Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47574 * 2 1 4 4 C 1.52996 * 109.47642 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47188 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47072 * 180.02562 * 5 4 3 7 7 C 1.47851 * 110.99786 * 290.84523 * 6 5 4 8 8 C 1.54904 * 104.79222 * 213.63429 * 7 6 5 9 9 C 1.55140 * 101.65465 * 37.07123 * 8 7 6 10 10 H 1.08998 * 110.85769 * 82.79609 * 9 8 7 11 11 N 1.46501 * 110.70751 * 205.95983 * 9 8 7 12 12 C 1.36934 * 120.00033 * 268.60252 * 11 9 8 13 13 H 1.08000 * 120.00114 * 359.97438 * 12 11 9 14 14 C 1.38818 * 119.99602 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99622 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 120.00168 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47138 * 90.00333 * 16 14 12 18 18 H 1.48504 * 109.47075 * 210.00186 * 16 14 12 19 19 H 1.48500 * 109.47299 * 330.00380 * 16 14 12 20 20 C 1.47436 * 110.99898 * 169.99968 * 6 5 4 21 21 H 1.08996 * 109.47308 * 300.00993 * 1 2 3 22 22 H 1.09003 * 109.46541 * 60.00834 * 1 2 3 23 23 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47805 * 239.99013 * 2 1 3 25 25 H 1.09012 * 109.46930 * 119.99582 * 2 1 3 26 26 H 1.08999 * 109.47360 * 59.98741 * 3 2 1 27 27 H 1.09012 * 109.46651 * 299.99753 * 3 2 1 28 28 H 1.09002 * 109.46844 * 59.99893 * 4 3 2 29 29 H 1.08996 * 109.46961 * 299.99745 * 4 3 2 30 30 H 1.08993 * 109.47007 * 60.00172 * 5 4 3 31 31 H 1.08996 * 109.47340 * 299.99977 * 5 4 3 32 32 H 1.08997 * 110.37354 * 332.46432 * 7 6 5 33 33 H 1.08994 * 110.37029 * 94.80655 * 7 6 5 34 34 H 1.08996 * 110.99203 * 278.97760 * 8 7 6 35 35 H 1.09000 * 111.01884 * 155.17210 * 8 7 6 36 36 H 0.97003 * 119.99524 * 88.60129 * 11 9 8 37 37 H 0.96991 * 119.99611 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.88931 * 242.66034 * 20 6 5 39 39 H 1.08996 * 109.89509 * 3.69403 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 7 5.5491 2.8849 0.0000 7 6 6.0789 2.3943 1.2902 8 6 7.3848 3.1973 1.5125 9 6 6.9959 4.5899 0.9502 10 1 6.4553 5.1725 1.6962 11 7 8.1843 5.3138 0.4920 12 6 8.8520 6.1465 1.3500 13 1 8.5022 6.2699 2.3643 14 6 9.9777 6.8328 0.9156 15 7 10.6192 7.6335 1.7401 16 14 10.5822 6.6199 -0.8390 17 1 9.9340 7.6313 -1.7120 18 1 12.0555 6.8015 -0.8804 19 1 10.2377 5.2576 -1.3194 20 6 6.0774 4.2404 -0.2396 21 1 -0.3634 0.5140 0.8899 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9337 0.9284 -0.8891 29 1 3.9329 0.9288 0.8909 30 1 3.7164 3.3992 0.8895 31 1 3.7171 3.3983 -0.8904 32 1 5.3690 2.5945 2.0927 33 1 6.2948 1.3276 1.2307 34 1 8.2102 2.7646 0.9473 35 1 7.6301 3.2590 2.5728 36 1 8.4982 5.2032 -0.4191 37 1 11.4060 8.1127 1.4367 38 1 6.6498 4.2566 -1.1671 39 1 5.2555 4.9538 -0.2987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259470165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -24.166162 kcal Electronic energy + Delta-G solvation = -15625.733269 eV Core-core repulsion = 13180.834801 eV Total energy + Delta-G solvation = -2444.898468 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16117 -37.15308 -35.94586 -33.81302 -32.37396 -30.46207 -29.17028 -26.34360 -24.82267 -23.10313 -21.93266 -21.60463 -21.36987 -19.72568 -17.16758 -16.85344 -16.62859 -16.04749 -15.47243 -15.17525 -14.77760 -14.46608 -14.34821 -14.05358 -13.87469 -13.40966 -13.19553 -12.98906 -12.76706 -12.56818 -12.36258 -12.15043 -12.06094 -11.86139 -11.83330 -11.69033 -11.64399 -11.36768 -11.32047 -10.97626 -9.35607 -9.24942 -8.04792 -5.38865 1.38181 1.40869 1.48458 2.47154 2.96788 3.25420 3.56499 3.78521 3.98131 4.04736 4.09548 4.25395 4.27125 4.36065 4.40816 4.49057 4.58779 4.68632 4.71278 4.77908 4.91860 4.94198 4.97843 5.06220 5.09868 5.18683 5.22021 5.26491 5.35975 5.37785 5.48687 5.55233 5.73292 5.99894 6.18077 6.21340 7.04442 7.80090 7.99962 9.16684 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.068872 B = 0.004318 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.451238 B = 6483.290908 C = 6611.607474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.106 4.106 5 C 0.049 3.951 6 N -0.533 5.533 7 C 0.054 3.946 8 C -0.146 4.146 9 C 0.155 3.845 10 H 0.050 0.950 11 N -0.744 5.744 12 C -0.233 4.233 13 H 0.055 0.945 14 C -0.063 4.063 15 N -0.984 5.984 16 Si 0.957 3.043 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.253 1.253 20 C 0.044 3.956 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.367 0.633 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 -15.409 -5.366 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.144 4.144 5 C -0.079 4.079 6 N -0.258 5.258 7 C -0.074 4.074 8 C -0.187 4.187 9 C 0.046 3.954 10 H 0.068 0.932 11 N -0.387 5.387 12 C -0.364 4.364 13 H 0.073 0.927 14 C -0.255 4.255 15 N -0.634 5.634 16 Si 0.784 3.216 17 H -0.202 1.202 18 H -0.222 1.222 19 H -0.178 1.178 20 C -0.085 4.085 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.345 -15.614 -5.582 24.728 hybrid contribution 0.653 0.956 0.041 1.158 sum -17.692 -14.658 -5.541 23.634 Atomic orbital electron populations 1.21780 0.95462 1.01901 1.01881 1.21513 0.96171 0.96407 1.02049 1.21556 0.94338 0.97313 1.02127 1.21490 0.95411 0.95136 1.02376 1.22426 0.86420 0.98256 1.00832 1.63616 1.08556 1.21333 1.32258 1.22958 0.94723 0.99894 0.89778 1.23249 0.97779 0.96917 1.00708 1.21593 0.87158 0.91557 0.95137 0.93192 1.42679 1.31095 1.53054 1.11883 1.19022 1.06342 1.16780 0.94268 0.92656 1.25515 0.98434 0.99208 1.02337 1.69884 1.22263 1.34082 1.37177 0.85382 0.77006 0.78953 0.80273 1.20224 1.22194 1.17780 1.22935 0.97810 0.89514 0.98265 0.92757 0.92639 0.92325 0.91986 0.92132 0.92129 0.91763 0.91651 0.92157 0.94841 0.90637 0.92961 0.89382 0.92047 0.92148 0.79929 0.93263 0.91071 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.12 -1.72 5.21 30.59 0.16 -1.56 16 4 C -0.11 -1.92 5.26 30.59 0.16 -1.76 16 5 C 0.05 1.06 4.57 86.30 0.39 1.46 16 6 N -0.53 -14.56 5.16 -885.56 -4.57 -19.13 16 7 C 0.05 1.46 5.78 86.77 0.50 1.96 16 8 C -0.15 -5.04 6.76 31.98 0.22 -4.83 16 9 C 0.16 6.02 3.61 46.17 0.17 6.19 16 10 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 11 N -0.74 -35.39 5.03 -317.35 -1.59 -36.98 16 12 C -0.23 -13.47 10.44 84.04 0.88 -12.59 16 13 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 14 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 15 N -0.98 -63.67 13.97 21.65 0.30 -63.37 16 16 Si 0.96 46.02 27.73 68.60 1.90 47.92 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 19 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 20 C 0.04 1.38 6.62 86.65 0.57 1.95 16 21 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.10 7.49 -2.39 -0.02 1.09 16 30 H 0.03 0.74 7.85 -2.39 -0.02 0.72 16 31 H 0.08 1.58 8.03 -2.39 -0.02 1.56 16 32 H 0.05 1.31 7.62 -2.39 -0.02 1.29 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.37 16.79 5.43 -92.71 -0.50 16.28 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.07 2.33 7.72 -2.39 -0.02 2.31 16 39 H 0.06 1.84 7.55 -2.39 -0.02 1.82 16 Total: -1.00 -65.15 307.92 0.87 -64.28 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.42 Total: 22.35 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.41 Total: -15.07 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -5.86 Total: -119.48 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Total: -65.15 0.87 -64.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259470165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.116 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds