Wall clock time and date at job start Mon Mar 30 2020 03:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47455 * 2 1 4 4 C 1.52996 * 109.47153 * 119.99989 * 2 1 3 5 5 N 1.46910 * 109.47184 * 64.53256 * 4 2 1 6 6 C 1.48560 * 110.99578 * 75.31301 * 5 4 2 7 7 C 1.54385 * 104.69248 * 159.10094 * 6 5 4 8 8 C 1.54255 * 105.06361 * 336.09021 * 7 6 5 9 9 H 1.08996 * 110.32793 * 118.89594 * 8 7 6 10 10 N 1.46506 * 110.32436 * 241.10470 * 8 7 6 11 11 C 1.46502 * 119.99936 * 58.54193 * 10 8 7 12 12 C 1.36930 * 120.00186 * 238.54487 * 10 8 7 13 13 H 1.08006 * 119.99917 * 22.38186 * 12 10 8 14 14 C 1.38808 * 120.00396 * 202.38229 * 12 10 8 15 15 N 1.31620 * 119.99644 * 17.75913 * 14 12 10 16 16 Si 1.86799 * 120.00220 * 197.75827 * 14 12 10 17 17 H 1.48497 * 109.47004 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47185 * 120.00349 * 16 14 12 19 19 H 1.48510 * 109.46871 * 239.99821 * 16 14 12 20 20 C 1.48854 * 111.13345 * 190.63777 * 5 4 2 21 21 H 1.09000 * 109.46859 * 300.00014 * 1 2 3 22 22 H 1.08999 * 109.46807 * 59.99657 * 1 2 3 23 23 H 1.08998 * 109.46742 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47342 * 240.00205 * 2 1 3 25 25 H 1.09003 * 109.46806 * 304.66083 * 3 2 1 26 26 H 1.08998 * 109.46567 * 64.65290 * 3 2 1 27 27 H 1.08997 * 109.47529 * 184.65524 * 3 2 1 28 28 H 1.09002 * 109.47387 * 304.53266 * 4 2 1 29 29 H 1.09002 * 109.47363 * 184.53096 * 4 2 1 30 30 H 1.08996 * 110.41470 * 40.27162 * 6 5 4 31 31 H 1.08994 * 110.41305 * 277.93271 * 6 5 4 32 32 H 1.08999 * 110.31961 * 94.98814 * 7 6 5 33 33 H 1.08999 * 110.31949 * 217.08725 * 7 6 5 34 34 H 1.09004 * 109.46743 * 94.62226 * 11 10 8 35 35 H 1.08995 * 109.47487 * 214.62453 * 11 10 8 36 36 H 1.09004 * 109.46974 * 334.62392 * 11 10 8 37 37 H 0.97002 * 119.99895 * 179.97438 * 15 14 12 38 38 H 1.08993 * 110.39226 * 82.21517 * 20 5 4 39 39 H 1.09002 * 110.49225 * 319.84224 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6417 -2.1343 1.1957 6 6 2.4814 -2.8878 0.2292 7 6 2.3415 -4.3645 0.6571 8 6 1.9533 -4.3146 2.1491 9 1 0.9795 -4.7793 2.3028 10 7 2.9716 -4.9838 2.9626 11 6 4.3596 -4.5161 2.9291 12 6 2.6262 -6.0464 3.7540 13 1 1.7384 -6.6197 3.5311 14 6 3.4169 -6.3869 4.8429 15 7 4.2776 -5.5176 5.3286 16 14 3.2594 -8.0787 5.6189 17 1 2.2282 -8.8624 4.8926 18 1 4.5643 -8.7831 5.5396 19 1 2.8602 -7.9353 7.0422 20 6 1.8913 -2.8119 2.4974 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6102 1.9798 -0.8453 26 1 1.7464 1.9316 0.9287 27 1 3.1269 1.4436 -0.0834 28 1 1.6119 -0.2564 2.1374 29 1 3.1270 -0.6515 1.2908 30 1 3.5212 -2.5686 0.2994 31 1 2.1096 -2.7494 -0.7860 32 1 1.5582 -4.8538 0.0782 33 1 3.2892 -4.8874 0.5281 34 1 4.5276 -3.8181 3.7493 35 1 5.0325 -5.3672 3.0327 36 1 4.5513 -4.0148 1.9803 37 1 4.8299 -5.7554 6.0897 38 1 1.0734 -2.6157 3.1906 39 1 2.8382 -2.4812 2.9244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258660844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:56 Heat of formation + Delta-G solvation = 16.078387 kcal Electronic energy + Delta-G solvation = -16474.117816 eV Core-core repulsion = 14030.964483 eV Total energy + Delta-G solvation = -2443.153333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.79819 -36.06523 -34.20178 -31.32127 -29.52244 -27.67376 -27.03921 -25.95568 -24.90336 -22.40128 -21.02011 -19.74922 -18.72548 -16.83503 -15.73075 -15.40989 -14.93637 -14.22032 -14.03032 -13.43475 -13.20983 -13.07426 -12.58923 -12.30358 -12.10936 -11.95783 -11.69561 -11.23332 -11.15495 -10.93124 -10.80161 -10.63597 -10.58729 -10.52040 -10.40704 -10.31438 -10.00675 -9.76114 -9.71593 -8.51618 -8.04200 -6.73141 -5.71717 -3.15379 3.39332 3.47026 3.49467 4.33506 4.56328 4.89574 5.04324 5.22386 5.34835 5.38477 5.50013 5.61223 5.67734 5.70598 5.74707 5.81671 5.92216 5.93838 6.03675 6.06917 6.16149 6.22117 6.31671 6.41137 6.49951 6.53566 6.56834 6.69949 6.89434 6.97892 7.30631 7.32720 7.49836 7.69980 7.83803 8.42058 9.24872 9.89963 10.39440 11.33500 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056015 B = 0.005761 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.745396 B = 4858.795638 C = 4954.819137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.147 4.147 4 C 0.049 3.951 5 N -0.511 5.511 6 C 0.037 3.963 7 C -0.141 4.141 8 C 0.177 3.823 9 H 0.071 0.929 10 N -0.591 5.591 11 C 0.162 3.838 12 C -0.255 4.255 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.905 5.905 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.018 3.982 21 H 0.048 0.952 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.000 1.000 37 H 0.251 0.749 38 H 0.070 0.930 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 9.617 -10.032 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.080 4.080 5 N -0.235 5.235 6 C -0.091 4.091 7 C -0.181 4.181 8 C 0.068 3.932 9 H 0.089 0.911 10 N -0.313 5.313 11 C 0.017 3.983 12 C -0.385 4.385 13 H 0.087 0.913 14 C -0.197 4.197 15 N -0.550 5.550 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.218 1.218 20 C -0.112 4.112 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.281 9.579 -10.017 14.506 hybrid contribution 0.981 -0.699 0.823 1.458 sum -3.300 8.880 -9.194 13.202 Atomic orbital electron populations 1.21706 0.94745 1.02612 1.00318 1.21055 0.96638 0.95034 0.98154 1.21833 1.00696 0.96361 1.01587 1.22306 0.97657 0.90001 0.97993 1.65424 1.50283 1.01001 1.06793 1.23051 0.94913 0.94682 0.96472 1.22894 1.01689 0.94537 0.98953 1.21033 0.93172 0.89957 0.89077 0.91092 1.44040 1.02924 1.34963 1.49367 1.20692 0.84967 0.97930 0.94700 1.19271 1.10264 1.03841 1.05110 0.91287 1.24972 1.00046 0.98251 0.96391 1.70106 1.27226 1.32700 1.24946 0.86232 0.77397 0.84417 0.78804 1.20259 1.21662 1.21815 1.23799 1.00143 0.96846 0.90407 0.93331 0.93884 0.91297 0.91532 0.92796 0.92772 0.93025 0.91303 0.95005 0.94635 0.91426 0.92125 0.91105 0.95363 0.94325 0.98197 0.93864 0.91115 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.08 37.16 0.34 -1.23 16 2 C -0.09 -1.06 2.97 -90.62 -0.27 -1.33 16 3 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 4 C 0.05 0.70 4.24 -3.82 -0.02 0.68 16 5 N -0.51 -8.30 4.78 -229.71 -1.10 -9.40 16 6 C 0.04 0.59 5.92 -2.18 -0.01 0.57 16 7 C -0.14 -2.52 6.13 -25.35 -0.16 -2.68 16 8 C 0.18 3.73 3.54 -66.55 -0.24 3.50 16 9 H 0.07 1.53 7.92 -51.93 -0.41 1.12 16 10 N -0.59 -14.93 2.84 -171.90 -0.49 -15.42 16 11 C 0.16 4.02 7.49 59.85 0.45 4.47 16 12 C -0.26 -7.08 9.58 -15.06 -0.14 -7.22 16 13 H 0.07 1.88 7.87 -52.48 -0.41 1.47 16 14 C 0.00 0.05 4.99 -17.43 -0.09 -0.04 16 15 N -0.90 -26.66 10.96 55.49 0.61 -26.05 16 16 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 C 0.02 0.34 6.07 -2.02 -0.01 0.33 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.89 7.74 -51.93 -0.40 0.48 16 24 H 0.07 0.81 7.33 -51.93 -0.38 0.42 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.03 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.04 0.58 7.74 -51.93 -0.40 0.17 16 31 H 0.07 0.96 7.76 -51.93 -0.40 0.55 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.35 7.06 -51.93 -0.37 0.98 16 34 H 0.03 0.76 7.29 -51.93 -0.38 0.38 16 35 H 0.04 1.03 7.39 -51.93 -0.38 0.64 16 36 H 0.00 -0.01 6.92 -51.93 -0.36 -0.37 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.05 1.01 6.85 -51.93 -0.36 0.66 16 LS Contribution 301.69 15.07 4.55 4.55 Total: -1.00 -28.77 301.69 -8.44 -37.21 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -7.17 Total: -3.76 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 0.19 Total: -4.07 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.98 Total: -50.87 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.77 -8.44 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258660844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.285 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds