Wall clock time and date at job start Mon Mar 30 2020 03:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47256 * 2 1 4 4 C 1.53002 * 109.46626 * 240.00457 * 2 1 3 5 5 N 1.46895 * 109.47442 * 120.00528 * 2 1 3 6 6 C 1.46847 * 110.99982 * 63.94868 * 5 2 1 7 7 C 1.53034 * 109.51345 * 185.84805 * 6 5 2 8 8 C 1.53123 * 109.27992 * 300.80438 * 7 6 5 9 9 C 1.53127 * 109.15019 * 57.67185 * 8 7 6 10 10 H 1.08998 * 109.53089 * 62.30397 * 9 8 7 11 11 N 1.46493 * 109.50223 * 182.39984 * 9 8 7 12 12 C 1.36942 * 119.99912 * 274.80386 * 11 9 8 13 13 H 1.07998 * 120.00219 * 0.02562 * 12 11 9 14 14 C 1.38810 * 119.99653 * 180.02562 * 12 11 9 15 15 N 1.31624 * 120.00376 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99830 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46973 * 60.00201 * 16 14 12 18 18 H 1.48496 * 109.47190 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47142 * 300.00292 * 16 14 12 20 20 C 1.46843 * 110.99970 * 188.16232 * 5 2 1 21 21 H 1.09003 * 109.47314 * 299.99741 * 1 2 3 22 22 H 1.09002 * 109.47401 * 59.99422 * 1 2 3 23 23 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47450 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47388 * 300.00587 * 3 2 1 26 26 H 1.09001 * 109.47007 * 60.00383 * 3 2 1 27 27 H 1.08998 * 109.47527 * 299.99439 * 4 2 1 28 28 H 1.08998 * 109.47321 * 60.00430 * 4 2 1 29 29 H 1.09002 * 109.46870 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46481 * 305.85957 * 6 5 2 31 31 H 1.08994 * 109.46283 * 65.83811 * 6 5 2 32 32 H 1.08997 * 109.50952 * 60.75924 * 7 6 5 33 33 H 1.08998 * 109.50459 * 180.87821 * 7 6 5 34 34 H 1.09003 * 109.53012 * 297.76758 * 8 7 6 35 35 H 1.08997 * 109.57453 * 177.60035 * 8 7 6 36 36 H 0.97002 * 119.99866 * 94.80197 * 11 9 8 37 37 H 0.97002 * 120.00120 * 179.97438 * 15 14 12 38 38 H 1.08993 * 109.46313 * 294.17341 * 20 5 2 39 39 H 1.09004 * 109.46429 * 54.14692 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0197 -0.6926 1.1993 6 6 1.6275 -2.1076 1.1869 7 6 2.0260 -2.7602 2.5125 8 6 3.5399 -2.6327 2.7038 9 6 3.9283 -1.1521 2.6645 10 1 3.4447 -0.6265 3.4879 11 7 5.3823 -1.0244 2.7895 12 6 5.9638 -1.0044 4.0291 13 1 5.3506 -1.0832 4.9146 14 6 7.3415 -0.8829 4.1475 15 7 8.0889 -0.7863 3.0683 16 14 8.1347 -0.8549 5.8385 17 1 7.8235 -2.1194 6.5522 18 1 9.6062 -0.7187 5.6928 19 1 7.6050 0.2949 6.6148 20 6 3.4745 -0.5459 1.3345 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2494 28 1 1.6766 -0.2073 -2.1393 29 1 3.1299 -0.7208 -1.2496 30 1 0.5483 -2.1843 1.0543 31 1 2.1314 -2.6169 0.3654 32 1 1.5120 -2.2603 3.3334 33 1 1.7489 -3.8143 2.4970 34 1 4.0544 -3.1657 1.9041 35 1 3.8235 -3.0582 3.6664 36 1 5.9331 -0.9539 1.9941 37 1 9.0516 -0.7009 3.1511 38 1 3.9696 -1.0624 0.5123 39 1 3.7368 0.5118 1.3093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259434495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:37 Heat of formation + Delta-G solvation = 5.889431 kcal Electronic energy + Delta-G solvation = -16717.111423 eV Core-core repulsion = 14273.516264 eV Total energy + Delta-G solvation = -2443.595160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54514 -35.95465 -33.57477 -31.18679 -30.42950 -28.44746 -27.27518 -26.76478 -23.99282 -23.21863 -21.44891 -19.40568 -18.52009 -17.03688 -16.13719 -14.66130 -14.54805 -14.22740 -14.02836 -13.89024 -13.46474 -13.22174 -12.79390 -12.70619 -12.42952 -11.87512 -11.74980 -11.65549 -11.40865 -10.99851 -10.91163 -10.86579 -10.79821 -10.46500 -10.21361 -10.18180 -10.02903 -9.64623 -9.53650 -8.81108 -7.92255 -6.90562 -5.72071 -3.00374 3.47306 3.51375 3.52485 4.08030 4.65242 4.88753 5.00057 5.20516 5.29997 5.41908 5.51706 5.59998 5.62589 5.70304 5.77577 5.79597 5.82748 5.90349 5.92652 5.98687 6.02840 6.07025 6.17876 6.23461 6.27861 6.43726 6.46224 6.52436 6.60194 6.71629 7.04673 7.17503 7.49090 7.52148 7.75736 8.47109 9.57515 10.16123 10.50748 11.50862 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040774 B = 0.006569 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.545097 B = 4261.469628 C = 4576.333231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.101 3.899 3 C -0.144 4.144 4 C -0.181 4.181 5 N -0.523 5.523 6 C 0.054 3.946 7 C -0.115 4.115 8 C -0.136 4.136 9 C 0.183 3.817 10 H 0.054 0.946 11 N -0.725 5.725 12 C -0.234 4.234 13 H 0.070 0.930 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.286 1.286 20 C 0.048 3.952 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.382 0.618 37 H 0.255 0.745 38 H 0.029 0.971 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.644 -0.032 -7.172 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C -0.201 4.201 4 C -0.240 4.240 5 N -0.248 5.248 6 C -0.074 4.074 7 C -0.153 4.153 8 C -0.177 4.177 9 C 0.072 3.928 10 H 0.072 0.928 11 N -0.365 5.365 12 C -0.365 4.365 13 H 0.088 0.912 14 C -0.211 4.211 15 N -0.584 5.584 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.213 1.213 20 C -0.080 4.080 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.215 0.785 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.794 0.212 -6.575 16.191 hybrid contribution 1.146 -0.477 -0.107 1.246 sum -13.648 -0.266 -6.683 15.198 Atomic orbital electron populations 1.21856 0.94147 1.01664 1.01685 1.21034 0.95073 0.94393 0.88333 1.21961 1.01710 0.94705 1.01724 1.22497 1.01911 1.00889 0.98653 1.62132 1.13536 1.12329 1.36797 1.22132 0.99626 0.88252 0.97349 1.21579 0.97799 0.98880 0.97068 1.22301 0.93273 1.00584 1.01533 1.20167 0.85822 0.92348 0.94428 0.92814 1.42374 1.00185 1.87841 1.06136 1.19204 0.90174 1.41841 0.85289 0.91211 1.24730 0.96234 1.03153 0.96964 1.69656 1.04596 1.57479 1.26714 0.86272 0.78287 0.77829 0.83849 1.21337 1.21758 1.21276 1.22481 0.85914 1.01442 0.98150 0.91885 0.92712 0.92761 0.91924 0.92695 0.91771 0.92504 0.92520 0.92267 0.91348 0.95080 0.91652 0.92608 0.93196 0.92138 0.78507 0.93548 0.95239 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.36 37.16 0.31 -1.15 16 2 C 0.10 1.28 0.71 -131.61 -0.09 1.19 16 3 C -0.14 -1.79 7.97 37.16 0.30 -1.49 16 4 C -0.18 -2.18 7.75 37.16 0.29 -1.89 16 5 N -0.52 -7.85 4.47 -219.03 -0.98 -8.83 16 6 C 0.05 0.76 4.58 -3.84 -0.02 0.74 16 7 C -0.11 -1.73 6.09 -26.65 -0.16 -1.89 16 8 C -0.14 -2.57 5.59 -26.60 -0.15 -2.72 16 9 C 0.18 3.80 2.93 -67.85 -0.20 3.60 16 10 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 11 N -0.72 -18.60 5.12 -53.35 -0.27 -18.87 16 12 C -0.23 -6.60 9.93 -15.06 -0.15 -6.75 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 15 N -0.94 -28.63 13.06 55.49 0.72 -27.91 16 16 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.05 0.86 4.14 -3.83 -0.02 0.84 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.56 6.37 -51.93 -0.33 0.23 16 24 H 0.06 0.86 6.19 -51.93 -0.32 0.53 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.67 6.48 -51.93 -0.34 0.33 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.79 6.75 -51.93 -0.35 0.44 16 30 H 0.07 0.84 6.14 -51.93 -0.32 0.52 16 31 H 0.03 0.45 6.59 -51.93 -0.34 0.10 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 37 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.03 0.54 6.81 -51.93 -0.35 0.19 16 39 H 0.08 1.46 5.84 -51.93 -0.30 1.15 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -29.56 293.55 -7.86 -37.42 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.75 Total: 6.13 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 0.01 Total: -10.05 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.53 Total: -55.61 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.56 -7.86 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259434495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.309 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds