Wall clock time and date at job start Mon Mar 30 2020 04:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47432 * 111.00163 * 2 1 4 4 C 1.54324 * 107.23552 * 123.25711 * 3 2 1 5 5 C 1.55139 * 103.01361 * 22.28373 * 4 3 2 6 6 H 1.09005 * 110.99176 * 82.47784 * 5 4 3 7 7 C 1.52995 * 110.98852 * 206.25177 * 5 4 3 8 8 C 1.53002 * 109.47228 * 60.83836 * 7 5 4 9 9 C 1.53006 * 109.47285 * 180.83674 * 7 5 4 10 10 C 1.53000 * 109.47597 * 300.83655 * 7 5 4 11 11 N 1.46498 * 109.47265 * 180.02562 * 10 7 5 12 12 C 1.36942 * 119.99799 * 179.97438 * 11 10 7 13 13 H 1.07998 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99835 * 179.97438 * 12 11 10 15 15 N 1.31621 * 119.99933 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00192 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46898 * 89.99910 * 16 14 12 18 18 H 1.48494 * 109.47134 * 209.99720 * 16 14 12 19 19 H 1.48499 * 109.47009 * 329.99856 * 16 14 12 20 20 C 1.47846 * 111.00024 * 120.84659 * 2 1 3 21 21 H 1.08998 * 109.47064 * 59.86878 * 1 2 3 22 22 H 1.08996 * 109.47414 * 179.87530 * 1 2 3 23 23 H 1.09002 * 109.46800 * 299.87542 * 1 2 3 24 24 H 1.08997 * 109.89253 * 242.66755 * 3 2 1 25 25 H 1.09000 * 109.88887 * 3.85350 * 3 2 1 26 26 H 1.09000 * 110.70307 * 140.66576 * 4 3 2 27 27 H 1.08992 * 110.70702 * 263.90342 * 4 3 2 28 28 H 1.08999 * 109.46875 * 66.39288 * 8 7 5 29 29 H 1.09002 * 109.47308 * 186.39323 * 8 7 5 30 30 H 1.09004 * 109.46579 * 306.39583 * 8 7 5 31 31 H 1.08998 * 109.47144 * 64.36309 * 9 7 5 32 32 H 1.09002 * 109.47442 * 184.37047 * 9 7 5 33 33 H 1.09002 * 109.46941 * 304.36457 * 9 7 5 34 34 H 1.09005 * 109.47132 * 300.00036 * 10 7 5 35 35 H 1.09001 * 109.46912 * 59.99542 * 10 7 5 36 36 H 0.96994 * 120.00141 * 0.02562 * 11 10 7 37 37 H 0.97002 * 120.00144 * 180.02562 * 15 14 12 38 38 H 1.09001 * 110.37164 * 332.46348 * 20 2 1 39 39 H 1.09002 * 110.37522 * 94.80319 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3764 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5438 6 1 4.1306 -0.2832 0.9123 7 6 3.6483 -0.1298 3.0244 8 6 2.4289 0.2281 3.8765 9 6 4.0459 -1.5835 3.2883 10 6 4.8137 0.7919 3.3894 11 7 5.1431 0.6248 4.8071 12 6 6.1613 1.3519 5.3638 13 1 6.7212 2.0488 4.7578 14 6 6.4731 1.1939 6.7071 15 7 7.4513 1.8931 7.2423 16 14 5.5042 -0.0111 7.7554 17 1 6.1535 -1.3456 7.7035 18 1 5.4721 0.4694 9.1601 19 1 4.1170 -0.1149 7.2359 20 6 1.9989 -0.7077 1.1850 21 1 -0.3633 0.5159 -0.8888 22 1 -0.3634 -1.0276 -0.0022 23 1 -0.3633 0.5119 0.8911 24 1 2.5697 1.5540 -0.9105 25 1 1.1756 2.0891 0.0689 26 1 3.8001 2.1033 0.9905 27 1 2.3745 1.9545 2.0694 28 1 1.6360 -0.4985 3.6993 29 1 2.7056 0.2142 4.9307 30 1 2.0766 1.2236 3.6064 31 1 4.9596 -1.8154 2.7410 32 1 4.2156 -1.7258 4.3556 33 1 3.2457 -2.2450 2.9563 34 1 5.6825 0.5369 2.7824 35 1 4.5305 1.8276 3.2014 36 1 4.6405 -0.0015 5.3512 37 1 7.6695 1.7825 8.1810 38 1 1.2889 -0.6503 2.0101 39 1 2.2147 -1.7479 0.9408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258807028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:16 Heat of formation + Delta-G solvation = -10.375105 kcal Electronic energy + Delta-G solvation = -16635.434118 eV Core-core repulsion = 14191.133675 eV Total energy + Delta-G solvation = -2444.300443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85616 -37.98320 -35.42946 -33.09785 -31.84944 -29.38487 -28.25875 -27.71971 -26.37696 -24.34456 -22.40386 -21.63142 -20.13337 -18.96920 -17.11789 -16.86487 -16.28400 -15.90402 -15.49831 -15.05241 -14.78258 -14.71561 -14.46289 -14.04997 -13.95678 -13.41104 -13.24332 -12.88243 -12.71855 -12.61238 -12.50144 -12.38651 -12.13572 -12.10352 -11.87518 -11.86961 -11.30137 -11.23534 -11.09669 -10.96752 -9.28315 -9.21441 -8.03547 -5.35591 1.34315 1.38212 1.45367 2.46704 3.09360 3.27838 3.49476 3.72836 3.79416 3.94674 4.10700 4.18449 4.30070 4.45173 4.47825 4.58424 4.58833 4.68158 4.78803 4.80909 4.86279 4.96376 4.98521 5.02254 5.06568 5.14490 5.16888 5.19852 5.25442 5.34689 5.46587 5.60136 5.75539 6.02684 6.17248 6.21245 7.08137 7.85318 8.05189 9.18491 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048907 B = 0.006443 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.374110 B = 4344.632399 C = 4580.566243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.045 3.955 4 C -0.142 4.142 5 C -0.076 4.076 6 H 0.080 0.920 7 C -0.055 4.055 8 C -0.141 4.141 9 C -0.136 4.136 10 C 0.166 3.834 11 N -0.753 5.753 12 C -0.233 4.233 13 H 0.054 0.946 14 C -0.064 4.064 15 N -0.985 5.985 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.252 1.252 20 C 0.048 3.952 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.017 0.983 35 H 0.022 0.978 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.059 0.941 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 -6.352 -13.936 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.083 4.083 4 C -0.181 4.181 5 C -0.095 4.095 6 H 0.098 0.902 7 C -0.056 4.056 8 C -0.198 4.198 9 C -0.193 4.193 10 C 0.040 3.960 11 N -0.400 5.400 12 C -0.364 4.364 13 H 0.072 0.928 14 C -0.255 4.255 15 N -0.636 5.636 16 Si 0.778 3.222 17 H -0.203 1.203 18 H -0.221 1.221 19 H -0.177 1.177 20 C -0.080 4.080 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.873 -6.455 -14.421 22.396 hybrid contribution -0.091 0.199 1.775 1.788 sum -15.964 -6.256 -12.646 21.305 Atomic orbital electron populations 1.22579 0.86858 1.02551 1.00910 1.63581 1.08823 1.14451 1.40348 1.22817 0.97938 0.89384 0.98139 1.22930 1.00034 0.96938 0.98160 1.22154 0.97967 0.95377 0.94016 0.90162 1.20560 0.94617 0.95618 0.94828 1.21968 0.97177 1.01726 0.98893 1.21818 1.01704 0.94881 1.00930 1.20807 0.94888 0.96774 0.83569 1.42751 1.39572 1.49772 1.07861 1.19061 1.07681 1.16094 0.93540 0.92818 1.25475 0.99829 1.02040 0.98137 1.69885 1.34053 1.46500 1.13156 0.85476 0.79704 0.79074 0.77981 1.20268 1.22077 1.17671 1.23187 0.95025 0.98540 0.91210 0.90680 0.90776 0.95504 0.90406 0.92034 0.91100 0.91326 0.90680 0.94312 0.92416 0.92800 0.94201 0.90483 0.96498 0.96008 0.79900 0.93350 0.92316 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 127.69 1.16 1.47 16 2 N -0.55 -11.05 5.44 -911.73 -4.96 -16.02 16 3 C 0.04 0.89 6.90 86.65 0.60 1.49 16 4 C -0.14 -3.30 5.14 31.78 0.16 -3.14 16 5 C -0.08 -1.81 2.39 -9.41 -0.02 -1.83 16 6 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 7 C -0.06 -1.59 0.36 -52.18 -0.02 -1.61 16 8 C -0.14 -3.89 7.61 71.98 0.55 -3.34 16 9 C -0.14 -3.74 8.16 71.98 0.59 -3.15 16 10 C 0.17 6.41 4.92 86.38 0.42 6.83 16 11 N -0.75 -35.78 4.78 -343.45 -1.64 -37.42 16 12 C -0.23 -13.61 10.47 84.03 0.88 -12.73 16 13 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 14 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 15 N -0.99 -64.21 13.97 21.65 0.30 -63.91 16 16 Si 0.95 46.07 27.74 68.60 1.90 47.97 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 19 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 20 C 0.05 0.97 5.31 86.77 0.46 1.43 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.03 0.43 8.10 -2.39 -0.02 0.41 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.10 7.58 -2.39 -0.02 1.08 16 26 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 27 H 0.07 1.67 5.87 -2.39 -0.01 1.66 16 28 H 0.07 1.68 6.35 -2.39 -0.02 1.66 16 29 H 0.04 1.25 6.71 -2.39 -0.02 1.24 16 30 H 0.06 1.56 5.97 -2.38 -0.01 1.55 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.23 6.99 -2.39 -0.02 1.21 16 33 H 0.08 1.67 7.35 -2.39 -0.02 1.65 16 34 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.02 0.87 7.25 -2.39 -0.02 0.86 16 36 H 0.37 16.60 3.25 -92.71 -0.30 16.30 16 37 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.06 1.16 5.27 -2.39 -0.01 1.15 16 39 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 Total: -1.00 -66.81 290.53 1.50 -65.31 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.65 Total: 21.99 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 5.25 Total: -17.92 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.30 Total: -117.35 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.90 Total: 47.97 kcal Total: -66.81 1.50 -65.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258807028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.937 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds