Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47430 * 179.97438 * 4 3 2 6 6 C 1.48714 * 111.01400 * 54.49276 * 5 4 3 7 7 C 1.54377 * 104.52017 * 158.96967 * 6 5 4 8 8 C 1.54259 * 105.14728 * 336.26792 * 7 6 5 9 9 H 1.08999 * 110.32618 * 118.84748 * 8 7 6 10 10 N 1.46503 * 110.32766 * 241.05429 * 8 7 6 11 11 C 1.46499 * 119.99872 * 58.53959 * 10 8 7 12 12 C 1.36936 * 120.00203 * 238.54802 * 10 8 7 13 13 H 1.07997 * 120.00250 * 23.36923 * 12 10 8 14 14 C 1.38808 * 120.00193 * 203.36831 * 12 10 8 15 15 N 1.31619 * 119.99832 * 11.56576 * 14 12 10 16 16 Si 1.86796 * 120.00454 * 191.56659 * 14 12 10 17 17 H 1.48497 * 109.47401 * 89.99682 * 16 14 12 18 18 H 1.48504 * 109.47433 * 210.00287 * 16 14 12 19 19 H 1.48500 * 109.46964 * 329.99894 * 16 14 12 20 20 C 1.48563 * 111.00181 * 170.00326 * 5 4 3 21 21 H 1.08999 * 109.47022 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46517 * 300.00073 * 1 2 3 23 23 H 1.08998 * 109.47159 * 59.99867 * 1 2 3 24 24 H 1.09000 * 109.46936 * 240.00220 * 2 1 3 25 25 H 1.09006 * 109.47137 * 119.99781 * 2 1 3 26 26 H 1.08997 * 109.47346 * 59.99582 * 3 2 1 27 27 H 1.09006 * 109.46959 * 299.99891 * 3 2 1 28 28 H 1.09005 * 109.46951 * 59.99780 * 4 3 2 29 29 H 1.08998 * 109.47153 * 300.00226 * 4 3 2 30 30 H 1.08994 * 110.38853 * 40.24375 * 6 5 4 31 31 H 1.09006 * 110.50685 * 277.75165 * 6 5 4 32 32 H 1.08998 * 110.32524 * 217.32284 * 7 6 5 33 33 H 1.09001 * 110.32645 * 95.20879 * 7 6 5 34 34 H 1.09000 * 109.46882 * 94.16682 * 11 10 8 35 35 H 1.09000 * 109.47824 * 214.16960 * 11 10 8 36 36 H 1.09006 * 109.47332 * 334.17554 * 11 10 8 37 37 H 0.97004 * 120.00605 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.41217 * 82.17793 * 20 5 4 39 39 H 1.08999 * 110.40591 * 319.73851 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.4768 3.5997 1.1294 7 6 4.4448 4.7859 1.3275 8 6 5.7907 4.3099 0.7432 9 1 6.0917 4.9509 -0.0854 10 7 6.8227 4.3024 1.7830 11 6 6.6404 3.4927 2.9902 12 6 7.9577 5.0523 1.6266 13 1 7.9516 5.9111 0.9718 14 6 9.1162 4.7088 2.3097 15 7 9.1985 3.5474 2.9234 16 14 10.5586 5.8948 2.3581 17 1 10.4253 6.7886 3.5364 18 1 11.8266 5.1284 2.4589 19 1 10.5706 6.7104 1.1171 20 6 5.5249 2.8743 0.2414 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9285 -0.8891 29 1 3.9330 0.9288 0.8908 30 1 3.4385 2.9860 2.0293 31 1 2.4811 3.9606 0.8716 32 1 4.5520 5.0141 2.3880 33 1 4.0860 5.6618 0.7868 34 1 7.1205 2.5237 2.8537 35 1 7.0892 4.0038 3.8419 36 1 5.5756 3.3479 3.1732 37 1 10.0079 3.3074 3.4011 38 1 6.0688 2.6884 -0.6847 39 1 5.8081 2.1470 1.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258698997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = 14.086141 kcal Electronic energy + Delta-G solvation = -16254.454357 eV Core-core repulsion = 13811.214633 eV Total energy + Delta-G solvation = -2443.239724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.75561 -35.82859 -34.30446 -31.70500 -29.97232 -28.32928 -26.91471 -25.89506 -23.34645 -22.35109 -21.31586 -20.10213 -18.78804 -16.83808 -15.77349 -15.51581 -15.15240 -14.32142 -14.08843 -13.64015 -13.41336 -12.87687 -12.73876 -12.49651 -12.17452 -11.90660 -11.58728 -11.16974 -11.13467 -10.91474 -10.82022 -10.67091 -10.63461 -10.56065 -10.41835 -10.35656 -10.01629 -9.76037 -9.69566 -8.52206 -8.04682 -6.71571 -5.69893 -3.16588 3.40140 3.46261 3.47749 4.32283 4.55361 4.87534 4.95130 5.08726 5.31097 5.32994 5.41705 5.54716 5.58405 5.68661 5.71239 5.73522 5.86178 5.88427 5.94420 6.01747 6.07367 6.21329 6.29044 6.30182 6.35716 6.53450 6.57019 6.72314 6.90411 6.98334 7.30794 7.37871 7.50221 7.74811 7.83430 8.43752 9.26874 9.90400 10.40059 11.35035 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.062269 B = 0.005265 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.551781 B = 5317.143108 C = 5447.510798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.044 3.956 5 N -0.515 5.515 6 C 0.038 3.962 7 C -0.142 4.142 8 C 0.177 3.823 9 H 0.071 0.929 10 N -0.593 5.593 11 C 0.165 3.835 12 C -0.255 4.255 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.909 5.909 16 Si 0.906 3.094 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.018 3.982 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.042 0.958 36 H -0.004 1.004 37 H 0.252 0.748 38 H 0.071 0.929 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 -4.368 -4.084 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.084 4.084 5 N -0.239 5.239 6 C -0.090 4.090 7 C -0.182 4.182 8 C 0.067 3.933 9 H 0.089 0.911 10 N -0.315 5.315 11 C 0.020 3.980 12 C -0.384 4.384 13 H 0.087 0.913 14 C -0.196 4.196 15 N -0.554 5.554 16 Si 0.736 3.264 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 C -0.112 4.112 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.014 0.986 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.708 -4.216 -4.494 15.029 hybrid contribution 1.089 0.028 0.895 1.410 sum -12.620 -4.188 -3.599 13.775 Atomic orbital electron populations 1.21759 0.95989 1.01299 1.01759 1.21507 0.95703 0.97099 1.01939 1.21655 0.95067 0.96365 1.02459 1.22278 0.94893 0.90657 1.00612 1.65447 1.06129 1.11006 1.41341 1.23044 0.98284 0.95522 0.92196 1.22908 0.96753 0.96832 1.01721 1.21045 0.88125 0.92917 0.91191 0.91094 1.44018 1.18261 1.53299 1.15893 1.20702 0.92984 0.95567 0.88703 1.19267 0.87912 1.05182 1.26070 0.91322 1.25045 0.97272 0.96258 1.01074 1.70067 1.27416 1.19817 1.38139 0.86231 0.82064 0.80211 0.77902 1.21545 1.21783 1.20451 1.23770 0.86690 1.00600 1.00156 0.92995 0.92853 0.92776 0.92046 0.92199 0.92036 0.91371 0.91154 0.95025 0.94571 0.91288 0.91081 0.92114 0.95496 0.93929 0.98556 0.93808 0.91085 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.24 5.93 -26.73 -0.16 -1.40 16 3 C -0.12 -1.38 4.93 -26.73 -0.13 -1.51 16 4 C 0.04 0.63 5.06 -3.83 -0.02 0.61 16 5 N -0.51 -8.60 5.49 -229.84 -1.26 -9.86 16 6 C 0.04 0.60 5.12 -2.10 -0.01 0.59 16 7 C -0.14 -2.58 6.13 -25.35 -0.16 -2.74 16 8 C 0.18 3.77 3.54 -66.55 -0.24 3.53 16 9 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 10 N -0.59 -15.10 2.84 -171.90 -0.49 -15.59 16 11 C 0.16 4.14 7.47 59.85 0.45 4.58 16 12 C -0.25 -7.09 9.60 -15.06 -0.14 -7.23 16 13 H 0.07 1.87 7.84 -52.49 -0.41 1.46 16 14 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 15 N -0.91 -26.78 10.66 55.49 0.59 -26.19 16 16 Si 0.91 22.06 29.57 -169.99 -5.03 17.03 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.02 0.34 6.10 -2.18 -0.01 0.33 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.74 6.84 -51.93 -0.36 0.38 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.48 7.88 -51.93 -0.41 0.07 16 30 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 31 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 32 H 0.07 1.37 7.05 -51.93 -0.37 1.00 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.73 7.29 -51.93 -0.38 0.35 16 35 H 0.04 1.15 7.26 -51.93 -0.38 0.77 16 36 H 0.00 -0.09 6.91 -51.93 -0.36 -0.45 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.05 1.04 6.65 -51.93 -0.35 0.69 16 LS Contribution 301.69 15.07 4.55 4.55 Total: -1.00 -29.00 301.69 -8.95 -37.95 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.17 Total: -3.69 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.14 Total: -4.20 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.16 Total: -51.63 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.00 -8.95 -37.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258698997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.034 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds