Wall clock time and date at job start Mon Mar 30 2020 03:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.39780 * 111.00116 * 2 1 4 4 C 1.54439 * 111.76661 * 170.86458 * 3 2 1 5 5 C 1.50746 * 109.02781 * 77.39472 * 4 3 2 6 6 C 1.53002 * 108.85993 * 27.79666 * 5 4 3 7 7 C 1.53003 * 108.85505 * 146.18111 * 5 4 3 8 8 C 1.54174 * 112.61245 * 266.98669 * 5 4 3 9 9 C 1.53813 * 111.96945 * 41.51705 * 8 5 4 10 10 N 1.46900 * 109.05331 * 280.40904 * 9 8 5 11 11 C 1.50701 * 109.04919 * 161.51356 * 9 8 5 12 12 H 1.08000 * 119.99881 * 357.88101 * 11 9 8 13 13 C 1.37877 * 119.99950 * 177.88797 * 11 9 8 14 14 N 1.31513 * 120.00168 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99921 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47332 * 119.99838 * 15 13 11 18 18 H 1.48496 * 109.47254 * 239.99962 * 15 13 11 19 19 C 1.47640 * 111.00012 * 231.09859 * 2 1 3 20 20 H 1.09004 * 109.47019 * 188.90290 * 1 2 3 21 21 H 1.08995 * 109.47265 * 308.90441 * 1 2 3 22 22 H 1.09000 * 109.46935 * 68.90434 * 1 2 3 23 23 H 1.08994 * 109.02077 * 291.44924 * 3 2 1 24 24 H 1.08997 * 109.02214 * 50.34896 * 3 2 1 25 25 H 1.08996 * 109.54248 * 197.26044 * 4 3 2 26 26 H 1.09002 * 109.54322 * 317.52691 * 4 3 2 27 27 H 1.09004 * 109.47307 * 76.82228 * 6 5 4 28 28 H 1.08992 * 109.47481 * 196.82982 * 6 5 4 29 29 H 1.09002 * 109.46465 * 316.82525 * 6 5 4 30 30 H 1.09004 * 109.47149 * 59.99680 * 7 5 4 31 31 H 1.08994 * 109.47445 * 179.97438 * 7 5 4 32 32 H 1.08999 * 109.46948 * 300.00093 * 7 5 4 33 33 H 1.09000 * 108.97625 * 280.87992 * 8 5 4 34 34 H 1.08993 * 108.98031 * 162.15867 * 8 5 4 35 35 H 1.00895 * 111.00225 * 182.11679 * 10 9 8 36 36 H 1.00900 * 110.99834 * 306.07015 * 10 9 8 37 37 H 0.97001 * 119.99908 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.74973 * 90.03769 * 19 2 1 39 39 H 1.08996 * 109.78763 * 329.32726 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9699 1.3049 0.0000 4 6 3.4972 1.3321 0.2277 5 6 4.1921 0.9512 -1.0546 6 6 3.2999 1.3401 -2.2351 7 6 5.5062 1.7285 -1.1546 8 6 4.4982 -0.5576 -1.1374 9 6 3.3287 -1.4114 -0.6186 10 7 3.3633 -1.4305 0.8499 11 6 3.4831 -2.8202 -1.1308 12 1 4.3049 -3.0697 -1.7856 13 6 2.5751 -3.7906 -0.7636 14 7 1.5745 -3.4869 0.0340 15 14 2.7660 -5.5368 -1.3991 16 1 3.9643 -5.6175 -2.2726 17 1 2.9268 -6.4663 -0.2521 18 1 1.5592 -5.9152 -2.1773 19 6 1.9980 -0.8656 -1.0727 20 1 -0.3633 -1.0153 0.1590 21 1 -0.3633 0.6454 0.7997 22 1 -0.3633 0.3699 -0.9588 23 1 1.7454 1.7716 -0.9591 24 1 1.4833 1.8723 0.7934 25 1 3.8037 2.3350 0.5246 26 1 3.7617 0.6216 1.0109 27 1 3.3620 2.4160 -2.3985 28 1 3.6338 0.8166 -3.1309 29 1 2.2681 1.0647 -2.0168 30 1 6.1406 1.4807 -0.3036 31 1 6.0177 1.4600 -2.0789 32 1 5.2966 2.7981 -1.1523 33 1 5.3855 -0.7725 -0.5418 34 1 4.6973 -0.8225 -2.1757 35 1 2.6272 -2.0120 1.2214 36 1 4.2659 -1.7307 1.1864 37 1 0.9355 -4.1696 0.2921 38 1 2.1307 -0.2830 -1.9843 39 1 1.3067 -1.6876 -1.2582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259517091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:14 Heat of formation + Delta-G solvation = 28.857324 kcal Electronic energy + Delta-G solvation = -17870.475181 eV Core-core repulsion = 15427.875984 eV Total energy + Delta-G solvation = -2442.599197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23622 -36.44323 -36.33779 -33.05003 -30.39524 -29.29122 -28.17046 -27.05289 -26.88868 -25.16179 -22.69563 -20.17239 -18.93371 -18.21520 -17.22016 -16.51566 -16.17313 -15.81366 -15.09445 -14.92958 -14.53201 -14.32104 -14.17443 -13.30320 -13.20964 -13.04687 -12.89558 -12.76448 -12.62346 -12.49287 -12.28282 -12.09667 -11.98182 -11.52112 -11.41316 -11.16358 -10.99196 -10.91810 -10.59443 -10.36162 -8.65466 -8.25582 -7.81771 -6.17333 1.36072 1.41724 1.49344 2.43655 3.17665 3.60914 4.10800 4.11993 4.20378 4.52468 4.58430 4.63038 4.69908 4.76315 4.83282 4.94118 4.94861 4.97279 5.01476 5.06721 5.17489 5.23092 5.24142 5.30501 5.41659 5.54242 5.59107 5.69578 5.77749 5.84721 6.05620 6.13725 6.38283 6.70940 6.86832 7.15191 7.40712 7.49847 7.72270 8.95853 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.011441 C = 0.009517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.476280 B = 2446.698307 C = 2941.412499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.534 5.534 3 C 0.074 3.926 4 C -0.108 4.108 5 C -0.057 4.057 6 C -0.164 4.164 7 C -0.132 4.132 8 C -0.081 4.081 9 C 0.238 3.762 10 N -0.805 5.805 11 C -0.565 4.565 12 H 0.033 0.967 13 C 0.034 3.966 14 N -0.886 5.886 15 Si 0.937 3.063 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.086 3.914 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.008 0.992 23 H 0.022 0.978 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.343 0.657 36 H 0.293 0.707 37 H 0.259 0.741 38 H 0.034 0.966 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 9.084 -0.900 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.258 5.258 3 C -0.055 4.055 4 C -0.146 4.146 5 C -0.057 4.057 6 C -0.220 4.220 7 C -0.189 4.189 8 C -0.119 4.119 9 C 0.145 3.855 10 N -0.333 5.333 11 C -0.606 4.606 12 H 0.052 0.948 13 C -0.168 4.168 14 N -0.525 5.525 15 Si 0.765 3.235 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.041 4.041 20 H 0.064 0.936 21 H 0.086 0.914 22 H 0.027 0.973 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.259 9.621 -0.464 9.714 hybrid contribution -0.087 -2.229 -1.319 2.592 sum 1.172 7.392 -1.783 7.693 Atomic orbital electron populations 1.22180 0.88593 1.00937 0.98689 1.58310 1.05350 1.12580 1.49537 1.21084 0.96514 0.89305 0.98647 1.21637 0.93572 1.00951 0.98471 1.20253 0.95582 0.94161 0.95688 1.22747 1.01299 1.00613 0.97372 1.21919 0.96289 0.99642 1.01082 1.21995 0.97865 0.93974 0.98087 1.18062 0.90658 0.89796 0.86952 1.59475 1.06021 1.59110 1.08651 1.22390 1.10781 0.97159 1.30245 0.94826 1.25469 0.94941 1.00976 0.95384 1.69888 1.14243 1.33510 1.34810 0.85859 0.77421 0.82197 0.78035 1.20497 1.21052 1.21090 1.22080 0.97803 0.93861 0.90366 0.93617 0.91354 0.97337 0.96087 0.92504 0.91895 0.88951 0.92023 0.94345 0.90704 0.92973 0.93415 0.91694 0.94409 0.95136 0.84112 0.89920 0.93143 0.94832 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.43 127.69 1.20 2.84 16 2 N -0.53 -21.71 3.31 -939.55 -3.11 -24.82 16 3 C 0.07 2.57 4.83 88.07 0.43 2.99 16 4 C -0.11 -3.68 4.99 30.35 0.15 -3.53 16 5 C -0.06 -1.92 0.72 -52.51 -0.04 -1.96 16 6 C -0.16 -5.33 6.47 71.98 0.47 -4.87 16 7 C -0.13 -3.68 7.96 71.98 0.57 -3.11 16 8 C -0.08 -3.34 3.92 31.27 0.12 -3.22 16 9 C 0.24 11.13 0.52 2.35 0.00 11.14 16 10 N -0.80 -37.22 5.38 -156.26 -0.84 -38.06 16 11 C -0.57 -30.00 8.04 25.60 0.21 -29.79 16 12 H 0.03 1.84 7.68 -2.91 -0.02 1.82 16 13 C 0.03 1.76 4.91 84.65 0.42 2.18 16 14 N -0.89 -47.02 9.74 21.45 0.21 -46.81 16 15 Si 0.94 42.94 29.54 68.60 2.03 44.97 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 C 0.09 3.93 4.27 85.45 0.36 4.29 16 20 H 0.04 1.89 8.07 -2.38 -0.02 1.87 16 21 H 0.07 2.20 7.86 -2.39 -0.02 2.18 16 22 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 23 H 0.02 0.73 4.97 -2.39 -0.01 0.71 16 24 H 0.06 1.84 7.81 -2.39 -0.02 1.82 16 25 H 0.06 1.82 7.68 -2.39 -0.02 1.81 16 26 H 0.09 3.60 5.66 -2.39 -0.01 3.58 16 27 H 0.06 1.69 7.94 -2.38 -0.02 1.67 16 28 H 0.04 1.27 7.66 -2.39 -0.02 1.25 16 29 H 0.07 2.66 2.68 -2.39 -0.01 2.66 16 30 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.55 8.02 -2.39 -0.02 1.53 16 33 H 0.04 1.56 7.75 -2.39 -0.02 1.54 16 34 H 0.03 1.30 7.44 -2.39 -0.02 1.28 16 35 H 0.34 17.60 6.72 -89.70 -0.60 17.00 16 36 H 0.29 13.38 8.78 -89.69 -0.79 12.59 16 37 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 38 H 0.03 1.50 4.00 -2.39 -0.01 1.49 16 39 H 0.05 2.73 5.59 -2.39 -0.01 2.72 16 Total: -1.00 -53.16 274.40 1.83 -51.32 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.34 Total: 36.41 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.89 Total: -23.02 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.74 Total: -109.68 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -53.16 1.83 -51.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259517091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.181 kcal (2) G-P(sol) polarization free energy of solvation -53.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds