Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47430 * 179.97438 * 4 3 2 6 6 C 1.48714 * 111.01400 * 54.49276 * 5 4 3 7 7 C 1.54377 * 104.52017 * 158.96967 * 6 5 4 8 8 C 1.54259 * 105.14728 * 336.26792 * 7 6 5 9 9 H 1.08999 * 110.32618 * 118.84748 * 8 7 6 10 10 N 1.46503 * 110.32766 * 241.05429 * 8 7 6 11 11 C 1.46499 * 119.99872 * 58.53959 * 10 8 7 12 12 C 1.36936 * 120.00203 * 238.54802 * 10 8 7 13 13 H 1.07997 * 120.00250 * 23.36923 * 12 10 8 14 14 C 1.38808 * 120.00193 * 203.36831 * 12 10 8 15 15 N 1.31619 * 119.99832 * 11.56576 * 14 12 10 16 16 Si 1.86796 * 120.00454 * 191.56659 * 14 12 10 17 17 H 1.48497 * 109.47401 * 89.99682 * 16 14 12 18 18 H 1.48504 * 109.47433 * 210.00287 * 16 14 12 19 19 H 1.48500 * 109.46964 * 329.99894 * 16 14 12 20 20 C 1.48563 * 111.00181 * 170.00326 * 5 4 3 21 21 H 1.08999 * 109.47022 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46517 * 300.00073 * 1 2 3 23 23 H 1.08998 * 109.47159 * 59.99867 * 1 2 3 24 24 H 1.09000 * 109.46936 * 240.00220 * 2 1 3 25 25 H 1.09006 * 109.47137 * 119.99781 * 2 1 3 26 26 H 1.08997 * 109.47346 * 59.99582 * 3 2 1 27 27 H 1.09006 * 109.46959 * 299.99891 * 3 2 1 28 28 H 1.09005 * 109.46951 * 59.99780 * 4 3 2 29 29 H 1.08998 * 109.47153 * 300.00226 * 4 3 2 30 30 H 1.08994 * 110.38853 * 40.24375 * 6 5 4 31 31 H 1.09006 * 110.50685 * 277.75165 * 6 5 4 32 32 H 1.08998 * 110.32524 * 217.32284 * 7 6 5 33 33 H 1.09001 * 110.32645 * 95.20879 * 7 6 5 34 34 H 1.09000 * 109.46882 * 94.16682 * 11 10 8 35 35 H 1.09000 * 109.47824 * 214.16960 * 11 10 8 36 36 H 1.09006 * 109.47332 * 334.17554 * 11 10 8 37 37 H 0.97004 * 120.00605 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.41217 * 82.17793 * 20 5 4 39 39 H 1.08999 * 110.40591 * 319.73851 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.4768 3.5997 1.1294 7 6 4.4448 4.7859 1.3275 8 6 5.7907 4.3099 0.7432 9 1 6.0917 4.9509 -0.0854 10 7 6.8227 4.3024 1.7830 11 6 6.6404 3.4927 2.9902 12 6 7.9577 5.0523 1.6266 13 1 7.9516 5.9111 0.9718 14 6 9.1162 4.7088 2.3097 15 7 9.1985 3.5474 2.9234 16 14 10.5586 5.8948 2.3581 17 1 10.4253 6.7886 3.5364 18 1 11.8266 5.1284 2.4589 19 1 10.5706 6.7104 1.1171 20 6 5.5249 2.8743 0.2414 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9285 -0.8891 29 1 3.9330 0.9288 0.8908 30 1 3.4385 2.9860 2.0293 31 1 2.4811 3.9606 0.8716 32 1 4.5520 5.0141 2.3880 33 1 4.0860 5.6618 0.7868 34 1 7.1205 2.5237 2.8537 35 1 7.0892 4.0038 3.8419 36 1 5.5756 3.3479 3.1732 37 1 10.0079 3.3074 3.4011 38 1 6.0688 2.6884 -0.6847 39 1 5.8081 2.1470 1.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258698997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = -3.524219 kcal Electronic energy + Delta-G solvation = -16255.218000 eV Core-core repulsion = 13811.214633 eV Total energy + Delta-G solvation = -2444.003366 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23328 -37.30391 -35.69375 -33.41011 -31.56822 -29.68797 -28.37996 -27.92718 -24.74691 -24.00249 -22.29293 -21.43401 -20.43917 -18.86760 -17.33926 -16.91318 -16.44255 -16.03169 -15.42830 -15.04314 -14.68674 -14.48450 -14.34934 -13.79106 -13.64885 -13.16410 -13.02960 -12.83292 -12.64902 -12.45692 -12.30746 -12.26532 -12.09069 -11.96973 -11.86383 -11.75218 -11.61356 -11.43428 -11.28545 -10.64179 -9.43792 -8.78663 -7.83732 -5.33215 1.46790 1.47687 1.56864 2.49415 3.02666 3.29874 3.72802 3.83726 3.90224 4.08058 4.21588 4.27358 4.33173 4.44413 4.47524 4.64922 4.67655 4.75669 4.76606 4.82487 4.93835 4.97261 5.00067 5.11537 5.13051 5.21901 5.25750 5.34149 5.40598 5.43255 5.49300 5.59707 5.66309 5.88278 6.14678 6.33559 7.14198 7.86102 8.30963 9.19693 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.062269 B = 0.005265 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.551781 B = 5317.143108 C = 5447.510798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.109 4.109 4 C 0.043 3.957 5 N -0.512 5.512 6 C 0.044 3.956 7 C -0.134 4.134 8 C 0.166 3.834 9 H 0.064 0.936 10 N -0.608 5.608 11 C 0.186 3.814 12 C -0.266 4.266 13 H 0.072 0.928 14 C -0.052 4.052 15 N -0.941 5.941 16 Si 0.972 3.028 17 H -0.286 1.286 18 H -0.295 1.295 19 H -0.267 1.267 20 C 0.028 3.972 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.078 0.922 34 H -0.001 1.001 35 H 0.015 0.985 36 H 0.023 0.977 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 -3.922 -4.840 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.085 4.085 5 N -0.236 5.236 6 C -0.083 4.083 7 C -0.173 4.173 8 C 0.058 3.942 9 H 0.082 0.918 10 N -0.330 5.330 11 C 0.041 3.959 12 C -0.397 4.397 13 H 0.090 0.910 14 C -0.247 4.247 15 N -0.587 5.587 16 Si 0.800 3.200 17 H -0.212 1.212 18 H -0.222 1.222 19 H -0.192 1.192 20 C -0.102 4.102 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.017 0.983 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.370 -3.762 -5.276 16.680 hybrid contribution 1.534 -0.125 1.082 1.881 sum -13.836 -3.887 -4.194 14.971 Atomic orbital electron populations 1.21740 0.94738 1.02074 1.02044 1.21491 0.96753 0.95822 1.02016 1.21592 0.92725 0.97695 1.02640 1.22373 0.96836 0.89014 1.00323 1.65465 1.03960 1.12684 1.41467 1.23060 0.98919 0.94396 0.91962 1.22781 0.95220 0.98406 1.00941 1.21251 0.88623 0.93932 0.90347 0.91809 1.44211 1.18658 1.53154 1.17017 1.20356 0.93915 0.93688 0.87904 1.19617 0.88810 1.05515 1.25715 0.91048 1.25826 0.99894 0.97823 1.01175 1.70238 1.27857 1.21501 1.39131 0.85197 0.78506 0.78132 0.78192 1.21246 1.22167 1.19206 1.23486 0.88975 0.98705 0.99003 0.92048 0.92740 0.92324 0.91679 0.92514 0.91927 0.90985 0.90786 0.96050 0.94801 0.88390 0.92206 0.90297 0.98290 0.96596 0.95849 0.94305 0.91606 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -2.17 5.93 30.60 0.18 -1.98 16 3 C -0.11 -2.28 4.93 30.59 0.15 -2.13 16 4 C 0.04 1.16 5.06 86.30 0.44 1.59 16 5 N -0.51 -16.20 5.49 -881.07 -4.83 -21.03 16 6 C 0.04 1.31 5.12 86.42 0.44 1.76 16 7 C -0.13 -4.62 6.13 31.49 0.19 -4.43 16 8 C 0.17 7.03 3.54 45.89 0.16 7.19 16 9 H 0.06 2.75 7.92 -2.39 -0.02 2.73 16 10 N -0.61 -31.27 2.84 -697.78 -1.98 -33.25 16 11 C 0.19 9.53 7.47 127.77 0.95 10.49 16 12 C -0.27 -14.95 9.60 84.03 0.81 -14.14 16 13 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 14 C -0.05 -2.98 5.12 84.86 0.43 -2.54 16 15 N -0.94 -56.68 10.66 21.65 0.23 -56.45 16 16 Si 0.97 45.66 29.57 68.60 2.03 47.69 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.03 1.11 6.10 86.45 0.53 1.64 16 21 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.06 1.31 6.84 -2.39 -0.02 1.29 16 27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.02 0.63 7.88 -2.39 -0.02 0.61 16 30 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 31 H 0.10 2.40 7.68 -2.38 -0.02 2.39 16 32 H 0.06 2.22 7.05 -2.39 -0.02 2.20 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.00 -0.07 7.29 -2.39 -0.02 -0.08 16 35 H 0.02 0.86 7.26 -2.39 -0.02 0.84 16 36 H 0.02 1.04 6.91 -2.38 -0.02 1.02 16 37 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.03 1.11 6.65 -2.39 -0.02 1.09 16 Total: -1.00 -61.95 301.69 1.42 -60.53 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.98 Total: 6.53 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 5.00 Total: -4.02 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -6.59 Total: -110.73 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -61.95 1.42 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258698997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.003 kcal (2) G-P(sol) polarization free energy of solvation -61.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds