Wall clock time and date at job start Mon Mar 30 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47234 * 2 1 4 4 C 1.53006 * 109.47122 * 239.99946 * 2 1 3 5 5 N 1.46909 * 109.47004 * 296.76748 * 4 2 1 6 6 C 1.47907 * 110.99666 * 80.88690 * 5 4 2 7 7 C 1.53998 * 107.05651 * 214.15268 * 6 5 4 8 8 C 1.54597 * 105.13632 * 1.22889 * 7 6 5 9 9 H 1.08997 * 110.72235 * 263.41484 * 8 7 6 10 10 N 1.46507 * 110.72109 * 140.31521 * 8 7 6 11 11 C 1.46502 * 119.99585 * 301.45407 * 10 8 7 12 12 C 1.36928 * 119.99838 * 121.45107 * 10 8 7 13 13 H 1.08000 * 120.00459 * 23.11110 * 12 10 8 14 14 C 1.38823 * 119.99777 * 203.11224 * 12 10 8 15 15 N 1.31616 * 119.99891 * 10.48664 * 14 12 10 16 16 Si 1.86804 * 119.99968 * 190.48824 * 14 12 10 17 17 H 1.48501 * 109.46808 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47126 * 119.99671 * 16 14 12 19 19 H 1.48501 * 109.47079 * 239.99980 * 16 14 12 20 20 C 1.48530 * 111.00024 * 323.49365 * 5 4 2 21 21 H 1.09003 * 109.46876 * 67.25512 * 1 2 3 22 22 H 1.08995 * 109.47187 * 307.25526 * 1 2 3 23 23 H 1.09001 * 109.47160 * 187.24867 * 1 2 3 24 24 H 1.08998 * 109.47129 * 120.00365 * 2 1 3 25 25 H 1.09005 * 109.46941 * 184.74222 * 3 2 1 26 26 H 1.09005 * 109.47141 * 304.73704 * 3 2 1 27 27 H 1.08992 * 109.47390 * 64.73621 * 3 2 1 28 28 H 1.08997 * 109.46941 * 56.76357 * 4 2 1 29 29 H 1.09000 * 109.46910 * 176.77002 * 4 2 1 30 30 H 1.08998 * 109.91587 * 333.50857 * 6 5 4 31 31 H 1.08996 * 109.91332 * 94.80428 * 6 5 4 32 32 H 1.08996 * 110.30392 * 120.14128 * 7 6 5 33 33 H 1.08995 * 110.30928 * 242.21299 * 7 6 5 34 34 H 1.08996 * 109.47525 * 94.03590 * 11 10 8 35 35 H 1.09009 * 109.46367 * 214.03443 * 11 10 8 36 36 H 1.08997 * 109.47073 * 334.02631 * 11 10 8 37 37 H 0.97002 * 119.99630 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.66574 * 278.15700 * 20 5 4 39 39 H 1.09003 * 110.66850 * 41.28203 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 1.6152 -2.1271 -1.2108 6 6 0.2145 -2.2699 -1.6640 7 6 -0.4097 -3.4168 -0.8474 8 6 0.7098 -3.8866 0.1098 9 1 1.2317 -4.7504 -0.3017 10 7 0.1639 -4.1954 1.4338 11 6 -0.5482 -3.1633 2.1915 12 6 0.3192 -5.4488 1.9630 13 1 1.1229 -6.0837 1.6207 14 6 -0.5566 -5.9032 2.9395 15 7 -1.6506 -5.2235 3.2102 16 14 -0.1823 -7.4796 3.8694 17 1 1.0985 -8.0504 3.3804 18 1 -0.0710 -7.1838 5.3204 19 1 -1.2769 -8.4579 3.6460 20 6 1.6476 -2.6552 0.1770 21 1 -0.3633 0.3973 -0.9478 22 1 -0.3633 0.6221 0.8179 23 1 -0.3633 -1.0195 0.1297 24 1 1.8934 -0.5139 0.8899 25 1 3.1268 1.4435 -0.0850 26 1 1.6091 1.9802 -0.8445 27 1 1.7477 1.9312 0.9293 28 1 1.6301 -0.2420 -2.1383 29 1 3.1285 -0.6714 -1.2787 30 1 -0.3311 -1.3442 -1.4813 31 1 0.1910 -2.5146 -2.7258 32 1 -1.2659 -3.0539 -0.2790 33 1 -0.7115 -4.2302 -1.5071 34 1 -1.6182 -3.2461 2.0013 35 1 -0.3569 -3.2974 3.2562 36 1 -0.1990 -2.1787 1.8808 37 1 -2.2624 -5.5409 3.8928 38 1 2.6588 -2.9562 0.4505 39 1 1.2621 -1.9158 0.8791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258660866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:59 Heat of formation + Delta-G solvation = 38.422487 kcal Electronic energy + Delta-G solvation = -17006.558698 eV Core-core repulsion = 14564.374278 eV Total energy + Delta-G solvation = -2442.184421 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.57525 -35.81216 -33.93648 -31.28322 -29.64981 -27.82417 -27.15500 -25.94887 -24.90548 -22.67097 -20.73952 -19.72657 -18.79280 -16.92243 -15.92186 -15.50646 -14.60746 -14.42669 -14.18509 -13.45111 -13.14255 -12.77358 -12.57759 -12.37424 -12.09330 -11.97849 -11.46412 -11.39529 -11.07812 -10.94354 -10.89832 -10.62385 -10.56224 -10.37115 -10.32129 -10.25551 -10.02658 -9.79167 -9.52908 -8.51662 -7.81092 -6.70464 -5.69414 -3.15421 3.39628 3.46775 3.49064 4.38854 4.59000 4.89069 4.98694 5.16146 5.35669 5.38787 5.49991 5.61737 5.67092 5.68499 5.78727 5.81202 5.87030 5.97067 6.00005 6.08158 6.19975 6.23503 6.27148 6.39944 6.46612 6.57462 6.60208 6.79787 6.94076 7.00576 7.34534 7.44084 7.49158 7.76597 7.84420 8.44091 9.27747 9.91094 10.40236 11.35633 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043019 B = 0.007075 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.716752 B = 3956.885709 C = 4109.073810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.138 4.138 3 C -0.141 4.141 4 C 0.052 3.948 5 N -0.516 5.516 6 C 0.018 3.982 7 C -0.150 4.150 8 C 0.180 3.820 9 H 0.072 0.928 10 N -0.591 5.591 11 C 0.163 3.837 12 C -0.252 4.252 13 H 0.069 0.931 14 C 0.000 4.000 15 N -0.910 5.910 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.002 3.998 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.043 0.957 36 H -0.001 1.001 37 H 0.251 0.749 38 H 0.070 0.930 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.624 10.406 -7.093 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.157 4.157 3 C -0.199 4.199 4 C -0.077 4.077 5 N -0.239 5.239 6 C -0.110 4.110 7 C -0.190 4.190 8 C 0.070 3.930 9 H 0.090 0.910 10 N -0.313 5.313 11 C 0.018 3.982 12 C -0.382 4.382 13 H 0.087 0.913 14 C -0.197 4.197 15 N -0.555 5.555 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.218 1.218 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.849 10.061 -7.295 13.340 hybrid contribution -0.528 -0.315 1.045 1.213 sum 4.321 9.745 -6.249 12.357 Atomic orbital electron populations 1.22255 0.95294 1.03179 1.00978 1.21862 0.96466 0.96538 1.00877 1.21766 1.00674 0.96072 1.01410 1.22343 1.00329 0.88574 0.96451 1.64911 1.21304 1.16050 1.21603 1.23243 0.89186 0.99217 0.99337 1.22980 1.00408 0.97089 0.98546 1.21179 0.91443 0.94577 0.85810 0.90987 1.43913 1.64611 1.09488 1.13250 1.20779 0.95344 0.86602 0.95428 1.19307 1.08654 0.91850 1.18370 0.91294 1.25038 0.95418 0.98171 1.01117 1.70075 1.11318 1.39751 1.34390 0.86170 0.77588 0.83115 0.79612 1.20304 1.21699 1.21766 1.24049 1.01005 0.98814 0.88845 0.92954 0.92991 0.90566 0.89860 0.92842 0.93043 0.92930 0.91702 0.91147 0.92383 0.91838 0.91367 0.92165 0.95480 0.93826 0.98302 0.93882 0.91151 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 7.23 37.16 0.27 -1.90 16 2 C -0.14 -1.78 2.38 -90.62 -0.22 -2.00 16 3 C -0.14 -1.50 9.19 37.15 0.34 -1.16 16 4 C 0.05 0.69 5.31 -3.82 -0.02 0.67 16 5 N -0.52 -8.26 5.54 -230.44 -1.28 -9.54 16 6 C 0.02 0.29 5.69 -2.75 -0.02 0.27 16 7 C -0.15 -2.84 6.07 -25.37 -0.15 -2.99 16 8 C 0.18 3.80 3.56 -66.07 -0.23 3.56 16 9 H 0.07 1.59 7.93 -51.93 -0.41 1.17 16 10 N -0.59 -14.88 2.93 -171.35 -0.50 -15.39 16 11 C 0.16 4.00 7.77 59.85 0.46 4.47 16 12 C -0.25 -6.99 9.62 -15.06 -0.14 -7.14 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C 0.00 0.01 5.14 -17.43 -0.09 -0.08 16 15 N -0.91 -26.67 10.59 55.49 0.59 -26.08 16 16 Si 0.90 22.05 29.57 -169.99 -5.03 17.02 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C 0.00 0.04 5.14 -1.90 -0.01 0.03 16 21 H 0.05 0.64 7.43 -51.93 -0.39 0.26 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.21 3.34 -51.93 -0.17 1.04 16 24 H 0.08 1.22 5.85 -51.93 -0.30 0.92 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.86 4.10 -51.93 -0.21 0.65 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.39 6.85 -51.93 -0.36 1.04 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.03 0.72 7.32 -51.93 -0.38 0.34 16 35 H 0.04 1.16 7.20 -51.92 -0.37 0.79 16 36 H 0.00 -0.03 5.08 -51.93 -0.26 -0.29 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.23 2.31 -51.93 -0.12 1.11 16 LS Contribution 283.66 15.07 4.27 4.27 Total: -1.00 -28.74 283.66 -8.07 -36.81 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.32 Total: -0.85 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.19 Total: -6.26 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -1.19 Total: -51.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.74 -8.07 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258660866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.236 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds