Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46968 * 2 1 4 4 C 1.52996 * 109.47328 * 240.00277 * 2 1 3 5 5 C 1.53000 * 109.47328 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.46724 * 300.00183 * 5 4 2 7 7 O 1.42895 * 109.47621 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47233 * 59.99531 * 5 4 2 9 9 C 1.53006 * 109.46977 * 300.00464 * 8 5 4 10 10 C 1.52999 * 109.46623 * 179.97438 * 9 8 5 11 11 C 1.52997 * 109.47127 * 299.99541 * 9 8 5 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 9 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 C 1.52992 * 109.47223 * 60.00047 * 9 8 5 22 22 H 1.08992 * 109.47399 * 300.00026 * 1 2 3 23 23 H 1.09001 * 109.47194 * 60.00199 * 1 2 3 24 24 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46870 * 299.99783 * 4 2 1 26 26 H 1.09001 * 109.47372 * 59.99633 * 4 2 1 27 27 H 0.96705 * 113.99786 * 59.99762 * 7 5 4 28 28 H 1.08993 * 109.47662 * 180.02562 * 8 5 4 29 29 H 1.09000 * 109.46986 * 60.00203 * 8 5 4 30 30 H 1.09002 * 109.46716 * 179.97438 * 10 9 8 31 31 H 1.09000 * 109.47486 * 299.99829 * 10 9 8 32 32 H 1.09001 * 109.47362 * 60.00551 * 10 9 8 33 33 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 34 34 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 35 35 H 1.09001 * 109.47194 * 299.99650 * 12 11 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 9 37 37 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.47747 * 59.99547 * 21 9 8 39 39 H 1.09002 * 109.47103 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 1 3.9329 0.3072 -1.2497 7 8 4.0465 -1.3947 -2.4160 8 6 4.0806 -1.4414 -0.0003 9 6 3.5705 -0.7202 1.2490 10 6 4.0806 -1.4414 2.4982 11 6 4.0799 0.7225 1.2487 12 6 5.6099 0.7231 1.2484 13 6 6.1117 2.1441 1.2487 14 1 5.4095 2.9647 1.2487 15 6 7.4672 2.3966 1.2491 16 7 7.9050 3.6367 1.2489 17 14 8.6816 0.9772 1.2498 18 1 9.0038 0.6008 -0.1501 19 1 9.9246 1.3896 1.9501 20 1 8.0819 -0.1870 1.9499 21 6 2.0406 -0.7208 1.2493 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7488 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.7608 -0.9917 -3.2474 28 1 5.1705 -1.4407 -0.0002 29 1 3.7177 -2.4693 0.0000 30 1 3.7175 -0.9273 3.3881 31 1 3.7173 -2.4691 2.4982 32 1 5.1706 -1.4413 2.4982 33 1 3.7169 1.2362 2.1389 34 1 3.7162 1.2360 0.3587 35 1 5.9737 0.2095 2.1384 36 1 5.9733 0.2093 0.3585 37 1 8.8586 3.8143 1.2495 38 1 1.6776 -1.7486 1.2494 39 1 1.6772 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220708294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -113.502427 kcal Electronic energy + Delta-G solvation = -16873.823148 eV Core-core repulsion = 14392.758018 eV Total energy + Delta-G solvation = -2481.065130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03956 -37.38045 -35.82551 -34.58898 -31.86295 -31.14118 -27.70021 -27.25752 -26.96261 -22.91931 -22.67276 -21.31489 -19.37400 -18.76748 -17.87309 -16.51352 -16.18571 -15.90393 -15.48777 -15.27768 -15.05328 -14.70521 -14.02609 -13.80874 -13.46031 -13.24109 -13.17728 -12.93858 -12.76373 -12.68570 -12.49113 -12.20890 -11.94852 -11.73645 -11.68666 -11.47806 -11.38320 -11.18878 -10.92337 -10.76484 -10.62288 -10.51838 -8.30529 -6.32530 1.32595 1.32979 1.45426 2.33942 3.05319 3.27467 3.71485 3.78042 4.06108 4.10691 4.21297 4.32137 4.36904 4.51848 4.59185 4.68724 4.78541 4.83824 4.86097 4.92403 4.97914 5.01768 5.05823 5.10540 5.17388 5.23494 5.24639 5.32563 5.39800 5.43971 5.51879 5.62621 5.64224 5.72181 5.75512 6.30155 6.75834 6.90968 7.31642 8.86567 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029174 B = 0.008103 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.543683 B = 3454.767034 C = 3603.994051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.058 0.942 4 C -0.130 4.130 5 C 0.098 3.902 6 H 0.039 0.961 7 O -0.585 6.585 8 C -0.099 4.099 9 C -0.056 4.056 10 C -0.140 4.140 11 C -0.088 4.088 12 C -0.009 4.009 13 C -0.528 4.528 14 H 0.030 0.970 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.943 3.057 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.247 1.247 21 C -0.097 4.097 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.390 0.610 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -12.590 -3.142 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.076 0.924 4 C -0.168 4.168 5 C 0.040 3.960 6 H 0.057 0.943 7 O -0.393 6.393 8 C -0.136 4.136 9 C -0.056 4.056 10 C -0.197 4.197 11 C -0.125 4.125 12 C -0.046 4.046 13 C -0.566 4.566 14 H 0.049 0.951 15 C -0.191 4.191 16 N -0.594 5.594 17 Si 0.767 3.233 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.171 1.171 21 C -0.134 4.134 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.239 0.761 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.566 -12.876 -2.686 18.895 hybrid contribution 0.869 0.676 -0.445 1.188 sum -12.696 -12.200 -3.131 17.884 Atomic orbital electron populations 1.21759 0.93466 1.02361 1.02018 1.21143 0.96667 0.99252 0.94448 0.92393 1.22189 0.94190 1.01788 0.98627 1.21869 0.93916 0.94771 0.85437 0.94279 1.86450 1.77778 1.58161 1.16924 1.21503 1.00146 0.99364 0.92595 1.20534 0.96053 0.94488 0.94496 1.21870 1.00678 1.00420 0.96741 1.21497 0.95314 0.95369 1.00340 1.19596 0.94838 0.94090 0.96076 1.21580 0.92143 0.93215 1.49674 0.95120 1.25965 1.00670 0.98139 0.94367 1.70068 1.14989 1.21166 1.53129 0.85755 0.78174 0.80299 0.79081 1.19576 1.20726 1.17050 1.21632 0.92755 1.01229 0.97769 0.92394 0.92303 0.91752 0.90568 0.90829 0.76108 0.93485 0.90715 0.92235 0.91025 0.93900 0.93633 0.93087 0.96194 0.96993 0.92602 0.90491 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.10 -2.23 2.45 -10.79 -0.03 -2.25 16 3 H 0.06 1.59 6.43 -2.39 -0.02 1.57 16 4 C -0.13 -2.95 4.83 30.59 0.15 -2.80 16 5 C 0.10 2.91 3.19 30.60 0.10 3.01 16 6 H 0.04 1.37 6.43 -2.39 -0.02 1.35 16 7 O -0.59 -16.76 13.32 -148.98 -1.98 -18.74 16 8 C -0.10 -3.08 4.03 30.60 0.12 -2.95 16 9 C -0.06 -1.68 0.54 -52.18 -0.03 -1.71 16 10 C -0.14 -4.00 8.12 71.98 0.58 -3.41 16 11 C -0.09 -3.45 3.51 30.59 0.11 -3.34 16 12 C -0.01 -0.43 3.34 29.85 0.10 -0.33 16 13 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 15 C 0.00 0.30 5.47 84.66 0.46 0.76 16 16 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 17 Si 0.94 46.13 27.47 68.60 1.88 48.01 16 18 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 20 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 21 C -0.10 -2.31 4.01 30.59 0.12 -2.19 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.39 7.62 9.08 -74.05 -0.67 6.94 16 28 H 0.05 1.71 6.43 -2.39 -0.02 1.69 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.39 6.43 -2.39 -0.02 1.37 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 2.04 4.81 -2.39 -0.01 2.03 16 35 H 0.02 0.95 5.49 -2.39 -0.01 0.94 16 36 H 0.01 0.58 5.86 -2.39 -0.01 0.56 16 37 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.76 290.65 3.08 -65.67 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.28 Total: 14.22 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 2.60 Total: -48.17 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.30 Total: -61.00 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.98 Total: -18.74 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.01 kcal Total: -68.76 3.08 -65.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220708294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.828 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds