Wall clock time and date at job start Mon Mar 30 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 C 1.53007 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47360 * 177.57624 * 4 3 2 6 6 C 1.46961 * 110.99813 * 296.04801 * 5 4 3 7 7 H 1.09000 * 109.49163 * 63.22662 * 6 5 4 8 8 C 1.50694 * 109.49161 * 303.15473 * 6 5 4 9 9 H 1.08004 * 119.99830 * 0.02562 * 8 6 5 10 10 C 1.37872 * 120.00255 * 179.97438 * 8 6 5 11 11 N 1.31520 * 120.00132 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 120.00158 * 0.02562 * 10 8 6 13 13 H 1.48499 * 109.46990 * 89.99466 * 12 10 8 14 14 H 1.48499 * 109.47171 * 210.00136 * 12 10 8 15 15 H 1.48499 * 109.46579 * 330.00049 * 12 10 8 16 16 C 1.53055 * 109.36447 * 183.18838 * 6 5 4 17 17 N 1.46959 * 109.36385 * 301.60356 * 16 6 5 18 18 C 1.46953 * 110.88284 * 59.31797 * 17 16 6 19 19 C 1.46956 * 111.00472 * 59.84860 * 5 4 3 20 20 H 1.09004 * 109.48823 * 296.78108 * 19 5 4 21 21 C 1.53002 * 109.48790 * 56.84310 * 19 5 4 22 22 H 1.09000 * 109.47503 * 300.00078 * 1 2 3 23 23 H 1.08998 * 109.47518 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47146 * 59.99933 * 1 2 3 25 25 H 1.09003 * 109.47146 * 120.00067 * 2 1 3 26 26 H 1.09000 * 109.47503 * 239.99922 * 2 1 3 27 27 H 1.09000 * 109.47392 * 299.99517 * 3 2 1 28 28 H 1.09003 * 109.47124 * 60.00417 * 3 2 1 29 29 H 1.09000 * 109.47068 * 297.57767 * 4 3 2 30 30 H 1.09000 * 109.46693 * 57.57356 * 4 3 2 31 31 H 0.97005 * 119.99933 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.48770 * 61.56275 * 16 6 5 33 33 H 1.08993 * 109.49076 * 181.62974 * 16 6 5 34 34 H 1.00899 * 110.99776 * 295.44427 * 17 16 6 35 35 H 1.09001 * 109.48983 * 60.64876 * 18 17 16 36 36 H 1.09006 * 109.48666 * 180.69150 * 18 17 16 37 37 H 1.08992 * 109.46811 * 53.71987 * 21 19 5 38 38 H 1.08992 * 109.47199 * 173.72451 * 21 19 5 39 39 H 1.08998 * 109.47050 * 293.72362 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8262 -0.0579 6 6 3.6677 3.4706 -1.3192 7 1 2.5808 3.5325 -1.3736 8 6 4.1842 2.6599 -2.4798 9 1 4.7471 1.7561 -2.2990 10 6 3.9374 3.0715 -3.7723 11 7 4.3879 2.3637 -4.7851 12 14 2.9633 4.6344 -4.0850 13 1 3.8924 5.7905 -4.1582 14 1 2.2259 4.5098 -5.3679 15 1 1.9971 4.8453 -2.9772 16 6 4.2627 4.8796 -1.3756 17 7 3.7881 5.6555 -0.2213 18 6 4.1801 5.0111 1.0399 19 6 3.5850 3.6022 1.0963 20 1 2.4972 3.6656 1.0694 21 6 4.0249 2.9137 2.3899 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9329 0.9670 0.9118 30 1 3.9336 0.8914 -0.8666 31 1 4.2145 2.6535 -5.6945 32 1 5.3506 4.8163 -1.3486 33 1 3.9494 5.3701 -2.2972 34 1 2.7891 5.7912 -0.2629 35 1 5.2670 4.9493 1.0943 36 1 3.8067 5.5978 1.8793 37 1 5.1023 2.7512 2.3667 38 1 3.7708 3.5445 3.2417 39 1 3.5147 1.9550 2.4828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249848280.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:28 Heat of formation + Delta-G solvation = 1.068172 kcal Electronic energy + Delta-G solvation = -17155.837773 eV Core-core repulsion = 14712.033548 eV Total energy + Delta-G solvation = -2443.804225 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19491 -35.35836 -33.36161 -33.02564 -31.33528 -28.48627 -26.88284 -25.36053 -23.83209 -21.63793 -21.15468 -20.94324 -18.66095 -16.76507 -15.73773 -15.38728 -14.89008 -14.58807 -14.07067 -13.99712 -13.46765 -12.85669 -12.56814 -12.49104 -12.38950 -11.87154 -11.68959 -11.43934 -11.35244 -11.13046 -10.94536 -10.76381 -10.67164 -10.50007 -10.41515 -10.18978 -9.76326 -9.43542 -9.34197 -8.67016 -7.74875 -7.28692 -6.11503 -4.09700 3.23502 3.31032 3.34005 4.33693 4.64192 4.90942 5.18245 5.23894 5.28461 5.36612 5.48188 5.57533 5.65143 5.78974 5.85438 5.96408 6.05442 6.06756 6.12417 6.15762 6.19333 6.31681 6.34865 6.40145 6.40734 6.51493 6.56260 6.62252 6.86362 6.96039 7.17135 7.32590 7.68111 7.85520 7.94575 8.07204 8.61774 8.95234 9.49661 11.01040 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.012923 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.870494 B = 2166.240626 C = 3078.818294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.153 4.153 4 C 0.063 3.937 5 N -0.514 5.514 6 C 0.155 3.845 7 H 0.000 1.000 8 C -0.501 4.501 9 H 0.083 0.917 10 C 0.072 3.928 11 N -0.896 5.896 12 Si 0.880 3.120 13 H -0.275 1.275 14 H -0.296 1.296 15 H -0.271 1.271 16 C 0.053 3.947 17 N -0.697 5.697 18 C 0.069 3.931 19 C 0.037 3.963 20 H 0.031 0.969 21 C -0.139 4.139 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.327 0.673 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 0.349 11.330 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.192 4.192 4 C -0.065 4.065 5 N -0.238 5.238 6 C 0.046 3.954 7 H 0.017 0.983 8 C -0.540 4.540 9 H 0.101 0.899 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.711 3.289 13 H -0.201 1.201 14 H -0.223 1.223 15 H -0.197 1.197 16 C -0.075 4.075 17 N -0.323 5.323 18 C -0.062 4.062 19 C -0.074 4.074 20 H 0.049 0.951 21 C -0.197 4.197 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.755 0.799 11.130 11.774 hybrid contribution -2.105 0.095 -0.394 2.143 sum -5.860 0.895 10.736 12.264 Atomic orbital electron populations 1.21766 0.96654 1.00882 1.01427 1.21420 0.95132 0.97392 1.01674 1.22204 0.98972 0.96507 1.01477 1.22138 0.91482 0.90999 1.01920 1.62285 1.58508 1.01511 1.01480 1.20338 0.93686 0.92780 0.88571 0.98286 1.20885 1.34942 1.10154 0.88025 0.89876 1.24909 0.95341 0.96627 0.96133 1.69871 1.45869 1.38890 0.98790 0.86984 0.80621 0.84249 0.77085 1.20139 1.22304 1.19652 1.22639 1.01452 0.92479 0.90979 1.60885 1.18295 1.50210 1.02948 1.22063 1.01239 0.91085 0.91781 1.22386 0.96770 0.95797 0.92450 0.95114 1.21779 1.02142 0.99947 0.95850 0.93395 0.93260 0.92818 0.92754 0.91669 0.91281 0.93343 0.92533 0.89218 0.92558 0.90172 0.92168 0.85678 0.90493 0.91628 0.91881 0.93097 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.76 5.93 -26.74 -0.16 -1.92 16 3 C -0.15 -2.64 4.50 -26.73 -0.12 -2.76 16 4 C 0.06 1.18 4.62 -3.83 -0.02 1.16 16 5 N -0.51 -10.41 4.54 -219.95 -1.00 -11.41 16 6 C 0.16 3.59 1.14 -68.81 -0.08 3.51 16 7 H 0.00 0.00 5.57 -51.93 -0.29 -0.29 16 8 C -0.50 -13.63 8.46 -34.45 -0.29 -13.92 16 9 H 0.08 2.47 6.71 -52.48 -0.35 2.12 16 10 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 11 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 12 Si 0.88 21.61 24.36 -169.99 -4.14 17.47 16 13 H -0.27 -6.64 6.88 56.52 0.39 -6.25 16 14 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 16 C 0.05 1.18 5.47 -3.76 -0.02 1.16 16 17 N -0.70 -13.10 6.91 -113.64 -0.79 -13.89 16 18 C 0.07 1.13 6.00 -3.77 -0.02 1.11 16 19 C 0.04 0.62 2.06 -67.66 -0.14 0.48 16 20 H 0.03 0.54 6.54 -51.93 -0.34 0.20 16 21 C -0.14 -1.94 8.65 37.16 0.32 -1.62 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.40 6.45 -51.93 -0.33 1.06 16 28 H 0.05 0.79 6.61 -51.93 -0.34 0.45 16 29 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 30 H 0.09 1.94 6.15 -51.93 -0.32 1.62 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 32 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 33 H 0.06 1.41 3.33 -51.93 -0.17 1.24 16 34 H 0.33 5.87 8.89 -39.29 -0.35 5.52 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.72 6.73 -51.93 -0.35 0.37 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -28.50 285.59 -7.69 -36.19 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.59 Total: 5.85 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.26 Total: -12.46 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -1.01 Total: -51.35 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.50 -7.69 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249848280.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.259 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds