Wall clock time and date at job start Mon Mar 30 2020 03:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.39780 * 111.00116 * 2 1 4 4 C 1.54439 * 111.76661 * 170.86458 * 3 2 1 5 5 C 1.50746 * 109.02781 * 77.39472 * 4 3 2 6 6 C 1.53002 * 108.85993 * 27.79666 * 5 4 3 7 7 C 1.53003 * 108.85505 * 146.18111 * 5 4 3 8 8 C 1.54174 * 112.61245 * 266.98669 * 5 4 3 9 9 C 1.53813 * 111.96945 * 41.51705 * 8 5 4 10 10 N 1.46900 * 109.05331 * 280.40904 * 9 8 5 11 11 C 1.50701 * 109.04919 * 161.51356 * 9 8 5 12 12 H 1.08000 * 119.99881 * 357.88101 * 11 9 8 13 13 C 1.37877 * 119.99950 * 177.88797 * 11 9 8 14 14 N 1.31513 * 120.00168 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99921 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47332 * 119.99838 * 15 13 11 18 18 H 1.48496 * 109.47254 * 239.99962 * 15 13 11 19 19 C 1.47640 * 111.00012 * 231.09859 * 2 1 3 20 20 H 1.09004 * 109.47019 * 188.90290 * 1 2 3 21 21 H 1.08995 * 109.47265 * 308.90441 * 1 2 3 22 22 H 1.09000 * 109.46935 * 68.90434 * 1 2 3 23 23 H 1.08994 * 109.02077 * 291.44924 * 3 2 1 24 24 H 1.08997 * 109.02214 * 50.34896 * 3 2 1 25 25 H 1.08996 * 109.54248 * 197.26044 * 4 3 2 26 26 H 1.09002 * 109.54322 * 317.52691 * 4 3 2 27 27 H 1.09004 * 109.47307 * 76.82228 * 6 5 4 28 28 H 1.08992 * 109.47481 * 196.82982 * 6 5 4 29 29 H 1.09002 * 109.46465 * 316.82525 * 6 5 4 30 30 H 1.09004 * 109.47149 * 59.99680 * 7 5 4 31 31 H 1.08994 * 109.47445 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.46948 * 300.00093 * 7 5 4 33 33 H 1.09000 * 108.97625 * 280.87992 * 8 5 4 34 34 H 1.08993 * 108.98031 * 162.15867 * 8 5 4 35 35 H 1.00895 * 111.00225 * 182.11679 * 10 9 8 36 36 H 1.00900 * 110.99834 * 306.07015 * 10 9 8 37 37 H 0.97001 * 119.99908 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.74973 * 90.03769 * 19 2 1 39 39 H 1.08996 * 109.78763 * 329.32726 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9699 1.3049 0.0000 4 6 3.4972 1.3321 0.2277 5 6 4.1921 0.9512 -1.0546 6 6 3.2999 1.3401 -2.2351 7 6 5.5062 1.7285 -1.1546 8 6 4.4982 -0.5576 -1.1374 9 6 3.3287 -1.4114 -0.6186 10 7 3.3633 -1.4305 0.8499 11 6 3.4831 -2.8202 -1.1308 12 1 4.3049 -3.0697 -1.7856 13 6 2.5751 -3.7906 -0.7636 14 7 1.5745 -3.4869 0.0340 15 14 2.7660 -5.5368 -1.3991 16 1 3.9643 -5.6175 -2.2726 17 1 2.9268 -6.4663 -0.2521 18 1 1.5592 -5.9152 -2.1773 19 6 1.9980 -0.8656 -1.0727 20 1 -0.3633 -1.0153 0.1590 21 1 -0.3633 0.6454 0.7997 22 1 -0.3633 0.3699 -0.9588 23 1 1.7454 1.7716 -0.9591 24 1 1.4833 1.8723 0.7934 25 1 3.8037 2.3350 0.5246 26 1 3.7617 0.6216 1.0109 27 1 3.3620 2.4160 -2.3985 28 1 3.6338 0.8166 -3.1309 29 1 2.2681 1.0647 -2.0168 30 1 6.1406 1.4807 -0.3036 31 1 6.0177 1.4600 -2.0789 32 1 5.2966 2.7981 -1.1523 33 1 5.3855 -0.7725 -0.5418 34 1 4.6973 -0.8225 -2.1757 35 1 2.6272 -2.0120 1.2214 36 1 4.2659 -1.7307 1.1864 37 1 0.9355 -4.1696 0.2921 38 1 2.1307 -0.2830 -1.9843 39 1 1.3067 -1.6876 -1.2582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259517091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:14 Heat of formation + Delta-G solvation = 44.012722 kcal Electronic energy + Delta-G solvation = -17869.817994 eV Core-core repulsion = 15427.875984 eV Total energy + Delta-G solvation = -2441.942010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65606 -34.92457 -34.51836 -31.11882 -28.85267 -27.77130 -26.54771 -25.49835 -24.98320 -23.62998 -21.08488 -18.42131 -17.42752 -16.29278 -15.58884 -14.77748 -14.45306 -14.16368 -13.53134 -13.18936 -13.02361 -12.73852 -12.50173 -11.86513 -11.71679 -11.53039 -11.10589 -11.05111 -10.99258 -10.66601 -10.64176 -10.43538 -10.31794 -9.89178 -9.78092 -9.51727 -9.47191 -9.34483 -8.83644 -8.43128 -6.78258 -6.60937 -5.85669 -4.12274 3.24883 3.34535 3.38325 4.39212 5.08154 5.31294 5.50269 5.55874 5.58791 5.94910 6.09783 6.11036 6.21122 6.25996 6.27229 6.30499 6.39839 6.43534 6.50330 6.56153 6.67444 6.74497 6.77696 6.90105 7.03209 7.04116 7.10225 7.35495 7.45158 7.65404 7.84641 7.96054 8.28529 8.43358 8.73061 8.85482 9.32329 9.47921 9.71854 10.98488 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.011441 C = 0.009517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.476280 B = 2446.698307 C = 2941.412499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.523 5.523 3 C 0.078 3.922 4 C -0.112 4.112 5 C -0.058 4.058 6 C -0.169 4.169 7 C -0.137 4.137 8 C -0.086 4.086 9 C 0.243 3.757 10 N -0.818 5.818 11 C -0.545 4.545 12 H 0.050 0.950 13 C 0.067 3.933 14 N -0.877 5.877 15 Si 0.885 3.115 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.076 3.924 20 H 0.068 0.932 21 H 0.045 0.955 22 H -0.001 1.001 23 H 0.012 0.988 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.114 0.886 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.357 0.643 36 H 0.294 0.706 37 H 0.260 0.740 38 H 0.029 0.971 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 7.533 -0.867 7.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.246 5.246 3 C -0.052 4.052 4 C -0.150 4.150 5 C -0.058 4.058 6 C -0.225 4.225 7 C -0.195 4.195 8 C -0.124 4.124 9 C 0.150 3.850 10 N -0.348 5.348 11 C -0.585 4.585 12 H 0.068 0.932 13 C -0.135 4.135 14 N -0.516 5.516 15 Si 0.713 3.287 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.050 4.050 20 H 0.087 0.913 21 H 0.064 0.936 22 H 0.017 0.983 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.132 0.868 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.175 0.825 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.987 8.056 -0.432 8.127 hybrid contribution 0.005 -1.740 -1.332 2.191 sum 0.992 6.316 -1.764 6.632 Atomic orbital electron populations 1.22234 0.89466 1.01767 0.97366 1.58376 1.04399 1.11482 1.50355 1.20987 0.96105 0.90430 0.97642 1.21691 0.93858 1.00171 0.99236 1.20291 0.93929 0.96202 0.95368 1.22843 1.02559 0.99108 0.97977 1.21985 0.97877 0.98847 1.00752 1.22085 0.99200 0.91804 0.99307 1.17993 0.89368 0.90555 0.87066 1.59432 1.06649 1.59938 1.08789 1.22122 1.11097 0.95190 1.30105 0.93204 1.24975 0.95026 0.98403 0.95080 1.69790 1.14179 1.33004 1.34605 0.86663 0.77884 0.85401 0.78706 1.20075 1.21193 1.21180 1.22363 0.98926 0.94400 0.89359 0.91298 0.93611 0.98260 0.97117 0.93861 0.94395 0.86797 0.94506 0.93765 0.89259 0.93174 0.93738 0.93818 0.93864 0.93876 0.82543 0.89843 0.92985 0.95381 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.43 60.06 0.57 1.33 16 2 N -0.52 -10.88 3.31 -248.32 -0.82 -11.70 16 3 C 0.08 1.46 4.83 -6.74 -0.03 1.43 16 4 C -0.11 -2.04 4.99 -27.11 -0.14 -2.17 16 5 C -0.06 -1.04 0.72 -155.02 -0.11 -1.15 16 6 C -0.17 -2.95 6.47 37.16 0.24 -2.71 16 7 C -0.14 -2.13 7.96 37.16 0.30 -1.84 16 8 C -0.09 -1.79 3.92 -25.69 -0.10 -1.89 16 9 C 0.24 5.65 0.52 -133.42 -0.07 5.58 16 10 N -0.82 -18.86 5.38 -0.74 0.00 -18.87 16 11 C -0.54 -14.21 8.04 -34.44 -0.28 -14.49 16 12 H 0.05 1.34 7.68 -52.49 -0.40 0.93 16 13 C 0.07 1.75 4.91 -17.82 -0.09 1.67 16 14 N -0.88 -22.97 9.74 55.43 0.54 -22.43 16 15 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.08 1.73 4.27 -4.51 -0.02 1.71 16 20 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 21 H 0.05 0.78 7.86 -51.93 -0.41 0.37 16 22 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 23 H 0.01 0.21 4.97 -51.93 -0.26 -0.05 16 24 H 0.04 0.77 7.81 -51.93 -0.41 0.36 16 25 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 26 H 0.11 2.32 5.66 -51.93 -0.29 2.02 16 27 H 0.04 0.57 7.94 -51.93 -0.41 0.16 16 28 H 0.04 0.77 7.66 -51.93 -0.40 0.37 16 29 H 0.09 1.68 2.68 -51.93 -0.14 1.54 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 33 H 0.04 0.90 7.75 -51.93 -0.40 0.50 16 34 H 0.04 0.92 7.44 -51.93 -0.39 0.54 16 35 H 0.36 9.06 6.72 -39.29 -0.26 8.80 16 36 H 0.29 6.66 8.78 -39.29 -0.34 6.32 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.03 0.63 4.00 -51.93 -0.21 0.42 16 39 H 0.09 2.26 5.59 -51.93 -0.29 1.97 16 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -25.20 274.40 -7.15 -32.36 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.25 Total: 13.39 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 0.27 Total: -12.54 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.29 Total: -53.00 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.20 -7.15 -32.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259517091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.370 kcal (2) G-P(sol) polarization free energy of solvation -25.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds