Wall clock time and date at job start Mon Mar 30 2020 03:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46960 * 111.00061 * 2 1 4 4 C 1.53049 * 109.36168 * 176.80878 * 3 2 1 5 5 N 1.46963 * 109.36378 * 58.40474 * 4 3 2 6 6 C 1.46898 * 110.99974 * 176.81067 * 5 4 3 7 7 C 1.53003 * 109.47423 * 70.59875 * 6 5 4 8 8 C 1.52999 * 109.47207 * 190.59927 * 6 5 4 9 9 C 1.52998 * 109.47199 * 310.60061 * 6 5 4 10 10 C 1.46955 * 110.87703 * 300.67201 * 5 4 3 11 11 H 1.09008 * 109.49444 * 299.33456 * 10 5 4 12 12 C 1.50699 * 109.49141 * 179.28837 * 10 5 4 13 13 H 1.07997 * 119.99704 * 325.55514 * 12 10 5 14 14 C 1.37881 * 120.00061 * 145.54894 * 12 10 5 15 15 N 1.31509 * 120.00014 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99728 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47255 * 90.00282 * 16 14 12 18 18 H 1.48498 * 109.46831 * 210.00387 * 16 14 12 19 19 H 1.48501 * 109.47346 * 329.99831 * 16 14 12 20 20 C 1.46954 * 111.00063 * 236.19713 * 2 1 3 21 21 H 1.08999 * 109.46596 * 56.04851 * 1 2 3 22 22 H 1.08999 * 109.47073 * 176.04665 * 1 2 3 23 23 H 1.08998 * 109.47099 * 296.05085 * 1 2 3 24 24 H 1.08989 * 109.48745 * 56.84420 * 3 2 1 25 25 H 1.08997 * 109.48339 * 296.77823 * 3 2 1 26 26 H 1.09001 * 109.48601 * 178.36111 * 4 3 2 27 27 H 1.08995 * 109.49490 * 298.41555 * 4 3 2 28 28 H 1.08997 * 109.46762 * 59.99974 * 7 6 5 29 29 H 1.09001 * 109.47355 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47016 * 300.00044 * 7 6 5 31 31 H 1.09004 * 109.47101 * 36.97751 * 8 6 5 32 32 H 1.08998 * 109.47370 * 156.97493 * 8 6 5 33 33 H 1.08998 * 109.47374 * 276.97613 * 8 6 5 34 34 H 1.08997 * 109.47253 * 59.99948 * 9 6 5 35 35 H 1.09001 * 109.47248 * 180.02562 * 9 6 5 36 36 H 1.09005 * 109.47233 * 300.00352 * 9 6 5 37 37 H 0.97003 * 119.99701 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.49056 * 63.22459 * 20 2 1 39 39 H 1.09005 * 109.48805 * 303.15818 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 0.0804 5 7 4.0501 0.5658 -1.0598 6 6 5.5191 0.5657 -1.0597 7 6 6.0291 -0.2984 0.0953 8 6 6.0291 -0.0025 -2.3856 9 6 6.0292 1.9980 -0.8888 10 6 3.5235 -0.8062 -1.0597 11 1 3.8257 -1.3118 -0.1424 12 6 4.0686 -1.5541 -2.2490 13 1 4.2424 -1.0350 -3.1799 14 6 4.3456 -2.9010 -2.1486 15 7 4.1336 -3.5332 -1.0150 16 14 5.0220 -3.8279 -3.6226 17 1 6.5059 -3.7747 -3.6025 18 1 4.5765 -5.2433 -3.5642 19 1 4.5211 -3.2026 -4.8730 20 6 1.9957 -0.7633 -1.1400 21 1 -0.3632 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 -0.3633 0.4513 0.9232 24 1 1.6014 1.9128 0.8602 25 1 1.6938 1.8773 -0.9174 26 1 3.9178 2.3448 0.0512 27 1 3.8254 0.8482 1.0108 28 1 5.6657 -1.3188 -0.0264 29 1 7.1191 -0.2981 0.0956 30 1 5.6658 0.1064 1.0399 31 1 5.3763 0.3230 -3.1955 32 1 7.0420 0.3561 -2.5690 33 1 6.0326 -1.0914 -2.3369 34 1 5.6659 2.4028 0.0557 35 1 7.1192 1.9980 -0.8892 36 1 5.6659 2.6137 -1.7117 37 1 4.3281 -4.4809 -0.9445 38 1 1.6939 -0.2822 -2.0703 39 1 1.6013 -1.7790 -1.1109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250686557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:03 Heat of formation + Delta-G solvation = 22.535445 kcal Electronic energy + Delta-G solvation = -17580.906489 eV Core-core repulsion = 15138.033154 eV Total energy + Delta-G solvation = -2442.873334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.02709 -36.10746 -33.06059 -31.46277 -29.92602 -26.89967 -26.66122 -26.41984 -24.77777 -22.56252 -21.57642 -19.30174 -17.74443 -16.54160 -15.06578 -14.64842 -14.37971 -14.03089 -13.81624 -13.62868 -13.39079 -12.77021 -12.73313 -12.14951 -11.81005 -11.49232 -11.22046 -11.14687 -10.96635 -10.94378 -10.74966 -10.64415 -10.51494 -10.13654 -10.08274 -9.92934 -9.66376 -9.15486 -8.78207 -8.39014 -7.57147 -6.98037 -6.02298 -3.98269 3.28438 3.36849 3.39967 4.39188 4.73811 4.97487 5.33165 5.65633 5.74525 5.78525 5.85340 5.88213 6.01359 6.05968 6.12516 6.27346 6.28377 6.30774 6.45871 6.50601 6.59492 6.63785 6.72828 6.75424 6.87024 6.90836 7.07530 7.25176 7.36684 7.66572 7.68513 7.79700 7.87263 7.95970 8.19457 8.36617 8.71310 9.09048 9.57117 11.04866 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.013388 C = 0.009426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.560001 B = 2090.955930 C = 2969.758906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.550 5.550 3 C 0.064 3.936 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.125 3.875 7 C -0.176 4.176 8 C -0.126 4.126 9 C -0.142 4.142 10 C 0.204 3.796 11 H 0.048 0.952 12 C -0.494 4.494 13 H 0.069 0.931 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.884 3.116 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.076 3.924 21 H 0.015 0.985 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.261 0.739 38 H 0.019 0.981 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 7.382 1.416 7.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.065 4.065 4 C -0.078 4.078 5 N -0.256 5.256 6 C 0.035 3.965 7 C -0.235 4.235 8 C -0.183 4.183 9 C -0.200 4.200 10 C 0.097 3.903 11 H 0.066 0.934 12 C -0.534 4.534 13 H 0.087 0.913 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.052 4.052 21 H 0.034 0.966 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.646 7.191 1.494 7.373 hybrid contribution 0.234 -0.571 -0.681 0.919 sum -0.412 6.620 0.814 6.683 Atomic orbital electron populations 1.22275 0.89242 1.01178 0.99309 1.62313 1.06169 1.13177 1.45773 1.22045 0.95484 0.89859 0.99101 1.22139 0.93592 0.98135 0.93945 1.62655 1.05844 1.17819 1.39326 1.20629 0.87778 0.92606 0.95467 1.22482 0.99560 1.03548 0.97872 1.22348 0.96187 1.03953 0.95851 1.22045 0.99660 0.97432 1.00862 1.19492 0.88751 0.83381 0.98631 0.93402 1.21193 1.41417 0.93034 0.97733 0.91309 1.24942 0.95919 0.97703 0.95577 1.69945 1.48443 1.09834 1.24479 0.86716 0.79376 0.79254 0.83474 1.20538 1.21353 1.19756 1.22460 0.98345 0.96165 0.88230 0.96619 0.91927 0.92621 0.92135 0.95171 0.91688 0.95123 0.89384 0.94230 0.94490 0.92579 0.96575 0.89019 0.93407 0.93374 0.92738 0.92918 0.96273 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.63 60.07 0.58 1.06 16 2 N -0.55 -11.13 4.97 -242.76 -1.21 -12.34 16 3 C 0.06 1.16 5.62 -3.77 -0.02 1.14 16 4 C 0.05 0.97 4.77 -3.76 -0.02 0.95 16 5 N -0.53 -11.39 4.40 -212.31 -0.94 -12.33 16 6 C 0.12 2.50 0.69 -131.60 -0.09 2.41 16 7 C -0.18 -3.63 7.58 37.16 0.28 -3.35 16 8 C -0.13 -2.63 7.09 37.16 0.26 -2.37 16 9 C -0.14 -2.37 7.76 37.16 0.29 -2.09 16 10 C 0.20 4.95 1.47 -68.81 -0.10 4.84 16 11 H 0.05 1.33 5.58 -51.92 -0.29 1.04 16 12 C -0.49 -12.65 4.67 -34.44 -0.16 -12.81 16 13 H 0.07 1.79 5.72 -52.49 -0.30 1.49 16 14 C 0.06 1.59 5.08 -17.82 -0.09 1.50 16 15 N -0.89 -24.57 12.80 55.43 0.71 -23.86 16 16 Si 0.88 20.56 29.27 -169.99 -4.98 15.59 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 20 C 0.08 1.75 4.88 -3.77 -0.02 1.73 16 21 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 22 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.10 5.99 -51.93 -0.31 0.79 16 27 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 28 H 0.09 2.14 6.14 -51.93 -0.32 1.83 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.73 6.78 -51.93 -0.35 0.37 16 31 H 0.06 1.20 6.84 -51.93 -0.36 0.85 16 32 H 0.02 0.29 7.92 -51.93 -0.41 -0.12 16 33 H 0.09 2.14 5.01 -51.93 -0.26 1.88 16 34 H 0.05 0.75 6.25 -51.93 -0.32 0.42 16 35 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 284.57 15.07 4.29 4.29 Total: -1.00 -26.72 284.57 -7.84 -34.56 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.63 Total: 1.07 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.91 Total: -6.97 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -1.43 Total: -48.53 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.98 Total: 15.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.72 -7.84 -34.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250686557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.091 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds