Wall clock time and date at job start Mon Mar 30 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47470 * 2 1 4 4 C 1.53003 * 109.46985 * 120.00315 * 2 1 3 5 5 N 1.46903 * 109.47480 * 51.39553 * 4 2 1 6 6 C 1.46953 * 111.01851 * 238.15261 * 5 4 2 7 7 C 1.53053 * 109.38079 * 176.83288 * 6 5 4 8 8 N 1.46952 * 109.36726 * 58.38761 * 7 6 5 9 9 C 1.46894 * 111.00394 * 176.81085 * 8 7 6 10 10 C 1.46958 * 110.87936 * 300.68400 * 8 7 6 11 11 C 1.46958 * 110.99760 * 114.33732 * 5 4 2 12 12 H 1.08993 * 109.49056 * 63.20323 * 11 5 4 13 13 C 1.50698 * 109.48654 * 303.15454 * 11 5 4 14 14 H 1.07997 * 120.00414 * 323.76925 * 13 11 5 15 15 C 1.37885 * 119.99582 * 143.77163 * 13 11 5 16 16 N 1.31512 * 119.99851 * 187.08476 * 15 13 11 17 17 Si 1.86801 * 119.99906 * 6.80225 * 15 13 11 18 18 H 1.48497 * 109.47019 * 180.27971 * 17 15 13 19 19 H 1.48502 * 109.47084 * 300.27778 * 17 15 13 20 20 H 1.48501 * 109.46985 * 60.28081 * 17 15 13 21 21 H 1.08995 * 109.46671 * 68.11489 * 1 2 3 22 22 H 1.08997 * 109.47490 * 188.11897 * 1 2 3 23 23 H 1.09003 * 109.47004 * 308.12043 * 1 2 3 24 24 H 1.08999 * 109.46811 * 239.99808 * 2 1 3 25 25 H 1.09002 * 109.46922 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47004 * 300.00141 * 3 2 1 27 27 H 1.08998 * 109.46849 * 59.99739 * 3 2 1 28 28 H 1.09000 * 109.47077 * 291.39815 * 4 2 1 29 29 H 1.09001 * 109.47075 * 171.39576 * 4 2 1 30 30 H 1.09000 * 109.48949 * 56.84919 * 6 5 4 31 31 H 1.09001 * 109.48761 * 296.80874 * 6 5 4 32 32 H 1.08998 * 109.48454 * 298.41837 * 7 6 5 33 33 H 1.09002 * 109.50379 * 178.36778 * 7 6 5 34 34 H 1.08998 * 109.47557 * 183.79467 * 9 8 7 35 35 H 1.09001 * 109.47175 * 303.80240 * 9 8 7 36 36 H 1.09008 * 109.46966 * 63.79570 * 9 8 7 37 37 H 1.09010 * 109.48512 * 299.34909 * 10 8 7 38 38 H 1.09002 * 109.49188 * 179.29159 * 10 8 7 39 39 H 0.96996 * 120.00164 * 355.95894 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.3885 -2.0336 1.3573 6 6 0.6656 -2.1598 2.6305 7 6 -0.0622 -3.5056 2.6700 8 7 0.9141 -4.5925 2.5120 9 6 0.2631 -5.9049 2.6202 10 6 1.6367 -4.4664 1.2385 11 6 2.3646 -3.1207 1.1990 12 1 3.0922 -3.0770 2.0093 13 6 3.0737 -2.9712 -0.1223 14 1 2.5353 -2.6109 -0.9864 15 6 4.4099 -3.2946 -0.2280 16 7 5.0635 -3.0343 -1.3391 17 14 5.2937 -4.0950 1.2100 18 1 6.7138 -4.3337 0.8473 19 1 5.2287 -3.1985 2.3921 20 1 4.6412 -5.3892 1.5336 21 1 -0.3632 0.3831 -0.9536 22 1 -0.3634 -1.0173 0.1451 23 1 -0.3633 0.6344 0.8085 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.8076 -0.1265 2.1326 29 1 3.1191 -0.8564 1.1757 30 1 -0.0599 -1.3512 2.7185 31 1 1.3735 -2.1049 3.4576 32 1 -0.7897 -3.5495 1.8595 33 1 -0.5755 -3.6139 3.6255 34 1 1.0172 -6.6901 2.5670 35 1 -0.2643 -5.9715 3.5718 36 1 -0.4468 -6.0269 1.8021 37 1 0.9284 -4.5213 0.4116 38 1 2.3622 -5.2751 1.1504 39 1 4.5927 -2.6691 -2.1045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250605221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:00 Heat of formation + Delta-G solvation = -21.307221 kcal Electronic energy + Delta-G solvation = -17130.463202 eV Core-core repulsion = 14685.688707 eV Total energy + Delta-G solvation = -2444.774495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.32022 -37.45748 -35.32360 -34.42044 -31.99077 -29.52023 -27.88802 -26.91227 -25.98089 -24.02628 -22.85365 -20.71777 -20.43520 -19.77041 -16.89588 -16.56999 -16.06998 -15.74697 -15.58301 -15.39361 -15.14238 -14.95895 -14.37405 -13.80779 -13.39128 -13.26269 -13.12938 -13.03080 -12.89432 -12.71412 -12.33992 -12.20698 -12.05450 -11.84586 -11.74536 -11.66274 -11.28466 -11.26625 -10.91757 -10.52085 -9.28504 -8.91162 -8.71293 -6.35686 1.42596 1.47272 1.67859 2.44149 2.95144 3.16399 3.34043 4.05424 4.12611 4.22373 4.26686 4.35014 4.43326 4.49779 4.52815 4.63946 4.67085 4.76507 4.81047 4.85379 4.89287 4.92879 4.98350 5.01441 5.07209 5.13168 5.21613 5.28527 5.39284 5.59147 5.66005 5.78704 6.05891 6.13604 6.18012 6.33867 6.69482 6.76863 7.43519 8.67731 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.015080 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.797278 B = 1856.284012 C = 3132.883735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.080 3.920 5 N -0.538 5.538 6 C 0.052 3.948 7 C 0.064 3.936 8 N -0.564 5.564 9 C 0.027 3.973 10 C 0.076 3.924 11 C 0.193 3.807 12 H -0.002 1.002 13 C -0.561 4.561 14 H 0.025 0.975 15 C -0.019 4.019 16 N -0.941 5.941 17 Si 1.086 2.914 18 H -0.287 1.287 19 H -0.272 1.272 20 H -0.259 1.259 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.093 0.907 31 H 0.026 0.974 32 H 0.030 0.970 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.015 0.985 38 H 0.055 0.945 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 2.000 9.548 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 C -0.195 4.195 4 C -0.048 4.048 5 N -0.263 5.263 6 C -0.076 4.076 7 C -0.064 4.064 8 N -0.289 5.289 9 C -0.121 4.121 10 C -0.053 4.053 11 C 0.085 3.915 12 H 0.016 0.984 13 C -0.601 4.601 14 H 0.043 0.957 15 C -0.217 4.217 16 N -0.578 5.578 17 Si 0.909 3.091 18 H -0.213 1.213 19 H -0.198 1.198 20 H -0.183 1.183 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.111 0.889 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.934 1.441 10.066 13.536 hybrid contribution -1.102 0.447 -1.386 1.827 sum -10.037 1.888 8.680 13.403 Atomic orbital electron populations 1.21574 0.94003 1.01721 1.00707 1.20977 0.96960 0.95140 0.97164 1.21756 1.00093 0.95249 1.02370 1.21828 0.96401 0.89375 0.97194 1.62155 1.29056 1.02556 1.32520 1.22339 0.97412 0.97700 0.90122 1.22158 0.92880 0.90041 1.01339 1.62287 1.28396 1.03968 1.34207 1.22383 0.98135 0.90067 1.01512 1.22285 0.96104 0.98520 0.88389 1.19597 0.89314 0.88235 0.94386 0.98417 1.21974 0.96449 1.46046 0.95586 0.95699 1.27000 0.96017 0.95315 1.03410 1.70954 1.38414 1.44005 1.04405 0.83372 0.75405 0.77554 0.72783 1.21337 1.19803 1.18328 0.93618 0.92922 0.91917 0.95316 0.94365 0.92026 0.91113 0.92157 0.95802 0.88900 0.95597 0.95132 0.88052 0.91701 0.89281 0.95990 0.96715 0.92643 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 9.10 71.98 0.65 -3.19 16 2 C -0.08 -3.09 3.21 -10.79 -0.03 -3.13 16 3 C -0.14 -4.18 9.18 71.98 0.66 -3.52 16 4 C 0.08 3.20 4.35 86.30 0.38 3.58 16 5 N -0.54 -22.21 3.10 -874.88 -2.72 -24.92 16 6 C 0.05 1.72 5.28 86.31 0.46 2.18 16 7 C 0.06 1.94 5.62 86.31 0.49 2.42 16 8 N -0.56 -19.80 4.97 -921.94 -4.58 -24.38 16 9 C 0.03 0.74 9.60 127.69 1.23 1.96 16 10 C 0.08 3.29 4.82 86.31 0.42 3.70 16 11 C 0.19 9.22 1.36 44.17 0.06 9.28 16 12 H 0.00 -0.09 5.66 -2.39 -0.01 -0.10 16 13 C -0.56 -31.71 7.35 25.60 0.19 -31.52 16 14 H 0.02 1.57 7.32 -2.91 -0.02 1.55 16 15 C -0.02 -1.11 5.47 84.66 0.46 -0.65 16 16 N -0.94 -59.18 13.70 21.45 0.29 -58.89 16 17 Si 1.09 52.04 26.72 68.60 1.83 53.87 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.27 -12.40 7.00 99.48 0.70 -11.70 16 20 H -0.26 -11.41 6.84 99.48 0.68 -10.73 16 21 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.83 7.10 -2.39 -0.02 1.81 16 23 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 24 H 0.03 1.32 7.25 -2.39 -0.02 1.31 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 2.05 7.53 -2.39 -0.02 2.03 16 29 H 0.02 1.13 6.93 -2.39 -0.02 1.11 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 2.39 8.13 -2.39 -0.02 2.37 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.93 8.13 -2.39 -0.02 1.91 16 36 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.06 2.50 7.32 -2.39 -0.02 2.48 16 39 H 0.25 16.13 8.72 -92.71 -0.81 15.32 16 Total: -1.00 -64.69 298.40 0.68 -64.01 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.90 Total: 9.19 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.95 Total: -18.87 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -7.00 Total: -108.20 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.83 Total: 53.87 kcal Total: -64.69 0.68 -64.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250605221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.702 kcal (2) G-P(sol) polarization free energy of solvation -64.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds