Wall clock time and date at job start Mon Mar 30 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 C 1.53007 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47360 * 177.57624 * 4 3 2 6 6 C 1.46961 * 110.99813 * 296.04801 * 5 4 3 7 7 H 1.09000 * 109.49163 * 63.22662 * 6 5 4 8 8 C 1.50694 * 109.49161 * 303.15473 * 6 5 4 9 9 H 1.08004 * 119.99830 * 0.02562 * 8 6 5 10 10 C 1.37872 * 120.00255 * 179.97438 * 8 6 5 11 11 N 1.31520 * 120.00132 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 120.00158 * 0.02562 * 10 8 6 13 13 H 1.48499 * 109.46990 * 89.99466 * 12 10 8 14 14 H 1.48499 * 109.47171 * 210.00136 * 12 10 8 15 15 H 1.48499 * 109.46579 * 330.00049 * 12 10 8 16 16 C 1.53055 * 109.36447 * 183.18838 * 6 5 4 17 17 N 1.46959 * 109.36385 * 301.60356 * 16 6 5 18 18 C 1.46953 * 110.88284 * 59.31797 * 17 16 6 19 19 C 1.46956 * 111.00472 * 59.84860 * 5 4 3 20 20 H 1.09004 * 109.48823 * 296.78108 * 19 5 4 21 21 C 1.53002 * 109.48790 * 56.84310 * 19 5 4 22 22 H 1.09000 * 109.47503 * 300.00078 * 1 2 3 23 23 H 1.08998 * 109.47518 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47146 * 59.99933 * 1 2 3 25 25 H 1.09003 * 109.47146 * 120.00067 * 2 1 3 26 26 H 1.09000 * 109.47503 * 239.99922 * 2 1 3 27 27 H 1.09000 * 109.47392 * 299.99517 * 3 2 1 28 28 H 1.09003 * 109.47124 * 60.00417 * 3 2 1 29 29 H 1.09000 * 109.47068 * 297.57767 * 4 3 2 30 30 H 1.09000 * 109.46693 * 57.57356 * 4 3 2 31 31 H 0.97005 * 119.99933 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.48770 * 61.56275 * 16 6 5 33 33 H 1.08993 * 109.49076 * 181.62974 * 16 6 5 34 34 H 1.00899 * 110.99776 * 295.44427 * 17 16 6 35 35 H 1.09001 * 109.48983 * 60.64876 * 18 17 16 36 36 H 1.09006 * 109.48666 * 180.69150 * 18 17 16 37 37 H 1.08992 * 109.46811 * 53.71987 * 21 19 5 38 38 H 1.08992 * 109.47199 * 173.72451 * 21 19 5 39 39 H 1.08998 * 109.47050 * 293.72362 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8262 -0.0579 6 6 3.6677 3.4706 -1.3192 7 1 2.5808 3.5325 -1.3736 8 6 4.1842 2.6599 -2.4798 9 1 4.7471 1.7561 -2.2990 10 6 3.9374 3.0715 -3.7723 11 7 4.3879 2.3637 -4.7851 12 14 2.9633 4.6344 -4.0850 13 1 3.8924 5.7905 -4.1582 14 1 2.2259 4.5098 -5.3679 15 1 1.9971 4.8453 -2.9772 16 6 4.2627 4.8796 -1.3756 17 7 3.7881 5.6555 -0.2213 18 6 4.1801 5.0111 1.0399 19 6 3.5850 3.6022 1.0963 20 1 2.4972 3.6656 1.0694 21 6 4.0249 2.9137 2.3899 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9329 0.9670 0.9118 30 1 3.9336 0.8914 -0.8666 31 1 4.2145 2.6535 -5.6945 32 1 5.3506 4.8163 -1.3486 33 1 3.9494 5.3701 -2.2972 34 1 2.7891 5.7912 -0.2629 35 1 5.2670 4.9493 1.0943 36 1 3.8067 5.5978 1.8793 37 1 5.1023 2.7512 2.3667 38 1 3.7708 3.5445 3.2417 39 1 3.5147 1.9550 2.4828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249848280.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:28 Heat of formation + Delta-G solvation = -20.739126 kcal Electronic energy + Delta-G solvation = -17156.783408 eV Core-core repulsion = 14712.033548 eV Total energy + Delta-G solvation = -2444.749861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75296 -36.77850 -35.25446 -34.41420 -33.11500 -29.97767 -28.33959 -27.04489 -25.38274 -23.14306 -22.70697 -22.41189 -20.19482 -18.81720 -17.39474 -16.90936 -16.33968 -16.15682 -15.88510 -15.44521 -14.87945 -14.65004 -14.01104 -13.92331 -13.83999 -13.24817 -13.15213 -13.01827 -12.73955 -12.63290 -12.35452 -12.27215 -12.21660 -12.08686 -11.86373 -11.71971 -11.38855 -11.35564 -11.06188 -10.80803 -9.34688 -8.87914 -8.31072 -6.32549 1.26845 1.28960 1.37705 2.26168 3.00817 3.14352 3.42220 3.95298 3.98985 4.10826 4.22517 4.30870 4.35137 4.37696 4.41295 4.56078 4.65592 4.72365 4.73988 4.81460 4.91101 4.96597 5.00716 5.06960 5.13905 5.18450 5.25088 5.26641 5.38582 5.42630 5.45750 5.58103 5.98219 6.04575 6.36485 6.45821 6.70598 6.75360 7.30472 8.85132 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.012923 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.870494 B = 2166.240626 C = 3078.818294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.066 3.934 5 N -0.530 5.530 6 C 0.165 3.835 7 H -0.010 1.010 8 C -0.498 4.498 9 H 0.042 0.958 10 C 0.017 3.983 11 N -0.944 5.944 12 Si 0.941 3.059 13 H -0.265 1.265 14 H -0.297 1.297 15 H -0.255 1.255 16 C 0.061 3.939 17 N -0.692 5.692 18 C 0.068 3.932 19 C 0.035 3.965 20 H 0.032 0.968 21 C -0.132 4.132 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.266 0.734 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.336 0.664 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 1.584 14.091 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.180 4.180 4 C -0.062 4.062 5 N -0.254 5.254 6 C 0.055 3.945 7 H 0.007 0.993 8 C -0.537 4.537 9 H 0.060 0.940 10 C -0.181 4.181 11 N -0.584 5.584 12 Si 0.769 3.231 13 H -0.192 1.192 14 H -0.225 1.225 15 H -0.180 1.180 16 C -0.069 4.069 17 N -0.319 5.319 18 C -0.062 4.062 19 C -0.075 4.075 20 H 0.050 0.950 21 C -0.190 4.190 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.128 2.038 13.930 14.983 hybrid contribution -1.616 -0.378 -1.172 2.032 sum -6.745 1.661 12.758 14.526 Atomic orbital electron populations 1.21737 0.95006 1.02149 1.01484 1.21410 0.96585 0.95683 1.01784 1.22066 0.97510 0.97953 1.00487 1.22063 0.92714 0.90231 1.01212 1.62232 1.59333 1.02297 1.01535 1.20079 0.92672 0.93039 0.88681 0.99268 1.21101 1.33633 1.09146 0.89857 0.93974 1.25684 0.96558 0.99907 0.95903 1.70018 1.48052 1.41082 0.99295 0.85979 0.79551 0.80452 0.77130 1.19150 1.22453 1.17963 1.22335 1.00329 0.91953 0.92239 1.60838 1.18938 1.49444 1.02663 1.22219 1.01057 0.91252 0.91670 1.22526 0.96831 0.95896 0.92199 0.94982 1.21734 1.01782 1.00496 0.94959 0.91897 0.91450 0.94175 0.90541 0.93684 0.94826 0.91473 0.89992 0.93313 0.92536 0.91844 0.93236 0.84696 0.91167 0.87826 0.92404 0.90025 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.12 -3.34 5.93 30.59 0.18 -3.16 16 3 C -0.14 -4.77 4.50 30.60 0.14 -4.63 16 4 C 0.07 2.48 4.62 86.31 0.40 2.88 16 5 N -0.53 -21.18 4.54 -849.79 -3.86 -25.04 16 6 C 0.17 7.68 1.14 44.17 0.05 7.73 16 7 H -0.01 -0.48 5.57 -2.39 -0.01 -0.50 16 8 C -0.50 -28.27 8.46 25.60 0.22 -28.05 16 9 H 0.04 2.68 6.71 -2.91 -0.02 2.66 16 10 C 0.02 1.00 5.45 84.65 0.46 1.46 16 11 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 12 Si 0.94 45.25 24.36 68.60 1.67 46.92 16 13 H -0.27 -12.30 6.88 99.48 0.68 -11.61 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 15 H -0.26 -11.48 6.53 99.48 0.65 -10.83 16 16 C 0.06 2.67 5.47 86.31 0.47 3.14 16 17 N -0.69 -24.23 6.91 -513.44 -3.55 -27.78 16 18 C 0.07 2.00 6.00 86.31 0.52 2.52 16 19 C 0.04 1.09 2.06 44.92 0.09 1.18 16 20 H 0.03 1.01 6.54 -2.39 -0.02 0.99 16 21 C -0.13 -3.15 8.65 71.98 0.62 -2.53 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.03 1.36 6.45 -2.39 -0.02 1.35 16 28 H 0.07 2.01 6.61 -2.39 -0.02 2.00 16 29 H 0.08 2.65 6.40 -2.39 -0.02 2.63 16 30 H 0.05 2.22 6.15 -2.39 -0.01 2.21 16 31 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 32 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.05 2.26 3.33 -2.39 -0.01 2.25 16 34 H 0.34 10.97 8.89 -89.69 -0.80 10.18 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.32 6.73 -2.39 -0.02 1.30 16 Total: -1.00 -64.10 285.59 -1.43 -65.52 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.15 Total: 21.32 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 3.86 Total: -22.32 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -7.11 Total: -111.43 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -64.10 -1.43 -65.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249848280.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.783 kcal (2) G-P(sol) polarization free energy of solvation -64.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds