Wall clock time and date at job start Mon Mar 30 2020 03:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47386 * 2 1 4 4 C 1.53003 * 109.47386 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47297 * 180.02562 * 4 3 2 6 6 C 1.46952 * 111.00388 * 66.04592 * 5 4 3 7 7 C 1.53055 * 109.37021 * 183.18652 * 6 5 4 8 8 N 1.46957 * 109.36236 * 301.60151 * 7 6 5 9 9 C 1.46904 * 110.99519 * 183.18393 * 8 7 6 10 10 C 1.46957 * 110.88061 * 59.31825 * 8 7 6 11 11 H 1.08999 * 109.48894 * 60.66755 * 10 8 7 12 12 C 1.50699 * 109.48678 * 180.71309 * 10 8 7 13 13 H 1.07997 * 120.00049 * 33.36828 * 12 10 8 14 14 C 1.37885 * 120.00050 * 213.37608 * 12 10 8 15 15 N 1.31514 * 119.99351 * 6.91385 * 14 12 10 16 16 Si 1.86794 * 119.99949 * 186.91957 * 14 12 10 17 17 H 1.48498 * 109.47367 * 59.99813 * 16 14 12 18 18 H 1.48506 * 109.47027 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47292 * 299.99451 * 16 14 12 20 20 C 1.46957 * 110.99933 * 189.86950 * 5 4 3 21 21 H 1.08993 * 109.47301 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46854 * 300.00352 * 1 2 3 23 23 H 1.09006 * 109.46601 * 59.99731 * 1 2 3 24 24 H 1.08997 * 109.46854 * 239.99648 * 2 1 3 25 25 H 1.08996 * 109.46764 * 120.00250 * 2 1 3 26 26 H 1.08997 * 109.47412 * 59.99990 * 3 2 1 27 27 H 1.09006 * 109.47470 * 299.99737 * 3 2 1 28 28 H 1.08997 * 109.46854 * 59.99648 * 4 3 2 29 29 H 1.08996 * 109.46764 * 300.00250 * 4 3 2 30 30 H 1.09002 * 109.48974 * 63.21826 * 6 5 4 31 31 H 1.09003 * 109.49219 * 303.15739 * 6 5 4 32 32 H 1.08998 * 109.48790 * 181.62787 * 7 6 5 33 33 H 1.09009 * 109.50081 * 61.57747 * 7 6 5 34 34 H 1.08994 * 109.46967 * 290.02995 * 9 8 7 35 35 H 1.08996 * 109.47133 * 50.03854 * 9 8 7 36 36 H 1.09000 * 109.46219 * 170.03331 * 9 8 7 37 37 H 0.97007 * 119.99070 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.50730 * 56.85012 * 20 5 4 39 39 H 1.09000 * 109.47368 * 296.78510 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8273 0.0013 6 6 3.7097 3.5092 1.2550 7 6 4.1663 4.9683 1.1839 8 7 5.6164 5.0142 0.9499 9 6 6.1061 6.3992 0.9505 10 6 5.9665 4.3324 -0.3039 11 1 5.4708 4.8285 -1.1383 12 6 7.4593 4.3828 -0.5038 13 1 8.1198 4.3506 0.3500 14 6 7.9819 4.4703 -1.7768 15 7 7.1815 4.6465 -2.8053 16 14 9.8265 4.3383 -2.0402 17 1 10.3042 3.0220 -1.5459 18 1 10.1297 4.4623 -3.4887 19 1 10.5119 5.4251 -1.2957 20 6 5.5098 2.8733 -0.2333 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8899 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 3.9338 0.9284 -0.8891 29 1 3.9330 0.9287 0.8908 30 1 4.2056 3.0133 2.0895 31 1 2.6300 3.4727 1.3997 32 1 3.9335 5.4684 2.1240 33 1 3.6499 5.4718 0.3666 34 1 5.7449 6.9126 0.0595 35 1 5.7407 6.9134 1.8394 36 1 7.1961 6.3991 0.9531 37 1 7.5492 4.7076 -3.7009 38 1 5.7424 2.3734 -1.1736 39 1 6.0262 2.3698 0.5840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249893415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:13 Heat of formation + Delta-G solvation = -24.737437 kcal Electronic energy + Delta-G solvation = -16432.307922 eV Core-core repulsion = 13987.384682 eV Total energy + Delta-G solvation = -2444.923240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15603 -37.27616 -35.04835 -34.71138 -31.65876 -30.55810 -28.18541 -26.84635 -24.64716 -24.04707 -22.75448 -21.62279 -20.46090 -18.51428 -17.03865 -16.61497 -16.39128 -15.78651 -15.55880 -15.29855 -15.14815 -14.88248 -14.17673 -14.04903 -13.63082 -13.31643 -13.09097 -12.86988 -12.76712 -12.60858 -12.42199 -12.12537 -12.06110 -11.92449 -11.85995 -11.70165 -11.42730 -11.33381 -10.87565 -10.60742 -9.18507 -8.93350 -8.15465 -6.27886 1.41083 1.42954 1.51180 2.40191 2.97845 3.20908 3.46258 3.95572 4.10130 4.16489 4.29966 4.37033 4.45046 4.47746 4.61296 4.68101 4.69698 4.73707 4.81260 4.86074 4.92876 4.98134 5.03575 5.07318 5.13158 5.18597 5.29578 5.37548 5.43071 5.50963 5.58547 5.69018 6.01421 6.23880 6.28214 6.43809 6.76756 6.94646 7.42093 8.91484 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.006906 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.629657 B = 4053.295366 C = 4688.259226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.106 4.106 4 C 0.056 3.944 5 N -0.558 5.558 6 C 0.065 3.935 7 C 0.053 3.947 8 N -0.554 5.554 9 C 0.054 3.946 10 C 0.213 3.787 11 H -0.006 1.006 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.017 3.983 15 N -0.924 5.924 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.093 3.907 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.015 0.985 34 H -0.004 1.004 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.263 0.737 38 H 0.041 0.959 39 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -5.401 7.039 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.072 4.072 5 N -0.283 5.283 6 C -0.062 4.062 7 C -0.075 4.075 8 N -0.280 5.280 9 C -0.094 4.094 10 C 0.106 3.894 11 H 0.012 0.988 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.182 4.182 15 N -0.563 5.563 16 Si 0.784 3.216 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.036 4.036 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.014 0.986 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -9.900 -5.381 6.844 13.183 hybrid contribution 1.170 0.071 -0.693 1.362 sum -8.730 -5.310 6.150 11.926 Atomic orbital electron populations 1.21737 0.94692 1.02123 1.01972 1.21473 0.96754 0.95536 1.02085 1.21556 0.92859 0.97665 1.02268 1.22149 0.96768 0.88285 0.99979 1.62229 1.14436 1.16489 1.35142 1.22148 1.00719 0.93631 0.89744 1.22222 0.88432 0.96628 1.00236 1.62317 1.12430 1.15844 1.37375 1.21980 1.00644 0.88296 0.98484 1.19204 0.94511 0.90007 0.85689 0.98776 1.21192 0.91891 1.50712 0.92145 0.92790 1.25790 1.02515 0.94091 0.95833 1.70099 1.36829 1.49929 0.99407 0.85602 0.79998 0.79084 0.76931 1.19440 1.20937 1.19355 1.22015 0.85447 0.98697 0.97437 0.91804 0.92333 0.92935 0.92282 0.91658 0.91339 0.92391 0.92318 0.95072 0.94991 0.88397 0.88799 0.96693 0.98580 0.90464 0.92630 0.92794 0.94057 0.96781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.79 16 2 C -0.12 -2.46 5.93 30.59 0.18 -2.28 16 3 C -0.11 -2.69 5.15 30.59 0.16 -2.53 16 4 C 0.06 1.81 4.96 86.31 0.43 2.24 16 5 N -0.56 -22.30 4.71 -895.73 -4.22 -26.52 16 6 C 0.07 2.26 5.41 86.31 0.47 2.72 16 7 C 0.05 1.99 5.61 86.31 0.48 2.48 16 8 N -0.55 -25.12 4.78 -900.95 -4.30 -29.42 16 9 C 0.05 2.30 9.19 127.69 1.17 3.47 16 10 C 0.21 11.29 2.08 44.18 0.09 11.38 16 11 H -0.01 -0.35 7.27 -2.39 -0.02 -0.37 16 12 C -0.52 -29.29 7.07 25.60 0.18 -29.11 16 13 H 0.05 3.04 7.80 -2.91 -0.02 3.02 16 14 C 0.02 0.98 5.45 84.66 0.46 1.44 16 15 N -0.92 -55.26 12.79 21.45 0.27 -54.98 16 16 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.09 4.47 4.87 86.31 0.42 4.90 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.62 6.49 -2.39 -0.02 1.60 16 27 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 29 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 2.76 6.33 -2.39 -0.02 2.74 16 32 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 33 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.00 -0.20 8.12 -2.39 -0.02 -0.22 16 35 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 36 H 0.05 2.49 7.23 -2.39 -0.02 2.47 16 37 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 38 H 0.04 2.17 8.07 -2.39 -0.02 2.15 16 39 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -63.06 303.91 -0.49 -63.55 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.97 Total: 8.35 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.76 Total: -7.10 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -8.25 Total: -110.92 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.06 -0.49 -63.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249893415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.813 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds