Wall clock time and date at job start Mon Mar 30 2020 03:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 C 1.53001 * 109.47156 * 120.00019 * 2 1 3 5 5 N 1.46901 * 109.46926 * 64.99767 * 4 2 1 6 6 C 1.46965 * 110.99695 * 66.04638 * 5 4 2 7 7 C 1.53058 * 109.35957 * 183.18480 * 6 5 4 8 8 N 1.46951 * 109.36676 * 301.59731 * 7 6 5 9 9 C 1.46901 * 110.99863 * 183.18810 * 8 7 6 10 10 C 1.46955 * 110.87977 * 59.32367 * 8 7 6 11 11 H 1.09001 * 109.48851 * 60.64263 * 10 8 7 12 12 C 1.50702 * 109.49131 * 180.70864 * 10 8 7 13 13 H 1.08004 * 119.99775 * 35.01798 * 12 10 8 14 14 C 1.37873 * 120.00048 * 215.01312 * 12 10 8 15 15 N 1.31513 * 119.99729 * 184.86647 * 14 12 10 16 16 Si 1.86798 * 120.00308 * 4.87109 * 14 12 10 17 17 H 1.48504 * 109.46924 * 84.74566 * 16 14 12 18 18 H 1.48496 * 109.47237 * 204.74513 * 16 14 12 19 19 H 1.48494 * 109.46873 * 324.75019 * 16 14 12 20 20 C 1.46954 * 111.00232 * 189.84284 * 5 4 2 21 21 H 1.09003 * 109.47536 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47360 * 299.99778 * 1 2 3 23 23 H 1.09004 * 109.47551 * 59.99871 * 1 2 3 24 24 H 1.08999 * 109.46514 * 239.99906 * 2 1 3 25 25 H 1.09006 * 109.46641 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47287 * 300.00196 * 3 2 1 27 27 H 1.08995 * 109.47133 * 60.00593 * 3 2 1 28 28 H 1.08998 * 109.47092 * 305.00378 * 4 2 1 29 29 H 1.08996 * 109.47247 * 184.99720 * 4 2 1 30 30 H 1.09001 * 109.48928 * 63.22232 * 6 5 4 31 31 H 1.08998 * 109.48692 * 303.15132 * 6 5 4 32 32 H 1.08997 * 109.49004 * 61.57325 * 7 6 5 33 33 H 1.09008 * 109.48467 * 181.60588 * 7 6 5 34 34 H 1.08997 * 109.46907 * 58.64601 * 9 8 7 35 35 H 1.09002 * 109.46944 * 178.63838 * 9 8 7 36 36 H 1.09000 * 109.47415 * 298.63934 * 9 8 7 37 37 H 0.96997 * 120.00293 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.48424 * 56.84782 * 20 5 4 39 39 H 1.09002 * 109.48906 * 296.78349 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 -2.1367 1.1904 6 6 2.3343 -2.8249 0.0860 7 6 1.8437 -4.2727 0.0095 8 7 2.1083 -4.9451 1.2891 9 6 1.7196 -6.3605 1.2302 10 6 1.4254 -4.2569 2.3935 11 1 0.3495 -4.2675 2.2187 12 6 1.7315 -4.9607 3.6904 13 1 2.7031 -5.4054 3.8472 14 6 0.7711 -5.0368 4.6768 15 7 1.0677 -5.5658 5.8437 16 14 -0.9511 -4.3886 4.3557 17 1 -1.7570 -5.4377 3.6809 18 1 -1.5917 -4.0253 5.6451 19 1 -0.8737 -3.1878 3.4856 20 6 1.9159 -2.8092 2.4700 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8932 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 3.4102 -2.8142 0.2608 31 1 2.1129 -2.3158 -0.8521 32 1 0.7727 -4.2835 -0.1924 33 1 2.3699 -4.7931 -0.7909 34 1 2.2720 -6.8560 0.4318 35 1 1.9485 -6.8400 2.1820 36 1 0.6502 -6.4358 1.0333 37 1 0.3920 -5.6197 6.5376 38 1 1.3895 -2.2886 3.2699 39 1 2.9870 -2.7983 2.6718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250542974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:15 Heat of formation + Delta-G solvation = -19.832622 kcal Electronic energy + Delta-G solvation = -16850.879585 eV Core-core repulsion = 14406.169034 eV Total energy + Delta-G solvation = -2444.710552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34926 -37.65287 -34.90461 -34.62589 -32.09960 -29.61075 -27.91124 -27.22395 -25.96472 -24.04546 -23.20085 -20.71545 -20.44812 -19.05064 -17.26373 -16.30797 -16.23895 -15.92591 -15.74424 -15.35123 -14.89353 -14.80986 -14.49817 -14.23687 -13.46846 -13.35783 -13.02347 -13.00677 -12.83756 -12.68104 -12.56411 -12.25272 -11.96684 -11.88809 -11.80048 -11.69977 -11.59791 -11.38691 -10.95760 -10.75196 -9.22706 -8.97885 -8.32912 -6.36714 1.28972 1.32589 1.44787 2.29979 2.88716 3.13305 3.34414 3.87963 4.08092 4.14172 4.29707 4.31828 4.43920 4.52619 4.54029 4.61934 4.73294 4.74605 4.78395 4.85859 4.88501 4.89178 5.02245 5.08093 5.11794 5.16010 5.20768 5.29306 5.33588 5.47400 5.54874 5.56384 6.04708 6.16085 6.19785 6.43446 6.67223 6.75487 7.30815 8.83432 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.009197 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.870847 B = 3043.705617 C = 3565.851235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.058 3.942 5 N -0.549 5.549 6 C 0.062 3.938 7 C 0.053 3.947 8 N -0.554 5.554 9 C 0.045 3.955 10 C 0.195 3.805 11 H 0.000 1.000 12 C -0.502 4.502 13 H 0.036 0.964 14 C 0.024 3.976 15 N -0.940 5.940 16 Si 0.932 3.068 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.250 1.250 20 C 0.080 3.920 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.010 0.990 37 H 0.267 0.733 38 H 0.052 0.948 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 10.567 -14.345 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C -0.199 4.199 4 C -0.070 4.070 5 N -0.274 5.274 6 C -0.065 4.065 7 C -0.075 4.075 8 N -0.279 5.279 9 C -0.103 4.103 10 C 0.087 3.913 11 H 0.018 0.982 12 C -0.541 4.541 13 H 0.055 0.945 14 C -0.175 4.175 15 N -0.580 5.580 16 Si 0.757 3.243 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.174 1.174 20 C -0.048 4.048 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.789 10.531 -14.171 17.673 hybrid contribution -0.645 -0.219 0.781 1.036 sum -1.433 10.312 -13.390 16.961 Atomic orbital electron populations 1.21677 0.94904 1.01426 1.01174 1.21122 0.96458 0.96241 0.96827 1.21777 1.00985 0.94751 1.02358 1.22242 0.97634 0.87701 0.99418 1.62263 1.58336 1.02663 1.04117 1.22191 0.95740 0.93561 0.95042 1.22254 0.98725 0.94565 0.91954 1.62153 1.59046 1.02932 1.03746 1.22086 0.97186 0.89186 1.01822 1.19522 0.91437 0.90777 0.89527 0.98248 1.20975 0.99598 1.34936 0.98614 0.94524 1.25740 1.02325 0.94933 0.94495 1.70023 1.35856 1.46925 1.05154 0.85956 0.80351 0.80233 0.77789 1.19714 1.20919 1.17393 1.22172 0.97598 0.94872 0.90203 0.93567 0.93715 0.91806 0.90618 0.92506 0.91184 0.92833 0.91972 0.95147 0.95152 0.88038 0.95523 0.88733 0.90237 0.93041 0.97158 0.92355 0.92940 0.96406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.08 71.98 0.65 -2.45 16 2 C -0.09 -1.96 2.84 -10.79 -0.03 -1.99 16 3 C -0.14 -2.49 9.19 71.98 0.66 -1.83 16 4 C 0.06 1.67 4.35 86.30 0.38 2.05 16 5 N -0.55 -19.36 4.17 -895.69 -3.73 -23.09 16 6 C 0.06 1.93 5.41 86.31 0.47 2.40 16 7 C 0.05 1.78 5.62 86.31 0.49 2.26 16 8 N -0.55 -23.56 4.78 -900.96 -4.30 -27.86 16 9 C 0.05 1.82 9.32 127.69 1.19 3.01 16 10 C 0.20 9.46 1.61 44.18 0.07 9.53 16 11 H 0.00 0.00 5.30 -2.39 -0.01 -0.02 16 12 C -0.50 -28.85 7.46 25.60 0.19 -28.66 16 13 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 14 C 0.02 1.38 5.47 84.65 0.46 1.85 16 15 N -0.94 -58.35 13.96 21.45 0.30 -58.06 16 16 Si 0.93 45.12 26.99 68.60 1.85 46.97 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.25 -11.67 6.82 99.48 0.68 -10.99 16 20 C 0.08 3.53 4.87 86.31 0.42 3.95 16 21 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.08 1.59 6.28 -2.39 -0.01 1.58 16 25 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 29 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 2.49 6.24 -2.39 -0.01 2.48 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.05 2.38 6.91 -2.39 -0.02 2.36 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.05 2.42 8.07 -2.39 -0.02 2.40 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -64.55 298.77 0.01 -64.53 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.95 Total: 7.38 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.95 Total: -9.89 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -7.73 Total: -109.00 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.85 Total: 46.97 kcal Total: -64.55 0.01 -64.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250542974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.700 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds