Wall clock time and date at job start Mon Mar 30 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 C 1.53001 * 109.47156 * 120.00019 * 2 1 3 5 5 N 1.46901 * 109.46926 * 64.99767 * 4 2 1 6 6 C 1.46965 * 110.99695 * 66.04638 * 5 4 2 7 7 C 1.53058 * 109.35957 * 183.18480 * 6 5 4 8 8 N 1.46951 * 109.36676 * 301.59731 * 7 6 5 9 9 C 1.46901 * 110.99863 * 183.18810 * 8 7 6 10 10 C 1.46955 * 110.87977 * 59.32367 * 8 7 6 11 11 H 1.09001 * 109.48851 * 60.64263 * 10 8 7 12 12 C 1.50702 * 109.49131 * 180.70864 * 10 8 7 13 13 H 1.08004 * 119.99775 * 35.01798 * 12 10 8 14 14 C 1.37873 * 120.00048 * 215.01312 * 12 10 8 15 15 N 1.31513 * 119.99729 * 184.86647 * 14 12 10 16 16 Si 1.86798 * 120.00308 * 4.87109 * 14 12 10 17 17 H 1.48504 * 109.46924 * 84.74566 * 16 14 12 18 18 H 1.48496 * 109.47237 * 204.74513 * 16 14 12 19 19 H 1.48494 * 109.46873 * 324.75019 * 16 14 12 20 20 C 1.46954 * 111.00232 * 189.84284 * 5 4 2 21 21 H 1.09003 * 109.47536 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47360 * 299.99778 * 1 2 3 23 23 H 1.09004 * 109.47551 * 59.99871 * 1 2 3 24 24 H 1.08999 * 109.46514 * 239.99906 * 2 1 3 25 25 H 1.09006 * 109.46641 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47287 * 300.00196 * 3 2 1 27 27 H 1.08995 * 109.47133 * 60.00593 * 3 2 1 28 28 H 1.08998 * 109.47092 * 305.00378 * 4 2 1 29 29 H 1.08996 * 109.47247 * 184.99720 * 4 2 1 30 30 H 1.09001 * 109.48928 * 63.22232 * 6 5 4 31 31 H 1.08998 * 109.48692 * 303.15132 * 6 5 4 32 32 H 1.08997 * 109.49004 * 61.57325 * 7 6 5 33 33 H 1.09008 * 109.48467 * 181.60588 * 7 6 5 34 34 H 1.08997 * 109.46907 * 58.64601 * 9 8 7 35 35 H 1.09002 * 109.46944 * 178.63838 * 9 8 7 36 36 H 1.09000 * 109.47415 * 298.63934 * 9 8 7 37 37 H 0.96997 * 120.00293 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.48424 * 56.84782 * 20 5 4 39 39 H 1.09002 * 109.48906 * 296.78349 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 -2.1367 1.1904 6 6 2.3343 -2.8249 0.0860 7 6 1.8437 -4.2727 0.0095 8 7 2.1083 -4.9451 1.2891 9 6 1.7196 -6.3605 1.2302 10 6 1.4254 -4.2569 2.3935 11 1 0.3495 -4.2675 2.2187 12 6 1.7315 -4.9607 3.6904 13 1 2.7031 -5.4054 3.8472 14 6 0.7711 -5.0368 4.6768 15 7 1.0677 -5.5658 5.8437 16 14 -0.9511 -4.3886 4.3557 17 1 -1.7570 -5.4377 3.6809 18 1 -1.5917 -4.0253 5.6451 19 1 -0.8737 -3.1878 3.4856 20 6 1.9159 -2.8092 2.4700 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8932 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 3.4102 -2.8142 0.2608 31 1 2.1129 -2.3158 -0.8521 32 1 0.7727 -4.2835 -0.1924 33 1 2.3699 -4.7931 -0.7909 34 1 2.2720 -6.8560 0.4318 35 1 1.9485 -6.8400 2.1820 36 1 0.6502 -6.4358 1.0333 37 1 0.3920 -5.6197 6.5376 38 1 1.3895 -2.2886 3.2699 39 1 2.9870 -2.7983 2.6718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250542974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:16 Heat of formation + Delta-G solvation = 0.579988 kcal Electronic energy + Delta-G solvation = -16849.994428 eV Core-core repulsion = 14406.169034 eV Total energy + Delta-G solvation = -2443.825394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.81417 -36.29597 -33.42351 -32.68812 -30.30094 -28.11000 -26.99061 -25.36023 -24.51358 -22.42585 -21.61641 -19.51070 -18.78473 -16.93986 -15.73006 -14.99448 -14.55203 -14.49345 -13.99061 -13.78140 -13.60773 -13.16325 -13.00193 -12.47992 -12.30833 -12.07233 -11.70027 -11.54036 -11.34526 -11.04865 -10.85096 -10.76785 -10.62252 -10.62082 -10.39279 -10.00558 -9.96454 -9.70158 -9.11545 -8.58895 -7.73792 -7.26367 -6.11800 -4.11999 3.27754 3.36481 3.43473 4.38930 4.42639 4.87421 4.96388 5.09764 5.25886 5.31471 5.57097 5.64521 5.70078 5.76863 5.84169 5.85750 5.97257 5.99366 6.12721 6.17142 6.20923 6.23063 6.30600 6.41737 6.45978 6.48945 6.56116 6.59814 6.76475 6.99523 7.17498 7.44517 7.66105 7.76786 8.02084 8.14858 8.65369 8.99048 9.52143 11.00517 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.009197 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.870847 B = 3043.705617 C = 3565.851235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.059 3.941 5 N -0.545 5.545 6 C 0.061 3.939 7 C 0.054 3.946 8 N -0.538 5.538 9 C 0.041 3.959 10 C 0.190 3.810 11 H 0.011 0.989 12 C -0.505 4.505 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.894 5.894 16 Si 0.869 3.131 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.259 1.259 20 C 0.069 3.931 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.009 0.991 37 H 0.265 0.735 38 H 0.066 0.934 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 8.924 -11.665 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.069 4.069 5 N -0.270 5.270 6 C -0.067 4.067 7 C -0.075 4.075 8 N -0.263 5.263 9 C -0.107 4.107 10 C 0.083 3.917 11 H 0.028 0.972 12 C -0.544 4.544 13 H 0.099 0.901 14 C -0.128 4.128 15 N -0.532 5.532 16 Si 0.696 3.304 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.183 1.183 20 C -0.058 4.058 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.085 8.877 -11.461 14.497 hybrid contribution -0.970 0.321 -0.004 1.022 sum -1.054 9.198 -11.465 14.737 Atomic orbital electron populations 1.21703 0.94793 1.02600 1.00307 1.21148 0.96661 0.95137 0.98368 1.21817 1.00653 0.96343 1.01511 1.22131 0.97393 0.89443 0.97929 1.62302 1.57778 1.01254 1.05653 1.22093 0.96227 0.94031 0.94367 1.22097 0.98274 0.93794 0.93297 1.62232 1.59191 1.02302 1.02565 1.22131 0.96577 0.89645 1.02333 1.19722 0.91885 0.89783 0.90340 0.97178 1.20868 1.01514 1.35356 0.96649 0.90141 1.25006 0.98397 0.94493 0.94872 1.69893 1.34396 1.44866 1.04015 0.86968 0.85225 0.80553 0.77670 1.20347 1.21499 1.18288 1.22544 0.99123 0.95810 0.88355 0.91442 0.93270 0.93911 0.91371 0.93016 0.92888 0.92777 0.91224 0.95394 0.94746 0.91420 0.95383 0.91791 0.93771 0.89693 0.97285 0.92539 0.91515 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.08 37.16 0.34 -1.44 16 2 C -0.09 -1.20 2.84 -90.62 -0.26 -1.46 16 3 C -0.15 -1.54 9.19 37.16 0.34 -1.20 16 4 C 0.06 0.92 4.35 -3.82 -0.02 0.90 16 5 N -0.55 -10.07 4.17 -234.46 -0.98 -11.05 16 6 C 0.06 1.03 5.41 -3.76 -0.02 1.01 16 7 C 0.05 0.98 5.62 -3.77 -0.02 0.96 16 8 N -0.54 -11.66 4.78 -236.12 -1.13 -12.79 16 9 C 0.04 0.84 9.32 60.07 0.56 1.40 16 10 C 0.19 4.58 1.61 -68.81 -0.11 4.47 16 11 H 0.01 0.27 5.30 -51.93 -0.28 -0.01 16 12 C -0.51 -13.99 7.46 -34.44 -0.26 -14.25 16 13 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 16 Si 0.87 21.56 26.99 -169.99 -4.59 16.98 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.26 -6.29 6.82 56.52 0.39 -5.91 16 20 C 0.07 1.53 4.87 -3.77 -0.02 1.51 16 21 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.86 6.28 -51.93 -0.33 0.54 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 29 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.98 6.24 -51.93 -0.32 0.66 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.91 6.91 -51.93 -0.36 1.56 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.52 8.07 -51.93 -0.42 1.10 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -29.18 298.77 -8.14 -37.32 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.17 Total: -2.84 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 0.44 Total: -6.06 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -1.33 Total: -49.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.59 Total: 16.98 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.18 -8.14 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250542974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds