Wall clock time and date at job start Mon Mar 30 2020 03:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46846 * 111.00371 * 2 1 4 4 C 1.53034 * 109.52646 * 185.84039 * 3 2 1 5 5 C 1.53117 * 109.28040 * 300.81981 * 4 3 2 6 6 C 1.52995 * 109.52360 * 297.68815 * 5 4 3 7 7 C 1.52997 * 109.52231 * 177.56030 * 5 4 3 8 8 N 1.46904 * 109.46950 * 180.13086 * 7 5 4 9 9 C 1.46899 * 111.00029 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47107 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47116 * 59.99536 * 14 12 10 16 16 H 1.48500 * 109.46585 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46730 * 299.99515 * 14 12 10 18 18 C 1.53121 * 109.21052 * 57.62388 * 5 4 3 19 19 C 1.46846 * 111.00216 * 124.21273 * 2 1 3 20 20 H 1.08998 * 109.46641 * 59.99890 * 1 2 3 21 21 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46831 * 299.99842 * 1 2 3 23 23 H 1.08998 * 109.46283 * 65.82016 * 3 2 1 24 24 H 1.09001 * 109.45396 * 305.85256 * 3 2 1 25 25 H 1.09004 * 109.50397 * 180.87932 * 4 3 2 26 26 H 1.08998 * 109.50497 * 60.76427 * 4 3 2 27 27 H 1.09004 * 109.47192 * 299.87138 * 6 5 4 28 28 H 1.09003 * 109.47213 * 59.87241 * 6 5 4 29 29 H 1.09001 * 109.47505 * 179.86813 * 6 5 4 30 30 H 1.08995 * 109.47319 * 60.13015 * 7 5 4 31 31 H 1.09003 * 109.47435 * 300.12340 * 7 5 4 32 32 H 1.00908 * 110.99583 * 303.94989 * 8 7 5 33 33 H 1.09002 * 109.47043 * 299.99792 * 9 8 7 34 34 H 1.09001 * 109.47354 * 59.99854 * 9 8 7 35 35 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.50548 * 62.32039 * 18 5 4 37 37 H 1.09000 * 109.50558 * 182.43687 * 18 5 4 38 38 H 1.09003 * 109.46142 * 294.17550 * 19 2 1 39 39 H 1.08997 * 109.46569 * 54.15554 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5369 1.0143 6 6 3.7973 1.2374 2.3359 7 6 5.6361 0.4449 0.8404 8 7 6.2109 -0.3227 1.9532 9 6 7.6698 -0.4314 1.8197 10 6 8.2225 -1.2230 2.9769 11 1 7.5567 -1.6066 3.7357 12 6 9.5783 -1.4567 3.0672 13 7 10.3892 -0.9891 2.1433 14 14 10.2634 -2.4385 4.5012 15 1 9.6643 -3.7972 4.5019 16 1 11.7382 -2.5482 4.3662 17 1 9.9322 -1.7508 5.7750 18 6 3.5184 -0.8716 1.0223 19 6 1.9953 -0.7708 1.1337 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.7325 1.8608 0.9375 24 1 1.5635 1.9256 -0.8330 25 1 3.9100 2.3512 -0.1310 26 1 3.7814 0.8568 -1.0906 27 1 4.2232 2.2408 2.3284 28 1 2.7162 1.3025 2.4590 29 1 4.2232 0.6680 3.1620 30 1 6.0625 1.4480 0.8326 31 1 5.8644 -0.0543 -0.1014 32 1 5.9587 0.0842 2.8415 33 1 7.9124 -0.9364 0.8847 34 1 8.1099 0.5658 1.8189 35 1 11.3431 -1.1531 2.2071 36 1 3.7816 -1.3847 0.0974 37 1 3.9103 -1.4295 1.8728 38 1 1.7325 -0.2709 2.0660 39 1 1.5637 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226350901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:37 Heat of formation + Delta-G solvation = -11.434520 kcal Electronic energy + Delta-G solvation = -16262.884383 eV Core-core repulsion = 13818.538001 eV Total energy + Delta-G solvation = -2444.346383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.62647 -36.06054 -33.69742 -31.95303 -30.73325 -28.47621 -27.06281 -25.72967 -23.81283 -23.02881 -21.55286 -20.76909 -18.06246 -16.51433 -15.65633 -15.08218 -14.90692 -14.66507 -14.52086 -14.10758 -13.85407 -13.29765 -12.63491 -12.52362 -12.35158 -12.05667 -11.90953 -11.49330 -11.45238 -11.21779 -11.17916 -10.88721 -10.76618 -10.67548 -10.20485 -10.12002 -9.92320 -9.72022 -9.11214 -8.44349 -8.26941 -7.20320 -5.99964 -4.01869 3.35267 3.39056 3.42181 3.95464 4.45291 4.85121 4.90905 5.01707 5.14870 5.33201 5.35722 5.36607 5.44099 5.48288 5.60702 5.67810 5.70982 5.73312 5.77840 5.90956 6.03718 6.16440 6.23593 6.24495 6.31918 6.43481 6.50656 6.73666 6.77154 7.09728 7.13644 7.31836 7.47825 7.82051 8.17794 8.45903 8.67506 9.07492 9.62896 11.11176 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.055738 B = 0.005080 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.230163 B = 5510.544342 C = 5719.930033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.057 3.943 4 C -0.106 4.106 5 C -0.058 4.058 6 C -0.146 4.146 7 C 0.071 3.929 8 N -0.687 5.687 9 C 0.194 3.806 10 C -0.513 4.513 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.094 4.094 19 C 0.052 3.948 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.021 0.979 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.326 0.674 33 H 0.027 0.973 34 H -0.016 1.016 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 4.433 -3.064 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.070 4.070 4 C -0.145 4.145 5 C -0.059 4.059 6 C -0.203 4.203 7 C -0.060 4.060 8 N -0.318 5.318 9 C 0.067 3.933 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.132 4.132 19 C -0.075 4.075 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.045 0.955 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.151 3.594 -3.842 17.940 hybrid contribution 0.508 0.833 1.643 1.911 sum -16.644 4.427 -2.199 17.362 Atomic orbital electron populations 1.22335 0.87972 1.01794 1.00187 1.61935 1.06904 1.13893 1.44081 1.22093 0.95984 0.88988 0.99978 1.21627 0.93663 0.99992 0.99185 1.20597 0.95505 0.95400 0.94396 1.21971 1.00542 1.00073 0.97695 1.21892 0.91984 0.95511 0.96573 1.60706 1.14598 1.53114 1.03384 1.19535 0.80906 0.95093 0.97782 1.21156 0.91948 1.33687 1.08381 0.92090 1.24990 0.97026 0.96108 0.96452 1.69957 1.03736 1.46020 1.34117 0.86553 0.77626 0.80626 0.82536 1.20163 1.21367 1.20318 1.21502 0.91871 0.96300 1.03503 1.22233 0.96954 0.97443 0.90877 0.91695 0.91563 0.96093 0.94854 0.91366 0.91829 0.91107 0.93231 0.93230 0.91788 0.96634 0.91841 0.85613 0.95505 0.99814 0.92901 0.91509 0.89823 0.94944 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.59 60.06 0.58 0.82 16 2 N -0.54 -6.51 4.91 -242.96 -1.19 -7.70 16 3 C 0.06 0.66 5.22 -3.84 -0.02 0.64 16 4 C -0.11 -1.35 4.88 -26.65 -0.13 -1.48 16 5 C -0.06 -0.84 0.59 -154.39 -0.09 -0.94 16 6 C -0.15 -1.97 7.57 37.16 0.28 -1.69 16 7 C 0.07 1.27 4.65 -3.82 -0.02 1.26 16 8 N -0.69 -14.74 5.76 -115.05 -0.66 -15.40 16 9 C 0.19 5.16 5.44 -4.98 -0.03 5.14 16 10 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 11 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.09 -1.37 4.69 -26.64 -0.12 -1.49 16 19 C 0.05 0.65 5.22 -3.83 -0.02 0.63 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 22 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.03 0.38 6.51 -51.93 -0.34 0.04 16 24 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.61 4.93 -51.93 -0.26 0.35 16 29 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.33 6.73 6.77 -39.29 -0.27 6.46 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.34 7.69 -51.93 -0.40 0.94 16 38 H 0.03 0.40 6.52 -51.93 -0.34 0.06 16 39 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -29.79 298.28 -8.61 -38.40 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.97 Total: 0.46 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 0.01 Total: -10.64 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -1.12 Total: -49.60 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.79 -8.61 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226350901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.967 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds