Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47574 * 2 1 4 4 C 1.52996 * 109.47642 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47188 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47072 * 180.02562 * 5 4 3 7 7 C 1.47851 * 110.99786 * 290.84523 * 6 5 4 8 8 C 1.54904 * 104.79222 * 213.63429 * 7 6 5 9 9 C 1.55140 * 101.65465 * 37.07123 * 8 7 6 10 10 H 1.08998 * 110.85769 * 82.79609 * 9 8 7 11 11 N 1.46501 * 110.70751 * 205.95983 * 9 8 7 12 12 C 1.36934 * 120.00033 * 268.60252 * 11 9 8 13 13 H 1.08000 * 120.00114 * 359.97438 * 12 11 9 14 14 C 1.38818 * 119.99602 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99622 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 120.00168 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47138 * 90.00333 * 16 14 12 18 18 H 1.48504 * 109.47075 * 210.00186 * 16 14 12 19 19 H 1.48500 * 109.47299 * 330.00380 * 16 14 12 20 20 C 1.47436 * 110.99898 * 169.99968 * 6 5 4 21 21 H 1.08996 * 109.47308 * 300.00993 * 1 2 3 22 22 H 1.09003 * 109.46541 * 60.00834 * 1 2 3 23 23 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47805 * 239.99013 * 2 1 3 25 25 H 1.09012 * 109.46930 * 119.99582 * 2 1 3 26 26 H 1.08999 * 109.47360 * 59.98741 * 3 2 1 27 27 H 1.09012 * 109.46651 * 299.99753 * 3 2 1 28 28 H 1.09002 * 109.46844 * 59.99893 * 4 3 2 29 29 H 1.08996 * 109.46961 * 299.99745 * 4 3 2 30 30 H 1.08993 * 109.47007 * 60.00172 * 5 4 3 31 31 H 1.08996 * 109.47340 * 299.99977 * 5 4 3 32 32 H 1.08997 * 110.37354 * 332.46432 * 7 6 5 33 33 H 1.08994 * 110.37029 * 94.80655 * 7 6 5 34 34 H 1.08996 * 110.99203 * 278.97760 * 8 7 6 35 35 H 1.09000 * 111.01884 * 155.17210 * 8 7 6 36 36 H 0.97003 * 119.99524 * 88.60129 * 11 9 8 37 37 H 0.96991 * 119.99611 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.88931 * 242.66034 * 20 6 5 39 39 H 1.08996 * 109.89509 * 3.69403 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 7 5.5491 2.8849 0.0000 7 6 6.0789 2.3943 1.2902 8 6 7.3848 3.1973 1.5125 9 6 6.9959 4.5899 0.9502 10 1 6.4553 5.1725 1.6962 11 7 8.1843 5.3138 0.4920 12 6 8.8520 6.1465 1.3500 13 1 8.5022 6.2699 2.3643 14 6 9.9777 6.8328 0.9156 15 7 10.6192 7.6335 1.7401 16 14 10.5822 6.6199 -0.8390 17 1 9.9340 7.6313 -1.7120 18 1 12.0555 6.8015 -0.8804 19 1 10.2377 5.2576 -1.3194 20 6 6.0774 4.2404 -0.2396 21 1 -0.3634 0.5140 0.8899 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9337 0.9284 -0.8891 29 1 3.9329 0.9288 0.8909 30 1 3.7164 3.3992 0.8895 31 1 3.7171 3.3983 -0.8904 32 1 5.3690 2.5945 2.0927 33 1 6.2948 1.3276 1.2307 34 1 8.2102 2.7646 0.9473 35 1 7.6301 3.2590 2.5728 36 1 8.4982 5.2032 -0.4191 37 1 11.4060 8.1127 1.4367 38 1 6.6498 4.2566 -1.1671 39 1 5.2555 4.9538 -0.2987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259470165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = -4.495635 kcal Electronic energy + Delta-G solvation = -15624.880291 eV Core-core repulsion = 13180.834801 eV Total energy + Delta-G solvation = -2444.045490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.85986 -36.17532 -34.37244 -32.23158 -30.80640 -29.28567 -27.69776 -25.31084 -22.87464 -22.14991 -21.15464 -20.23677 -20.04451 -17.64454 -15.96288 -15.55941 -15.46569 -14.42560 -14.16027 -14.01433 -13.62968 -13.22244 -12.98959 -12.75349 -12.45131 -12.29768 -11.89671 -11.52679 -11.44869 -11.36717 -11.13043 -10.93263 -10.83473 -10.62764 -10.58428 -10.43997 -10.34161 -10.01613 -9.60249 -8.91661 -8.07369 -7.27262 -5.78072 -3.13899 3.38586 3.42369 3.45987 4.11908 4.58981 4.68985 4.74379 4.91603 5.04493 5.12005 5.20098 5.33425 5.40185 5.45845 5.51129 5.58525 5.61748 5.68446 5.69866 5.76240 5.78173 5.85702 5.89643 6.01080 6.06334 6.12802 6.20231 6.27516 6.35397 6.45752 6.68211 6.88866 7.24401 7.34070 7.97941 8.41247 9.19246 9.91866 10.11900 11.40192 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.068872 B = 0.004318 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.451238 B = 6483.290908 C = 6611.607474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.114 4.114 5 C 0.050 3.950 6 N -0.530 5.530 7 C 0.043 3.957 8 C -0.150 4.150 9 C 0.167 3.833 10 H 0.062 0.938 11 N -0.741 5.741 12 C -0.246 4.246 13 H 0.090 0.910 14 C 0.005 3.995 15 N -0.934 5.934 16 Si 0.885 3.115 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.275 1.275 20 C 0.033 3.967 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.363 0.637 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 -13.766 -3.826 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.078 4.078 6 N -0.255 5.255 7 C -0.085 4.085 8 C -0.191 4.191 9 C 0.056 3.944 10 H 0.080 0.920 11 N -0.383 5.383 12 C -0.375 4.375 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.581 5.581 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.096 4.096 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.838 -13.922 -4.035 22.218 hybrid contribution 0.287 0.467 -0.535 0.766 sum -16.552 -13.456 -4.570 21.815 Atomic orbital electron populations 1.21783 0.96102 1.01406 1.01749 1.21522 0.95598 0.97057 1.02009 1.21595 0.95596 0.96638 1.01936 1.21558 0.94370 0.96663 1.02589 1.22320 0.88227 0.96786 1.00474 1.63562 1.06810 1.22870 1.32216 1.23013 0.96446 0.99567 0.89445 1.23390 0.96307 0.97832 1.01529 1.21358 0.88056 0.91253 0.93769 0.91961 1.42710 1.30107 1.53135 1.12327 1.19081 1.06494 1.16910 0.95055 0.89262 1.24678 0.97893 0.98991 0.97547 1.69704 1.21416 1.32330 1.34694 0.86540 0.78170 0.77848 0.85960 1.21035 1.21710 1.20155 1.23112 0.98210 0.88095 1.00163 0.92822 0.92820 0.92947 0.92046 0.92118 0.92204 0.92055 0.91330 0.92092 0.94938 0.91252 0.94107 0.91118 0.90983 0.91415 0.80371 0.93026 0.90692 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 4 C -0.11 -1.18 5.26 -26.73 -0.14 -1.32 16 5 C 0.05 0.62 4.57 -3.82 -0.02 0.60 16 6 N -0.53 -7.91 5.16 -231.26 -1.19 -9.11 16 7 C 0.04 0.63 5.78 -2.30 -0.01 0.62 16 8 C -0.15 -2.66 6.76 -24.59 -0.17 -2.83 16 9 C 0.17 3.29 3.61 -66.10 -0.24 3.06 16 10 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 11 N -0.74 -17.80 5.03 -51.66 -0.26 -18.05 16 12 C -0.25 -6.98 10.44 -15.06 -0.16 -7.13 16 13 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 14 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 15 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 16 Si 0.88 22.29 27.73 -169.99 -4.71 17.57 16 17 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 20 C 0.03 0.55 6.62 -2.84 -0.02 0.53 16 21 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.65 7.49 -51.93 -0.39 0.26 16 30 H 0.03 0.40 7.85 -51.93 -0.41 0.00 16 31 H 0.07 0.82 8.03 -51.93 -0.42 0.41 16 32 H 0.04 0.56 7.62 -51.93 -0.40 0.17 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.36 8.60 5.43 -40.82 -0.22 8.38 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 39 H 0.05 0.82 7.55 -51.93 -0.39 0.43 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -30.36 307.92 -8.82 -39.18 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.29 Total: 3.93 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.78 Total: -9.44 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.68 Total: -55.88 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.36 -8.82 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259470165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.682 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds