 18 C 1.53005 * 108.95153 * 79.22661 * 17 16 14 19 19 C 1.53001 * 108.95767 * 197.87477 * 17 16 14 20 20 C 1.47905 * 110.99900 * 127.97024 * 2 1 3 21 21 H 1.09004 * 109.47002 * 56.04476 * 1 2 3 22 22 H 1.09002 * 109.47542 * 176.04565 * 1 2 3 23 23 H 1.09000 * 109.47402 * 296.04680 * 1 2 3 24 24 H 1.08999 * 108.95738 * 308.75899 * 3 2 1 25 25 H 1.08994 * 108.96068 * 67.50939 * 3 2 1 26 26 H 0.97006 * 120.00162 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.47673 * 69.70315 * 15 14 4 28 28 H 1.09000 * 109.47436 * 189.70257 * 15 14 4 29 29 H 1.09004 * 109.47160 * 309.69519 * 15 14 4 30 30 H 1.08997 * 108.88267 * 79.08662 * 16 14 4 31 31 H 1.09001 * 108.88324 * 197.64849 * 16 14 4 32 32 H 1.09004 * 109.46703 * 35.45239 * 18 17 16 33 33 H 1.09002 * 109.46811 * 155.44944 * 18 17 16 34 34 H 1.08996 * 109.47413 * 275.45353 * 18 17 16 35 35 H 1.09002 * 109.46525 * 60.00704 * 19 17 16 36 36 H 1.09002 * 109.46744 * 179.97438 * 19 17 16 37 37 H 1.08993 * 109.47155 * 300.00684 * 19 17 16 38 38 H 1.09001 * 109.62909 * 273.49389 * 20 2 1 39 39 H 1.09004 * 109.63218 * 34.08059 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9708 1.3072 0.0000 4 6 3.4992 1.3414 -0.2012 5 1 3.7846 0.6095 -0.9569 6 6 3.9193 2.7190 -0.6449 7 1 4.5427 3.3257 -0.0048 8 6 3.5079 3.2047 -1.8680 9 7 2.7485 2.4660 -2.6471 10 14 4.0292 4.9120 -2.4182 11 1 4.8759 5.5334 -1.3683 12 1 4.8032 4.8101 -3.6815 13 1 2.8236 5.7494 -2.6424 14 7 4.1427 1.0191 1.0526 15 6 5.3221 1.8668 1.2722 16 6 4.4847 -0.4140 1.1992 17 6 3.3683 -1.3395 0.6897 18 6 3.4437 -1.4156 -0.8366 19 6 3.5824 -2.7405 1.2661 20 6 1.9990 -0.8496 1.0885 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3634 -1.0252 -0.0709 23 1 -0.3634 0.4512 0.9233 24 1 1.4951 1.8690 -0.8039 25 1 1.7295 1.7791 0.9524 26 1 2.4593 2.8076 -3.5077 27 1 5.0027 2.8908 1.4658 28 1 5.8836 1.4934 2.1286 29 1 5.9554 1.8452 0.3853 30 1 5.3961 -0.6185 0.6375 31 1 4.6646 -0.6278 2.2528 32 1 4.4869 -1.3819 -1.1509 33 1 2.9916 -2.3473 -1.1767 34 1 2.9065 -0.5718 -1.2695 35 1 3.5533 -2.6938 2.3547 36 1 2.7942 -3.4041 0.9101 37 1 4.5516 -3.1215 0.9444 38 1 2.0718 -0.2658 2.0062 39 1 1.3364 -1.7009 1.2443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219519287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:39 Heat of formation + Delta-G solvation = 39.597843 kcal Electronic energy + Delta-G solvation = -17636.565752 eV Core-core repulsion = 15194.432299 eV Total energy + Delta-G solvation = -2442.133453 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.40290 -35.30115 -34.63026 -32.23982 -28.64810 -26.96292 -26.33422 -26.27598 -24.84696 -23.50609 -21.29967 -19.10419 -17.98980 -16.38885 -15.51717 -14.86266 -14.37205 -14.30988 -13.99047 -13.28772 -12.94577 -12.88442 -12.49181 -12.23668 -12.00467 -11.62509 -11.51639 -11.30405 -11.02731 -10.84016 -10.68675 -10.51663 -10.31906 -10.08974 -10.01497 -9.84362 -9.67347 -9.45822 -8.59027 -8.46318 -7.11358 -6.85232 -6.00395 -4.04851 3.28842 3.37443 3.40646 4.41648 4.88895 5.04838 5.31031 5.34594 5.57401 5.72841 5.97570 6.01546 6.01754 6.09177 6.18142 6.22920 6.26282 6.34242 6.44783 6.45733 6.46675 6.63334 6.72639 6.85714 6.88166 6.90460 6.99846 7.03423 7.35841 7.60271 7.80222 7.94835 8.06872 8.12311 8.40191 8.48355 8.81801 9.06455 9.60905 11.06154 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.010784 C = 0.009161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.403428 B = 2595.732503 C = 3055.754155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.543 5.543 3 C 0.084 3.916 4 C 0.205 3.795 5 H 0.049 0.951 6 C -0.530 4.530 7 H 0.072 0.928 8 C 0.064 3.936 9 N -0.880 5.880 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.558 5.558 15 C 0.054 3.946 16 C 0.076 3.924 17 C -0.062 4.062 18 C -0.151 4.151 19 C -0.135 4.135 20 C 0.081 3.919 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.011 0.989 24 H 0.091 0.909 25 H -0.005 1.005 26 H 0.259 0.741 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.021 0.979 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 -6.543 5.537 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.266 5.266 3 C -0.045 4.045 4 C 0.098 3.902 5 H 0.066 0.934 6 C -0.569 4.569 7 H 0.090 0.910 8 C -0.139 4.139 9 N -0.518 5.518 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.283 5.283 15 C -0.094 4.094 16 C -0.052 4.052 17 C -0.063 4.063 18 C -0.208 4.208 19 C -0.193 4.193 20 C -0.047 4.047 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.109 0.891 25 H 0.013 0.987 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.751 -6.614 5.285 8.499 hybrid contribution 0.531 1.118 -0.233 1.260 sum -0.220 -5.496 5.051 7.468 Atomic orbital electron populations 1.22252 0.89033 1.00366 0.99667 1.59372 1.05574 1.16414 1.45222 1.21182 0.98905 0.85840 0.98585 1.19506 0.89150 0.96546 0.85034 0.93401 1.21731 1.31852 1.00947 1.02341 0.91036 1.24980 0.95036 0.97282 0.96598 1.69984 1.34930 1.36389 1.10521 0.86584 0.78369 0.84769 0.78550 1.19846 1.21146 1.21089 1.60910 1.26487 1.02140 1.38765 1.22113 0.91571 0.98030 0.97695 1.22388 0.95223 0.89070 0.98491 1.20307 0.94975 0.93679 0.97312 1.22418 1.00477 1.03767 0.94115 1.21916 1.01128 0.96283 1.00001 1.21687 0.94514 0.95770 0.92706 0.91812 0.92929 0.97061 0.89115 0.98676 0.93067 0.91514 0.95297 0.95454 0.96096 0.93097 0.94989 0.94786 0.86040 0.93320 0.92879 0.93118 0.94146 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.46 60.07 0.57 1.19 16 2 N -0.54 -11.26 2.55 -248.08 -0.63 -11.89 16 3 C 0.08 2.03 4.13 -6.75 -0.03 2.00 16 4 C 0.20 5.09 1.76 -69.48 -0.12 4.96 16 5 H 0.05 1.30 4.29 -51.93 -0.22 1.08 16 6 C -0.53 -14.22 7.42 -34.44 -0.26 -14.47 16 7 H 0.07 1.89 4.95 -52.49 -0.26 1.63 16 8 C 0.06 1.72 5.18 -17.82 -0.09 1.63 16 9 N -0.88 -24.58 11.82 55.43 0.66 -23.93 16 10 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.56 -12.36 4.19 -235.89 -0.99 -13.35 16 15 C 0.05 1.12 8.27 60.06 0.50 1.62 16 16 C 0.08 1.46 4.39 -2.82 -0.01 1.45 16 17 C -0.06 -1.11 0.72 -155.25 -0.11 -1.22 16 18 C -0.15 -2.98 7.07 37.16 0.26 -2.72 16 19 C -0.14 -1.93 7.97 37.16 0.30 -1.63 16 20 C 0.08 1.49 4.66 -4.38 -0.02 1.47 16 21 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 22 H 0.05 0.81 7.97 -51.93 -0.41 0.40 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 25 H 0.00 -0.12 8.06 -51.93 -0.42 -0.54 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.07 1.43 6.46 -51.93 -0.34 1.09 16 28 H 0.03 0.51 7.98 -51.93 -0.41 0.10 16 29 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 30 H 0.02 0.41 7.50 -51.93 -0.39 0.02 16 31 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 32 H 0.03 0.63 7.53 -51.93 -0.39 0.24 16 33 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 34 H 0.12 2.85 4.00 -51.93 -0.21 2.64 16 35 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.05 0.70 8.00 -51.93 -0.42 0.29 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.80 7.57 -51.93 -0.39 0.40 16 39 H 0.06 0.90 7.28 -51.93 -0.38 0.53 16 LS Contribution 282.17 15.07 4.25 4.25 Total: -1.00 -27.50 282.17 -7.34 -34.84 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.58 Total: -0.21 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 0.98 Total: -5.71 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.97 Total: -49.17 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.50 -7.34 -34.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219519287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.435 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds