Wall clock time and date at job start Mon Mar 30 2020 03:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46848 * 110.99958 * 294.20187 * 5 4 3 7 7 C 1.53034 * 109.52086 * 174.16220 * 6 5 4 8 8 C 1.53116 * 109.27766 * 59.18490 * 7 6 5 9 9 C 1.53110 * 109.16138 * 302.34128 * 8 7 6 10 10 H 1.09002 * 109.53768 * 297.69510 * 9 8 7 11 11 N 1.46505 * 109.50715 * 177.59597 * 9 8 7 12 12 C 1.36936 * 119.99786 * 85.19629 * 11 9 8 13 13 H 1.08006 * 119.99957 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00036 * 180.02562 * 12 11 9 15 15 N 1.31618 * 120.00244 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99933 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47006 * 90.00272 * 16 14 12 18 18 H 1.48499 * 109.47047 * 210.00492 * 16 14 12 19 19 H 1.48498 * 109.47020 * 330.00090 * 16 14 12 20 20 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 21 21 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 28 28 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 29 29 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 30 30 H 1.09004 * 109.46425 * 294.18123 * 6 5 4 31 31 H 1.09002 * 109.45789 * 54.14490 * 6 5 4 32 32 H 1.08996 * 109.50601 * 299.24170 * 7 6 5 33 33 H 1.09001 * 109.53076 * 179.14445 * 7 6 5 34 34 H 1.09006 * 109.51955 * 182.43710 * 8 7 6 35 35 H 1.08996 * 109.57500 * 62.28160 * 8 7 6 36 36 H 0.96997 * 120.00070 * 265.19974 * 11 9 8 37 37 H 0.96997 * 120.00180 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46052 * 305.85601 * 20 5 4 39 39 H 1.09001 * 109.46352 * 65.82479 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7046 3.5117 -1.2499 7 6 4.1003 4.9870 -1.1555 8 6 5.6073 5.0911 -0.9051 9 6 5.9576 4.3297 0.3762 10 1 5.4484 4.7885 1.2237 11 7 7.4059 4.3759 0.5923 12 6 7.9683 5.4459 1.2358 13 1 7.3442 6.2559 1.5836 14 6 9.3406 5.4901 1.4401 15 7 9.8811 6.5182 2.0590 16 14 10.4200 4.0895 0.8379 17 1 10.8679 4.3711 -0.5496 18 1 11.6047 3.9613 1.7241 19 1 9.6456 2.8227 0.8606 20 6 5.5081 2.8735 0.2375 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.9337 0.9286 0.8892 29 1 3.9330 0.9287 -0.8908 30 1 4.2335 3.0463 -2.0817 31 1 2.6299 3.4337 -1.4140 32 1 3.5614 5.4564 -0.3326 33 1 3.8508 5.4917 -2.0888 34 1 5.8865 6.1389 -0.7940 35 1 6.1481 4.6572 -1.7461 36 1 7.9664 3.6487 0.2796 37 1 10.8399 6.5489 2.2021 38 1 5.7432 2.3319 1.1538 39 1 6.0285 2.4111 -0.6012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258689507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:32 Heat of formation + Delta-G solvation = -4.982932 kcal Electronic energy + Delta-G solvation = -16030.262598 eV Core-core repulsion = 13586.195977 eV Total energy + Delta-G solvation = -2444.066621 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.94023 -35.92129 -34.23682 -32.38243 -31.27410 -29.12036 -28.03704 -24.50145 -23.39499 -22.23772 -21.50418 -20.42873 -19.41580 -17.51961 -15.80984 -15.72118 -14.76104 -14.59487 -14.20997 -13.79887 -13.58456 -13.39971 -13.18582 -12.84351 -12.53303 -12.46040 -12.08779 -11.37990 -11.32154 -11.20278 -11.02107 -10.93669 -10.88335 -10.67137 -10.35941 -10.28229 -10.03743 -9.74539 -9.55067 -8.86800 -8.11624 -7.23879 -5.74001 -3.09348 3.38871 3.41869 3.46534 3.98479 4.61482 4.76233 4.84351 4.97318 5.12780 5.20396 5.35742 5.36663 5.48506 5.55308 5.57654 5.61752 5.65789 5.71526 5.72803 5.82788 5.84247 5.92885 5.96423 6.12610 6.16307 6.19244 6.27338 6.30022 6.50891 6.56701 6.92846 7.04260 7.31647 7.34303 8.03690 8.45371 9.23731 9.96383 10.16314 11.44520 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.005426 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.604787 B = 5159.214905 C = 5504.464207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.055 3.945 5 N -0.535 5.535 6 C 0.056 3.944 7 C -0.115 4.115 8 C -0.137 4.137 9 C 0.187 3.813 10 H 0.064 0.936 11 N -0.749 5.749 12 C -0.239 4.239 13 H 0.091 0.909 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.884 3.116 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.278 1.278 20 C 0.051 3.949 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.359 0.641 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.345 -11.459 -6.685 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.073 4.073 5 N -0.260 5.260 6 C -0.072 4.072 7 C -0.154 4.154 8 C -0.177 4.177 9 C 0.077 3.923 10 H 0.082 0.918 11 N -0.392 5.392 12 C -0.369 4.369 13 H 0.109 0.891 14 C -0.192 4.192 15 N -0.583 5.583 16 Si 0.714 3.286 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.077 4.077 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.191 0.809 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -16.509 -10.990 -6.154 20.765 hybrid contribution 1.387 -1.378 -1.130 2.258 sum -15.122 -12.369 -7.284 20.850 Atomic orbital electron populations 1.21756 0.95897 1.01348 1.01850 1.21500 0.95816 0.97049 1.01869 1.21635 0.94796 0.96257 1.02708 1.22111 0.95299 0.89353 1.00534 1.61872 1.14427 1.14734 1.34922 1.22133 0.99927 0.95231 0.89912 1.21575 0.97698 0.94838 1.01247 1.22263 0.93596 1.02191 0.99671 1.20138 0.84879 0.91615 0.95647 0.91801 1.42754 1.02022 1.23789 1.70591 1.19080 0.91490 0.97604 1.28705 0.89108 1.24660 0.96437 0.97453 1.00659 1.69698 1.11007 1.30310 1.47302 0.86555 0.80743 0.82843 0.78428 1.21178 1.21749 1.20423 1.22409 0.86076 0.99114 1.00143 0.92650 0.92864 0.92985 0.92341 0.91992 0.92039 0.91047 0.90942 0.95387 0.95497 0.91132 0.91351 0.92316 0.91501 0.93233 0.80874 0.93102 0.90785 0.95535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -1.17 5.14 -26.73 -0.14 -1.31 16 4 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 5 N -0.53 -7.78 4.66 -234.66 -1.09 -8.88 16 6 C 0.06 0.75 5.29 -3.83 -0.02 0.73 16 7 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 8 C -0.14 -2.48 5.59 -26.61 -0.15 -2.63 16 9 C 0.19 3.74 2.93 -67.85 -0.20 3.55 16 10 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 11 N -0.75 -18.12 4.93 -53.35 -0.26 -18.38 16 12 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 13 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 14 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 15 N -0.94 -29.68 13.97 55.49 0.78 -28.90 16 16 Si 0.88 22.39 27.74 -169.99 -4.71 17.68 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 19 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 20 C 0.05 0.87 4.93 -3.83 -0.02 0.85 16 21 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 29 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.36 8.53 5.66 -40.82 -0.23 8.30 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 38 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -30.52 303.30 -8.70 -39.22 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.22 Total: 3.66 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.75 Total: -8.96 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.58 Total: -56.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.52 -8.70 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258689507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.232 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds