Wall clock time and date at job start Mon Mar 30 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47470 * 2 1 4 4 C 1.53003 * 109.46985 * 120.00315 * 2 1 3 5 5 N 1.46903 * 109.47480 * 51.39553 * 4 2 1 6 6 C 1.46953 * 111.01851 * 238.15261 * 5 4 2 7 7 C 1.53053 * 109.38079 * 176.83288 * 6 5 4 8 8 N 1.46952 * 109.36726 * 58.38761 * 7 6 5 9 9 C 1.46894 * 111.00394 * 176.81085 * 8 7 6 10 10 C 1.46958 * 110.87936 * 300.68400 * 8 7 6 11 11 C 1.46958 * 110.99760 * 114.33732 * 5 4 2 12 12 H 1.08993 * 109.49056 * 63.20323 * 11 5 4 13 13 C 1.50698 * 109.48654 * 303.15454 * 11 5 4 14 14 H 1.07997 * 120.00414 * 323.76925 * 13 11 5 15 15 C 1.37885 * 119.99582 * 143.77163 * 13 11 5 16 16 N 1.31512 * 119.99851 * 187.08476 * 15 13 11 17 17 Si 1.86801 * 119.99906 * 6.80225 * 15 13 11 18 18 H 1.48497 * 109.47019 * 180.27971 * 17 15 13 19 19 H 1.48502 * 109.47084 * 300.27778 * 17 15 13 20 20 H 1.48501 * 109.46985 * 60.28081 * 17 15 13 21 21 H 1.08995 * 109.46671 * 68.11489 * 1 2 3 22 22 H 1.08997 * 109.47490 * 188.11897 * 1 2 3 23 23 H 1.09003 * 109.47004 * 308.12043 * 1 2 3 24 24 H 1.08999 * 109.46811 * 239.99808 * 2 1 3 25 25 H 1.09002 * 109.46922 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47004 * 300.00141 * 3 2 1 27 27 H 1.08998 * 109.46849 * 59.99739 * 3 2 1 28 28 H 1.09000 * 109.47077 * 291.39815 * 4 2 1 29 29 H 1.09001 * 109.47075 * 171.39576 * 4 2 1 30 30 H 1.09000 * 109.48949 * 56.84919 * 6 5 4 31 31 H 1.09001 * 109.48761 * 296.80874 * 6 5 4 32 32 H 1.08998 * 109.48454 * 298.41837 * 7 6 5 33 33 H 1.09002 * 109.50379 * 178.36778 * 7 6 5 34 34 H 1.08998 * 109.47557 * 183.79467 * 9 8 7 35 35 H 1.09001 * 109.47175 * 303.80240 * 9 8 7 36 36 H 1.09008 * 109.46966 * 63.79570 * 9 8 7 37 37 H 1.09010 * 109.48512 * 299.34909 * 10 8 7 38 38 H 1.09002 * 109.49188 * 179.29159 * 10 8 7 39 39 H 0.96996 * 120.00164 * 355.95894 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.3885 -2.0336 1.3573 6 6 0.6656 -2.1598 2.6305 7 6 -0.0622 -3.5056 2.6700 8 7 0.9141 -4.5925 2.5120 9 6 0.2631 -5.9049 2.6202 10 6 1.6367 -4.4664 1.2385 11 6 2.3646 -3.1207 1.1990 12 1 3.0922 -3.0770 2.0093 13 6 3.0737 -2.9712 -0.1223 14 1 2.5353 -2.6109 -0.9864 15 6 4.4099 -3.2946 -0.2280 16 7 5.0635 -3.0343 -1.3391 17 14 5.2937 -4.0950 1.2100 18 1 6.7138 -4.3337 0.8473 19 1 5.2287 -3.1985 2.3921 20 1 4.6412 -5.3892 1.5336 21 1 -0.3632 0.3831 -0.9536 22 1 -0.3634 -1.0173 0.1451 23 1 -0.3633 0.6344 0.8085 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.8076 -0.1265 2.1326 29 1 3.1191 -0.8564 1.1757 30 1 -0.0599 -1.3512 2.7185 31 1 1.3735 -2.1049 3.4576 32 1 -0.7897 -3.5495 1.8595 33 1 -0.5755 -3.6139 3.6255 34 1 1.0172 -6.6901 2.5670 35 1 -0.2643 -5.9715 3.5718 36 1 -0.4468 -6.0269 1.8021 37 1 0.9284 -4.5213 0.4116 38 1 2.3622 -5.2751 1.1504 39 1 4.5927 -2.6691 -2.1045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250605221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:00 Heat of formation + Delta-G solvation = -1.795661 kcal Electronic energy + Delta-G solvation = -17129.617117 eV Core-core repulsion = 14685.688707 eV Total energy + Delta-G solvation = -2443.928410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.71112 -35.96650 -33.53834 -32.60755 -30.21509 -28.05929 -26.55347 -25.04767 -24.50136 -22.44968 -21.15036 -19.20623 -18.72680 -17.63160 -15.34669 -14.92254 -14.48434 -14.13957 -14.05085 -13.76977 -13.49212 -13.41660 -12.77213 -12.06279 -11.94332 -11.78307 -11.64498 -11.56571 -11.49128 -10.97642 -10.85253 -10.55521 -10.46734 -10.25823 -10.05566 -9.91729 -9.73095 -9.62508 -8.79146 -8.38542 -7.80241 -7.22211 -6.45166 -4.10273 3.40697 3.43729 3.61689 4.47180 4.52808 4.78815 5.30457 5.48958 5.57522 5.61138 5.65977 5.74032 5.82366 5.87451 5.89470 6.06675 6.12304 6.13195 6.17172 6.30728 6.34076 6.37332 6.43669 6.48252 6.52728 6.69011 6.75388 6.92319 7.05318 7.07677 7.22026 7.51564 7.62153 7.86484 8.11383 8.36243 8.46549 9.00007 9.60831 10.94946 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.015080 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.797278 B = 1856.284012 C = 3132.883735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.144 4.144 4 C 0.078 3.922 5 N -0.530 5.530 6 C 0.055 3.945 7 C 0.063 3.937 8 N -0.554 5.554 9 C 0.027 3.973 10 C 0.063 3.937 11 C 0.189 3.811 12 H 0.010 0.990 13 C -0.574 4.574 14 H 0.065 0.935 15 C 0.030 3.970 16 N -0.908 5.908 17 Si 1.048 2.952 18 H -0.286 1.286 19 H -0.285 1.285 20 H -0.280 1.280 21 H 0.035 0.965 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.019 0.981 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 1.811 6.842 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.202 4.202 4 C -0.050 4.050 5 N -0.255 5.255 6 C -0.074 4.074 7 C -0.065 4.065 8 N -0.279 5.279 9 C -0.121 4.121 10 C -0.064 4.064 11 C 0.082 3.918 12 H 0.028 0.972 13 C -0.614 4.614 14 H 0.083 0.917 15 C -0.176 4.176 16 N -0.542 5.542 17 Si 0.877 3.123 18 H -0.212 1.212 19 H -0.212 1.212 20 H -0.206 1.206 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.983 1.250 7.349 10.214 hybrid contribution -1.588 0.457 -0.535 1.737 sum -8.570 1.707 6.814 11.082 Atomic orbital electron populations 1.21694 0.96164 1.02156 0.99070 1.21036 0.95196 0.94042 1.00004 1.21819 1.00968 0.96972 1.00401 1.21826 0.98854 0.88997 0.95346 1.62221 1.29978 1.03180 1.30097 1.22170 0.97245 0.95768 0.92191 1.22046 0.93536 0.91387 0.99551 1.62337 1.26990 1.01673 1.36917 1.22292 0.98011 0.92051 0.99788 1.22679 0.96422 1.00366 0.86947 1.19802 0.88755 0.86064 0.97177 0.97211 1.21949 0.96481 1.47827 0.95108 0.91693 1.25781 0.94678 0.95043 1.02058 1.70842 1.38180 1.41363 1.03847 0.83846 0.76299 0.77152 0.74980 1.21219 1.21164 1.20625 0.94612 0.91188 0.94575 0.90476 0.92960 0.93456 0.93696 0.94997 0.91758 0.91764 0.95358 0.94794 0.91746 0.91832 0.92357 0.96254 0.94982 0.91457 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.10 37.16 0.34 -1.88 16 2 C -0.08 -1.55 3.21 -90.62 -0.29 -1.84 16 3 C -0.14 -2.28 9.18 37.16 0.34 -1.94 16 4 C 0.08 1.57 4.35 -3.82 -0.02 1.55 16 5 N -0.53 -11.10 3.10 -227.88 -0.71 -11.81 16 6 C 0.06 0.99 5.28 -3.77 -0.02 0.97 16 7 C 0.06 1.07 5.62 -3.77 -0.02 1.05 16 8 N -0.55 -10.48 4.97 -242.75 -1.21 -11.68 16 9 C 0.03 0.42 9.60 60.06 0.58 1.00 16 10 C 0.06 1.40 4.82 -3.77 -0.02 1.38 16 11 C 0.19 4.50 1.36 -68.81 -0.09 4.40 16 12 H 0.01 0.26 5.66 -51.93 -0.29 -0.04 16 13 C -0.57 -15.51 7.35 -34.44 -0.25 -15.77 16 14 H 0.06 1.92 7.32 -52.49 -0.38 1.54 16 15 C 0.03 0.84 5.47 -17.82 -0.10 0.74 16 16 N -0.91 -27.23 13.70 55.43 0.76 -26.47 16 17 Si 1.05 25.49 26.72 -169.99 -4.54 20.95 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.72 7.00 56.52 0.40 -6.33 16 20 H -0.28 -6.48 6.84 56.52 0.39 -6.09 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.07 1.27 7.10 -51.93 -0.37 0.90 16 23 H 0.04 0.54 8.13 -51.93 -0.42 0.11 16 24 H 0.08 1.68 7.25 -51.93 -0.38 1.31 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 29 H 0.06 1.49 6.93 -51.93 -0.36 1.13 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 36 H 0.02 0.29 8.14 -51.92 -0.42 -0.14 16 37 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.07 1.53 7.32 -51.93 -0.38 1.15 16 39 H 0.27 8.02 8.72 -40.82 -0.36 7.67 16 LS Contribution 298.40 15.07 4.50 4.50 Total: -1.00 -28.47 298.40 -7.97 -36.44 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.22 Total: -1.60 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.45 Total: -10.33 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -1.15 Total: -49.96 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.54 Total: 20.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.47 -7.97 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250605221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.647 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds