Wall clock time and date at job start Mon Mar 30 2020 03:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46848 * 110.99958 * 294.20187 * 5 4 3 7 7 C 1.53034 * 109.52086 * 174.16220 * 6 5 4 8 8 C 1.53116 * 109.27766 * 59.18490 * 7 6 5 9 9 C 1.53110 * 109.16138 * 302.34128 * 8 7 6 10 10 H 1.09002 * 109.53768 * 297.69510 * 9 8 7 11 11 N 1.46505 * 109.50715 * 177.59597 * 9 8 7 12 12 C 1.36936 * 119.99786 * 85.19629 * 11 9 8 13 13 H 1.08006 * 119.99957 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00036 * 180.02562 * 12 11 9 15 15 N 1.31618 * 120.00244 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99933 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47006 * 90.00272 * 16 14 12 18 18 H 1.48499 * 109.47047 * 210.00492 * 16 14 12 19 19 H 1.48498 * 109.47020 * 330.00090 * 16 14 12 20 20 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 21 21 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 28 28 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 29 29 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 30 30 H 1.09004 * 109.46425 * 294.18123 * 6 5 4 31 31 H 1.09002 * 109.45789 * 54.14490 * 6 5 4 32 32 H 1.08996 * 109.50601 * 299.24170 * 7 6 5 33 33 H 1.09001 * 109.53076 * 179.14445 * 7 6 5 34 34 H 1.09006 * 109.51955 * 182.43710 * 8 7 6 35 35 H 1.08996 * 109.57500 * 62.28160 * 8 7 6 36 36 H 0.96997 * 120.00070 * 265.19974 * 11 9 8 37 37 H 0.96997 * 120.00180 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46052 * 305.85601 * 20 5 4 39 39 H 1.09001 * 109.46352 * 65.82479 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7046 3.5117 -1.2499 7 6 4.1003 4.9870 -1.1555 8 6 5.6073 5.0911 -0.9051 9 6 5.9576 4.3297 0.3762 10 1 5.4484 4.7885 1.2237 11 7 7.4059 4.3759 0.5923 12 6 7.9683 5.4459 1.2358 13 1 7.3442 6.2559 1.5836 14 6 9.3406 5.4901 1.4401 15 7 9.8811 6.5182 2.0590 16 14 10.4200 4.0895 0.8379 17 1 10.8679 4.3711 -0.5496 18 1 11.6047 3.9613 1.7241 19 1 9.6456 2.8227 0.8606 20 6 5.5081 2.8735 0.2375 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.9337 0.9286 0.8892 29 1 3.9330 0.9287 -0.8908 30 1 4.2335 3.0463 -2.0817 31 1 2.6299 3.4337 -1.4140 32 1 3.5614 5.4564 -0.3326 33 1 3.8508 5.4917 -2.0888 34 1 5.8865 6.1389 -0.7940 35 1 6.1481 4.6572 -1.7461 36 1 7.9664 3.6487 0.2796 37 1 10.8399 6.5489 2.2021 38 1 5.7432 2.3319 1.1538 39 1 6.0285 2.4111 -0.6012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258689507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:32 Heat of formation + Delta-G solvation = -24.970348 kcal Electronic energy + Delta-G solvation = -16031.129317 eV Core-core repulsion = 13586.195977 eV Total energy + Delta-G solvation = -2444.933340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20833 -37.18705 -35.65020 -33.85645 -33.03599 -30.52574 -29.22294 -25.85493 -25.00060 -23.53462 -22.58103 -21.49250 -20.92200 -19.56808 -17.14757 -16.59063 -16.49633 -15.90365 -15.57243 -15.10965 -14.91182 -14.71322 -14.65668 -14.17192 -13.86890 -13.60963 -13.17005 -12.97554 -12.90911 -12.47111 -12.17496 -12.10582 -12.01335 -11.84027 -11.78533 -11.72275 -11.63487 -11.31279 -11.09546 -10.90764 -9.34554 -9.23713 -8.02920 -5.36947 1.36219 1.40012 1.47384 2.47624 2.83071 3.28134 3.67796 3.91531 3.97992 4.07698 4.14834 4.20383 4.32005 4.39461 4.44612 4.48673 4.63626 4.69390 4.74218 4.82500 4.85017 4.93895 5.02110 5.07971 5.12579 5.14441 5.18169 5.31801 5.42655 5.44771 5.51682 5.55668 5.75324 6.11670 6.21392 6.24757 7.06518 7.81929 8.02108 9.18854 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.005426 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.604787 B = 5159.214905 C = 5504.464207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.055 3.945 5 N -0.544 5.544 6 C 0.058 3.942 7 C -0.108 4.108 8 C -0.131 4.131 9 C 0.181 3.819 10 H 0.040 0.960 11 N -0.752 5.752 12 C -0.228 4.228 13 H 0.054 0.946 14 C -0.064 4.064 15 N -0.985 5.985 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.252 1.252 20 C 0.064 3.936 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.364 0.636 37 H 0.258 0.742 38 H 0.069 0.931 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 -13.821 -8.298 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.269 5.269 6 C -0.070 4.070 7 C -0.146 4.146 8 C -0.171 4.171 9 C 0.073 3.927 10 H 0.059 0.941 11 N -0.395 5.395 12 C -0.359 4.359 13 H 0.072 0.928 14 C -0.256 4.256 15 N -0.636 5.636 16 Si 0.784 3.216 17 H -0.205 1.205 18 H -0.221 1.221 19 H -0.177 1.177 20 C -0.065 4.065 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.197 0.803 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.856 -13.384 -7.791 23.637 hybrid contribution 1.680 -0.576 -0.602 1.875 sum -16.177 -13.961 -8.393 22.957 Atomic orbital electron populations 1.21750 0.95140 1.01965 1.01940 1.21476 0.96442 0.95910 1.02126 1.21577 0.93203 0.97355 1.02539 1.22186 0.96543 0.87714 1.00784 1.61857 1.12492 1.16641 1.35939 1.22180 1.01503 0.93886 0.89417 1.21535 0.94442 0.96363 1.02283 1.22115 0.96624 0.99941 0.98404 1.20307 0.82433 0.94276 0.95719 0.94143 1.42730 1.03873 1.22625 1.70273 1.18994 0.91360 0.97724 1.27858 0.92791 1.25503 0.98004 1.00534 1.01525 1.69885 1.11282 1.32938 1.49456 0.85385 0.78381 0.80171 0.77687 1.20466 1.22098 1.17708 1.22128 0.87993 0.96181 1.00214 0.92841 0.92522 0.92156 0.91815 0.92042 0.91471 0.91899 0.91153 0.94659 0.94965 0.88610 0.91841 0.89907 0.94297 0.93022 0.80296 0.93310 0.91288 0.94991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.74 5.93 30.59 0.18 -1.56 16 3 C -0.11 -1.90 5.14 30.59 0.16 -1.74 16 4 C 0.06 1.19 4.96 86.30 0.43 1.61 16 5 N -0.54 -14.64 4.66 -896.34 -4.17 -18.81 16 6 C 0.06 1.37 5.29 86.32 0.46 1.82 16 7 C -0.11 -2.91 6.09 30.64 0.19 -2.72 16 8 C -0.13 -4.67 5.59 30.67 0.17 -4.50 16 9 C 0.18 7.24 2.93 45.04 0.13 7.37 16 10 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 11 N -0.75 -36.34 4.93 -322.70 -1.59 -37.93 16 12 C -0.23 -13.40 10.41 84.03 0.88 -12.52 16 13 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 14 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 15 N -0.98 -64.32 13.97 21.65 0.30 -64.02 16 16 Si 0.96 46.26 27.74 68.60 1.90 48.16 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 19 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 20 C 0.06 2.07 4.93 86.32 0.43 2.49 16 21 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.10 6.43 -2.39 -0.02 1.09 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.54 7.99 -2.39 -0.02 1.52 16 29 H 0.04 0.72 8.12 -2.39 -0.02 0.70 16 30 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.10 1.85 6.21 -2.39 -0.01 1.84 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.36 16.76 5.66 -92.71 -0.52 16.24 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.07 2.29 8.01 -2.39 -0.02 2.28 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.69 303.30 1.04 -65.65 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.40 Total: 21.28 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.19 Total: -14.34 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.46 Total: -120.76 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.90 Total: 48.16 kcal Total: -66.69 1.04 -65.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258689507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.681 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds