Wall clock time and date at job start Mon Mar 30 2020 03:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46886 * 2 1 4 4 C 1.52999 * 109.47325 * 120.00482 * 2 1 3 5 5 N 1.46501 * 109.47087 * 175.14978 * 4 2 1 6 6 C 1.36936 * 120.00116 * 95.46624 * 5 4 2 7 7 H 1.07999 * 119.99930 * 217.17775 * 6 5 4 8 8 C 1.38813 * 119.99987 * 37.17957 * 6 5 4 9 9 N 1.31620 * 119.99649 * 211.81825 * 8 6 5 10 10 Si 1.86798 * 120.00030 * 31.81224 * 8 6 5 11 11 H 1.48494 * 109.47036 * 95.11093 * 10 8 6 12 12 H 1.48497 * 109.47151 * 335.10483 * 10 8 6 13 13 H 1.48501 * 109.46670 * 215.10475 * 10 8 6 14 14 C 1.46503 * 119.99865 * 275.46563 * 5 4 2 15 15 C 1.53000 * 109.47048 * 270.00312 * 14 5 4 16 16 H 1.09010 * 110.36698 * 297.34737 * 15 14 5 17 17 C 1.54376 * 110.41312 * 175.00067 * 15 14 5 18 18 C 1.54262 * 105.06198 * 217.36530 * 17 15 14 19 19 C 1.54381 * 105.05663 * 0.02562 * 18 17 15 20 20 N 1.48553 * 110.41395 * 59.82324 * 15 14 5 21 21 H 1.08997 * 109.47311 * 304.11796 * 1 2 3 22 22 H 1.09000 * 109.47551 * 64.12032 * 1 2 3 23 23 H 1.09005 * 109.46941 * 184.12392 * 1 2 3 24 24 H 1.08997 * 109.46967 * 240.00244 * 2 1 3 25 25 H 1.08997 * 109.47226 * 54.90753 * 3 2 1 26 26 H 1.09009 * 109.46960 * 174.90025 * 3 2 1 27 27 H 1.08997 * 109.47673 * 294.89921 * 3 2 1 28 28 H 1.08994 * 109.47182 * 55.14702 * 4 2 1 29 29 H 1.09001 * 109.47007 * 295.14929 * 4 2 1 30 30 H 0.97003 * 119.99740 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47147 * 29.99696 * 14 5 4 32 32 H 1.08991 * 109.47252 * 150.00160 * 14 5 4 33 33 H 1.09003 * 110.32400 * 336.26525 * 17 15 14 34 34 H 1.09008 * 110.32640 * 98.36404 * 17 15 14 35 35 H 1.09000 * 110.31964 * 118.89725 * 18 17 15 36 36 H 1.08999 * 110.32409 * 241.00312 * 18 17 15 37 37 H 1.09005 * 110.40615 * 142.63535 * 19 18 17 38 38 H 1.09002 * 110.40913 * 264.95102 * 19 18 17 39 39 H 1.00899 * 111.00600 * 277.82381 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5004 -0.8233 1.1921 6 6 4.2772 0.1107 1.8243 7 1 5.2008 0.4403 1.3720 8 6 3.8774 0.6336 3.0464 9 7 4.1874 1.8724 3.3651 10 14 2.8995 -0.4208 4.2386 11 1 3.8239 -1.0516 5.2146 12 1 2.1769 -1.4779 3.4865 13 1 1.9201 0.4290 4.9623 14 6 4.1297 -1.9244 0.4588 15 6 4.3394 -3.1110 1.4016 16 1 5.0200 -2.8387 2.2085 17 6 4.8863 -4.3270 0.6235 18 6 4.2000 -5.5526 1.2611 19 6 3.2958 -4.9738 2.3705 20 7 3.0387 -3.5723 1.9512 21 1 -0.3634 0.5764 0.8507 22 1 -0.3634 0.4485 -0.9246 23 1 -0.3633 -1.0251 0.0739 24 1 1.8933 -0.5138 -0.8900 25 1 1.6040 1.9820 0.8408 26 1 3.1262 1.4439 0.0914 27 1 1.7531 1.9293 -0.9321 28 1 1.6075 -1.7208 1.2936 29 1 1.7494 -0.1599 2.1371 30 1 3.9077 2.2380 4.2190 31 1 3.4854 -2.2261 -0.3670 32 1 5.0927 -1.5967 0.0674 33 1 4.6221 -4.2513 -0.4314 34 1 5.9682 -4.3946 0.7382 35 1 3.5990 -6.0785 0.5193 36 1 4.9449 -6.2236 1.6888 37 1 2.3610 -5.5315 2.4284 38 1 3.8109 -4.9961 3.3309 39 1 2.7566 -3.0056 2.7369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232622000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:37 Heat of formation + Delta-G solvation = -4.538311 kcal Electronic energy + Delta-G solvation = -17069.704810 eV Core-core repulsion = 14625.657470 eV Total energy + Delta-G solvation = -2444.047341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.73002 -38.01287 -35.04444 -33.59701 -31.08395 -30.62527 -27.85981 -27.27406 -26.59805 -23.17028 -21.70837 -21.17306 -20.71157 -18.66329 -17.79312 -16.90000 -16.24085 -15.71487 -15.58905 -15.14334 -14.89270 -14.44193 -14.16156 -13.71546 -13.41774 -13.07786 -13.01092 -12.98782 -12.83023 -12.59483 -12.23377 -12.12464 -12.10676 -11.74651 -11.63064 -11.49533 -11.46336 -11.27867 -11.00634 -10.51170 -9.48787 -8.57263 -8.17223 -5.38943 1.33333 1.41560 1.48861 2.48427 3.05685 3.41288 3.53803 3.96878 4.01063 4.20789 4.24818 4.35023 4.40168 4.51031 4.69012 4.73663 4.85576 4.87872 4.92688 4.98587 4.99618 5.04275 5.08442 5.13633 5.20121 5.28240 5.29682 5.37280 5.40339 5.43378 5.67529 5.79965 6.00459 6.03186 6.26854 6.38074 7.11947 7.78575 8.24166 9.03014 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.011703 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.618603 B = 2391.895712 C = 2907.538827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.123 4.123 4 C 0.155 3.845 5 N -0.605 5.605 6 C -0.241 4.241 7 H 0.034 0.966 8 C -0.006 4.006 9 N -0.934 5.934 10 Si 0.902 3.098 11 H -0.308 1.308 12 H -0.222 1.222 13 H -0.307 1.307 14 C 0.164 3.836 15 C 0.046 3.954 16 H 0.017 0.983 17 C -0.115 4.115 18 C -0.113 4.113 19 C 0.026 3.974 20 N -0.666 5.666 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -12.938 -5.877 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.180 4.180 4 C 0.030 3.970 5 N -0.326 5.326 6 C -0.371 4.371 7 H 0.052 0.948 8 C -0.204 4.204 9 N -0.577 5.577 10 Si 0.731 3.269 11 H -0.237 1.237 12 H -0.146 1.146 13 H -0.235 1.235 14 C 0.039 3.961 15 C -0.066 4.066 16 H 0.035 0.965 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.104 4.104 20 N -0.298 5.298 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.797 -12.945 -6.426 15.228 hybrid contribution 0.546 0.446 2.163 2.275 sum -4.251 -12.499 -4.263 13.873 Atomic orbital electron populations 1.21748 0.94450 1.01801 1.01504 1.21604 0.95644 0.96221 0.99579 1.21552 1.01313 0.96216 0.98923 1.21294 0.83004 0.97786 0.94912 1.44124 1.01277 1.26872 1.60348 1.18429 1.05322 1.14213 0.99170 0.94795 1.25881 0.99452 0.96236 0.98796 1.70139 1.50713 1.13772 1.23124 0.86548 0.78278 0.81808 0.80232 1.23722 1.14559 1.23507 1.20960 0.96497 0.85721 0.92956 1.23130 0.89670 0.96553 0.97281 0.96501 1.22305 0.99744 0.93089 1.00229 1.22244 0.98309 0.97078 0.97503 1.23035 0.99977 0.90576 0.96767 1.63814 1.28440 1.03123 1.34381 0.93888 0.91755 0.91900 0.91761 0.95782 0.93763 0.93195 0.91849 0.95802 0.93402 0.92004 0.93773 0.90305 0.91115 0.90080 0.90368 0.89465 0.95475 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.19 71.98 0.66 -3.41 16 2 C -0.11 -4.03 3.12 -10.80 -0.03 -4.06 16 3 C -0.12 -5.05 8.96 71.98 0.64 -4.41 16 4 C 0.16 6.43 2.87 86.38 0.25 6.68 16 5 N -0.60 -27.14 1.75 -702.01 -1.23 -28.37 16 6 C -0.24 -13.18 8.05 84.03 0.68 -12.50 16 7 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 8 C -0.01 -0.36 5.05 84.86 0.43 0.07 16 9 N -0.93 -57.70 13.97 21.65 0.30 -57.39 16 10 Si 0.90 44.43 25.82 68.60 1.77 46.20 16 11 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 12 H -0.22 -9.69 3.74 99.48 0.37 -9.32 16 13 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 14 C 0.16 6.25 5.34 86.38 0.46 6.71 16 15 C 0.05 1.59 3.44 45.06 0.15 1.74 16 16 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 17 C -0.11 -2.98 6.55 31.49 0.21 -2.78 16 18 C -0.11 -2.52 7.00 31.49 0.22 -2.30 16 19 C 0.03 0.69 7.47 86.46 0.65 1.33 16 20 N -0.67 -22.45 5.87 -479.06 -2.81 -25.27 16 21 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 2.14 6.32 -2.38 -0.02 2.12 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 2.46 6.70 -2.39 -0.02 2.45 16 29 H 0.02 1.10 4.48 -2.39 -0.01 1.09 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.06 2.15 8.00 -2.39 -0.02 2.13 16 32 H 0.04 1.71 8.04 -2.39 -0.02 1.70 16 33 H 0.08 1.89 7.82 -2.39 -0.02 1.87 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.33 12.41 5.87 -89.69 -0.53 11.88 16 Total: -1.00 -61.83 293.68 2.48 -59.35 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.13 Total: 18.42 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.31 Total: -12.93 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -3.74 Total: -111.03 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.77 Total: 46.20 kcal Total: -61.83 2.48 -59.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232622000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.811 kcal (2) G-P(sol) polarization free energy of solvation -61.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds