Wall clock time and date at job start Mon Mar 30 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.53002 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.36928 * 120.00566 * 270.90730 * 5 4 3 7 7 H 1.08001 * 119.99926 * 325.93347 * 6 5 4 8 8 C 1.38816 * 120.00406 * 145.92083 * 6 5 4 9 9 N 1.31623 * 119.99556 * 336.73392 * 8 6 5 10 10 Si 1.86800 * 120.00242 * 156.72505 * 8 6 5 11 11 H 1.48502 * 109.46920 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47008 * 120.00339 * 10 8 6 13 13 H 1.48495 * 109.47183 * 240.00511 * 10 8 6 14 14 C 1.46504 * 119.99763 * 90.91318 * 5 4 3 15 15 C 1.53001 * 109.47123 * 89.99962 * 14 5 4 16 16 H 1.08998 * 110.72705 * 61.90269 * 15 14 5 17 17 C 1.54939 * 110.66748 * 185.00078 * 15 14 5 18 18 C 1.54592 * 102.92460 * 155.84679 * 17 15 14 19 19 C 1.53999 * 105.14009 * 338.04048 * 18 17 15 20 20 N 1.47907 * 107.05513 * 358.77752 * 19 18 17 21 21 H 1.09004 * 109.47397 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47477 * 300.00359 * 1 2 3 23 23 H 1.08996 * 109.47201 * 60.00552 * 1 2 3 24 24 H 1.09000 * 109.47477 * 239.99640 * 2 1 3 25 25 H 1.09010 * 109.47074 * 119.99234 * 2 1 3 26 26 H 1.09000 * 109.47714 * 59.99822 * 3 2 1 27 27 H 1.08996 * 109.47105 * 299.99463 * 3 2 1 28 28 H 1.09000 * 109.46916 * 59.99329 * 4 3 2 29 29 H 1.09005 * 109.47190 * 299.99736 * 4 3 2 30 30 H 0.97000 * 119.99743 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47234 * 330.00040 * 14 5 4 32 32 H 1.08992 * 109.47170 * 209.99736 * 14 5 4 33 33 H 1.09005 * 110.72536 * 37.48785 * 17 15 14 34 34 H 1.08997 * 110.72433 * 274.20898 * 17 15 14 35 35 H 1.09001 * 110.31152 * 96.95957 * 18 17 15 36 36 H 1.09002 * 110.31417 * 219.02997 * 18 17 15 37 37 H 1.09002 * 109.91320 * 118.12320 * 19 18 17 38 38 H 1.08989 * 109.92078 * 239.22459 * 19 18 17 39 39 H 1.00898 * 110.99792 * 264.81205 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2683 3.4753 -1.1872 7 1 4.6154 2.9269 -2.0504 8 6 4.0348 4.8405 -1.2800 9 7 3.2106 5.4259 -0.4372 10 14 4.8905 5.8468 -2.6008 11 1 5.7590 4.9588 -3.4147 12 1 3.8729 6.4813 -3.4766 13 1 5.7194 6.9000 -1.9615 14 6 4.3220 3.5080 1.2671 15 6 5.7736 3.2654 1.6852 16 1 6.4616 3.6760 0.9462 17 6 6.0483 3.8715 3.0844 18 6 7.2470 3.0383 3.5929 19 6 7.2024 1.7315 2.7794 20 7 6.0256 1.8156 1.8875 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9329 0.9288 -0.8908 29 1 3.9337 0.9286 0.8892 30 1 3.0471 6.3798 -0.5022 31 1 3.6530 3.1200 2.0352 32 1 4.1531 4.5778 1.1447 33 1 5.1846 3.7428 3.7368 34 1 6.3175 4.9246 3.0025 35 1 8.1816 3.5677 3.4075 36 1 7.1371 2.8273 4.6567 37 1 8.1115 1.6322 2.1862 38 1 7.1027 0.8791 3.4512 39 1 5.2245 1.3638 2.3023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232966443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:46 Heat of formation + Delta-G solvation = 1.882838 kcal Electronic energy + Delta-G solvation = -16542.077080 eV Core-core repulsion = 14098.308181 eV Total energy + Delta-G solvation = -2443.768899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.23085 -35.85540 -33.84496 -31.20083 -29.57243 -29.35325 -27.46859 -24.77941 -23.58364 -21.07196 -20.41415 -20.09095 -19.69419 -16.65936 -15.33909 -14.88195 -14.72131 -14.57339 -13.82128 -13.55487 -13.27374 -13.18141 -13.03513 -12.06893 -11.88676 -11.61598 -11.27760 -11.08412 -10.95695 -10.88813 -10.74560 -10.54307 -10.37626 -10.26273 -10.10226 -10.08694 -9.74178 -9.64413 -9.47081 -8.41274 -7.92365 -6.47817 -5.69318 -3.20244 3.40294 3.49403 3.53162 4.56352 4.81735 5.13905 5.22861 5.38440 5.41261 5.52374 5.57731 5.72188 5.74338 5.87534 5.98214 6.11945 6.16340 6.23870 6.27121 6.33602 6.40748 6.45987 6.51895 6.54458 6.58283 6.67205 6.81714 6.88112 7.19717 7.23582 7.39147 7.44139 7.74495 7.91606 8.04351 8.60175 9.29068 9.94263 10.51187 11.30362 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.012417 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.212969 B = 2254.505429 C = 3869.336205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.136 4.136 4 C 0.156 3.844 5 N -0.576 5.576 6 C -0.242 4.242 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.059 3.941 16 H 0.082 0.918 17 C -0.153 4.153 18 C -0.151 4.151 19 C 0.041 3.959 20 N -0.658 5.658 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.251 0.749 31 H 0.019 0.981 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -6.509 6.432 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.029 3.971 5 N -0.294 5.294 6 C -0.372 4.372 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.219 1.219 13 H -0.217 1.217 14 C 0.021 3.979 15 C -0.052 4.052 16 H 0.100 0.900 17 C -0.193 4.193 18 C -0.191 4.191 19 C -0.090 4.090 20 N -0.286 5.286 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.247 -6.501 5.764 8.974 hybrid contribution 0.090 1.004 0.332 1.061 sum 2.336 -5.497 6.096 8.535 Atomic orbital electron populations 1.21763 0.96965 1.00285 1.01605 1.21526 0.94914 0.98776 1.00832 1.22228 0.99838 0.93727 1.01857 1.20875 0.90468 0.87309 0.98435 1.43657 1.74001 1.09807 1.01952 1.19114 1.36853 0.91073 0.90149 0.92229 1.25022 0.97799 0.98589 0.98162 1.69987 1.34019 1.10150 1.39400 0.86388 0.79486 0.80315 0.81644 1.20195 1.21927 1.21665 1.21063 0.88493 1.02080 0.86227 1.23560 1.02176 0.85855 0.93649 0.89953 1.23144 0.97144 0.99930 0.99074 1.22799 0.99124 0.97761 0.99387 1.22718 0.96367 0.95939 0.93946 1.62846 1.06443 1.14304 1.44967 0.93804 0.93200 0.92986 0.92741 0.93020 0.93327 0.92085 0.94410 0.94372 0.93860 0.96216 0.87848 0.92108 0.91547 0.92020 0.92486 0.91525 0.92796 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.15 0.37 -1.74 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.09 16 3 C -0.14 -2.71 5.54 -26.73 -0.15 -2.86 16 4 C 0.16 3.30 5.41 -4.04 -0.02 3.27 16 5 N -0.58 -14.08 2.39 -173.24 -0.41 -14.49 16 6 C -0.24 -6.60 9.48 -15.06 -0.14 -6.74 16 7 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 8 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 9 N -0.89 -25.41 11.34 55.49 0.63 -24.78 16 10 Si 0.89 21.77 29.61 -169.99 -5.03 16.73 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.15 3.40 4.82 -4.04 -0.02 3.38 16 15 C 0.06 1.18 3.55 -65.78 -0.23 0.95 16 16 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 17 C -0.15 -2.54 6.50 -24.87 -0.16 -2.70 16 18 C -0.15 -2.15 6.93 -25.37 -0.18 -2.32 16 19 C 0.04 0.61 7.52 -2.75 -0.02 0.58 16 20 N -0.66 -11.79 6.55 -103.17 -0.68 -12.46 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 29 H 0.04 0.74 6.17 -51.93 -0.32 0.42 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 32 H 0.10 2.71 5.33 -51.93 -0.28 2.44 16 33 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.70 8.14 -51.94 -0.42 0.27 16 39 H 0.33 5.63 7.24 -39.29 -0.28 5.35 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -27.87 306.71 -8.85 -36.73 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.18 Total: 3.91 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.80 Total: -10.26 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.46 Total: -51.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.87 -8.85 -36.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232966443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.609 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds