Wall clock time and date at job start Mon Mar 30 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47437 * 111.00307 * 2 1 4 4 C 1.54322 * 107.37008 * 236.65951 * 3 2 1 5 5 C 1.55402 * 102.89706 * 337.89471 * 4 3 2 6 6 H 1.09001 * 110.87036 * 277.39243 * 5 4 3 7 7 C 1.53000 * 111.02216 * 153.64049 * 5 4 3 8 8 C 1.53004 * 109.46866 * 308.38402 * 7 5 4 9 9 C 1.52999 * 109.47427 * 68.39019 * 7 5 4 10 10 C 1.53000 * 109.46896 * 188.39085 * 7 5 4 11 11 N 1.46499 * 109.47479 * 179.97438 * 10 7 5 12 12 C 1.36931 * 120.00422 * 179.97438 * 11 10 7 13 13 H 1.08005 * 119.99762 * 0.02562 * 12 11 10 14 14 C 1.38815 * 120.00493 * 180.02562 * 12 11 10 15 15 N 1.31613 * 119.99252 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00121 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47295 * 60.00044 * 16 14 12 18 18 H 1.48504 * 109.46819 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47058 * 299.99515 * 16 14 12 20 20 C 1.47841 * 111.00045 * 239.15024 * 2 1 3 21 21 H 1.09006 * 109.46808 * 59.87886 * 1 2 3 22 22 H 1.09003 * 109.47587 * 179.87232 * 1 2 3 23 23 H 1.08994 * 109.47515 * 299.88304 * 1 2 3 24 24 H 1.09006 * 109.88916 * 356.14206 * 3 2 1 25 25 H 1.08999 * 109.89131 * 117.17038 * 3 2 1 26 26 H 1.08997 * 110.70671 * 96.17679 * 4 3 2 27 27 H 1.09000 * 110.70380 * 219.41239 * 4 3 2 28 28 H 1.09003 * 109.46826 * 66.29404 * 8 7 5 29 29 H 1.08998 * 109.46828 * 186.28788 * 8 7 5 30 30 H 1.08999 * 109.47436 * 306.28729 * 8 7 5 31 31 H 1.08995 * 109.47381 * 59.99685 * 9 7 5 32 32 H 1.08998 * 109.46654 * 179.97438 * 9 7 5 33 33 H 1.09001 * 109.46698 * 299.99393 * 9 7 5 34 34 H 1.09003 * 109.47284 * 300.00027 * 10 7 5 35 35 H 1.09001 * 109.47185 * 59.99659 * 10 7 5 36 36 H 0.96999 * 119.99602 * 359.97438 * 11 10 7 37 37 H 0.97005 * 119.99654 * 179.97438 * 15 14 12 38 38 H 1.08996 * 110.37933 * 265.19745 * 20 2 1 39 39 H 1.09002 * 110.37463 * 27.54283 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3764 0.0000 4 6 2.9183 1.5164 -1.2304 5 6 3.3047 0.0441 -1.5437 6 1 4.1302 -0.2836 -0.9118 7 6 3.6484 -0.1299 -3.0244 8 6 2.5188 0.4454 -3.8812 9 6 4.9516 0.6087 -3.3358 10 6 3.8184 -1.6180 -3.3370 11 7 4.1469 -1.7848 -4.7549 12 6 4.3466 -3.0383 -5.2686 13 1 4.2616 -3.9040 -4.6285 14 6 4.6584 -3.1963 -6.6121 15 7 4.7615 -2.1413 -7.3921 16 14 4.9302 -4.9064 -7.3129 17 1 3.6989 -5.7166 -7.1327 18 1 5.2471 -4.8035 -8.7601 19 1 6.0601 -5.5583 -6.6034 20 6 1.9988 -0.7078 -1.1849 21 1 -0.3633 0.5157 -0.8890 22 1 -0.3634 -1.0277 -0.0023 23 1 -0.3634 0.5120 0.8910 24 1 1.1756 2.0892 -0.0690 25 1 2.5673 1.5549 0.9119 26 1 2.3784 1.9590 -2.0675 27 1 3.8019 2.1057 -0.9854 28 1 2.4710 1.5254 -3.7418 29 1 2.7095 0.2226 -4.9310 30 1 1.5712 -0.0021 -3.5812 31 1 5.7563 0.1989 -2.7255 32 1 5.1966 0.4843 -4.3906 33 1 4.8304 1.6689 -3.1132 34 1 4.6231 -2.0279 -2.7266 35 1 2.8899 -2.1442 -3.1152 36 1 4.2229 -1.0072 -5.3298 37 1 4.9797 -2.2516 -8.3308 38 1 2.2147 -1.7478 -0.9407 39 1 1.2890 -0.6503 -2.0101 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258807026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:14 Heat of formation + Delta-G solvation = 6.939781 kcal Electronic energy + Delta-G solvation = -16578.019802 eV Core-core repulsion = 14134.470189 eV Total energy + Delta-G solvation = -2443.549613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65748 -36.50472 -33.53562 -31.22565 -29.83860 -28.67871 -26.84032 -25.52581 -25.29034 -22.97182 -21.13885 -20.55559 -17.97738 -17.16008 -15.98566 -15.47110 -14.57362 -14.31163 -13.97430 -13.84547 -13.41152 -13.28793 -13.03942 -12.56895 -12.46295 -11.87155 -11.67114 -11.40046 -11.33948 -11.17614 -11.05297 -10.92677 -10.76995 -10.68141 -10.23696 -10.12427 -10.00752 -9.69157 -9.50049 -8.81089 -8.27611 -6.84403 -5.71998 -2.99053 3.47061 3.51224 3.52324 4.06383 4.62817 4.72318 4.77806 4.97600 5.27602 5.32158 5.41032 5.46991 5.53689 5.60516 5.63142 5.73921 5.76029 5.80621 5.92642 5.95167 6.05096 6.12620 6.19200 6.26057 6.37429 6.41566 6.42591 6.62299 6.75467 6.81061 6.96299 6.99644 7.03775 7.10042 7.74488 8.48042 9.58873 10.18760 10.53489 11.51220 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044103 B = 0.006094 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.720022 B = 4593.387101 C = 4908.318667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.142 4.142 5 C -0.080 4.080 6 H 0.080 0.920 7 C -0.061 4.061 8 C -0.142 4.142 9 C -0.134 4.134 10 C 0.163 3.837 11 N -0.729 5.729 12 C -0.236 4.236 13 H 0.068 0.932 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.287 1.287 20 C 0.042 3.958 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.080 0.920 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 8.043 12.982 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.086 4.086 4 C -0.180 4.180 5 C -0.099 4.099 6 H 0.099 0.901 7 C -0.061 4.061 8 C -0.199 4.199 9 C -0.192 4.192 10 C 0.035 3.965 11 N -0.374 5.374 12 C -0.368 4.368 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.585 5.585 16 Si 0.737 3.263 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.085 4.085 21 H 0.044 0.956 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.673 7.609 13.419 16.436 hybrid contribution -0.131 -0.321 -1.336 1.380 sum -5.803 7.288 12.083 15.258 Atomic orbital electron populations 1.22514 0.88159 1.01932 1.00194 1.63577 1.07562 1.14103 1.40929 1.22813 0.97783 0.89403 0.98640 1.22996 0.99636 0.97601 0.97746 1.22318 0.97179 0.94089 0.96358 0.90123 1.20612 0.95700 0.97177 0.92645 1.21967 0.97634 0.98996 1.01256 1.21783 0.96272 0.98300 1.02806 1.20681 0.96971 0.91346 0.87464 1.42426 1.84644 1.06221 1.04152 1.19208 1.39381 0.85474 0.92693 0.91367 1.24705 1.02962 0.97030 0.96378 1.69645 1.55782 1.27648 1.05425 0.86278 0.77950 0.84084 0.77954 1.21373 1.21749 1.21337 1.23239 0.95937 0.98664 0.90642 0.95612 0.91485 0.91796 0.93219 0.90931 0.90732 0.91009 0.93539 0.91222 0.93151 0.93116 0.91468 0.93769 0.96504 0.96387 0.78073 0.93564 0.90189 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 60.06 0.55 0.77 16 2 N -0.54 -6.83 5.44 -239.53 -1.30 -8.13 16 3 C 0.04 0.47 6.89 -2.84 -0.02 0.45 16 4 C -0.14 -1.68 5.56 -24.76 -0.14 -1.82 16 5 C -0.08 -1.11 2.38 -88.34 -0.21 -1.32 16 6 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.06 -0.99 0.36 -154.51 -0.06 -1.05 16 8 C -0.14 -2.30 7.63 37.16 0.28 -2.02 16 9 C -0.13 -2.19 8.17 37.16 0.30 -1.89 16 10 C 0.16 3.34 4.92 -4.04 -0.02 3.32 16 11 N -0.73 -18.52 4.95 -59.91 -0.30 -18.81 16 12 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 13 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 14 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.94 -28.48 13.06 55.49 0.72 -27.75 16 16 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 C 0.04 0.59 4.97 -2.30 -0.01 0.57 16 21 H 0.03 0.27 8.11 -51.93 -0.42 -0.15 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.51 7.58 -51.93 -0.39 0.12 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.90 5.65 -51.93 -0.29 0.61 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.66 6.33 -51.93 -0.33 0.33 16 29 H 0.07 1.33 6.70 -51.93 -0.35 0.99 16 30 H 0.05 0.80 5.96 -51.93 -0.31 0.49 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 33 H 0.04 0.62 7.59 -51.93 -0.39 0.22 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 36 H 0.38 10.16 5.35 -40.82 -0.22 9.94 16 37 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 39 H 0.06 0.81 5.49 -51.93 -0.28 0.52 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -29.96 293.81 -7.68 -37.64 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.64 Total: 5.33 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 0.43 Total: -10.36 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.88 Total: -54.70 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.96 -7.68 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258807026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.580 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds