Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47312 * 2 1 4 4 C 1.42898 * 113.99874 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47259 * 30.00319 * 4 3 2 6 6 C 1.52997 * 109.47319 * 270.00076 * 4 3 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47224 * 300.00294 * 7 6 4 9 9 C 1.52997 * 109.47482 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47106 * 60.00162 * 7 6 4 11 11 C 1.53002 * 109.47128 * 300.00123 * 10 7 6 12 12 C 1.52997 * 109.46978 * 59.99726 * 11 10 7 13 13 H 1.09002 * 109.47497 * 60.00450 * 12 11 10 14 14 C 1.50703 * 109.47084 * 180.02562 * 12 11 10 15 15 H 1.08003 * 119.99742 * 120.00045 * 14 12 11 16 16 C 1.37874 * 120.00228 * 299.99946 * 14 12 11 17 17 N 1.31522 * 119.99813 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00075 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47248 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47285 * 120.00495 * 18 16 14 21 21 H 1.48500 * 109.46790 * 240.00173 * 18 16 14 22 22 H 1.09004 * 109.46662 * 299.99956 * 1 2 3 23 23 H 1.08997 * 109.47257 * 59.99492 * 1 2 3 24 24 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47156 * 239.99911 * 2 1 3 26 26 H 1.08997 * 109.47257 * 120.00508 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00307 * 6 4 3 28 28 H 1.08998 * 109.47533 * 59.99936 * 6 4 3 29 29 H 1.09004 * 109.47298 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.46993 * 299.99360 * 8 7 6 31 31 H 1.09004 * 109.47552 * 59.99646 * 8 7 6 32 32 H 1.09002 * 109.47153 * 300.00216 * 9 7 6 33 33 H 1.09001 * 109.47289 * 60.00300 * 9 7 6 34 34 H 1.09004 * 109.47261 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47407 * 180.02562 * 10 7 6 36 36 H 1.09002 * 109.47596 * 60.00070 * 10 7 6 37 37 H 1.09002 * 109.47097 * 299.99925 * 11 10 7 38 38 H 1.08998 * 109.47844 * 180.02562 * 11 10 7 39 39 H 0.96998 * 119.99750 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9388 1.5005 1.4432 7 6 5.4639 1.6218 1.4439 8 6 6.0717 0.4171 0.7229 9 6 5.9717 1.6629 2.8866 10 6 5.8735 2.9076 0.7229 11 6 5.3657 2.8673 -0.7198 12 6 3.8405 2.7458 -0.7204 13 1 3.4074 3.6042 -0.2068 14 6 3.3404 2.7054 -2.1415 15 1 2.7859 1.8485 -2.4946 16 6 3.5907 3.7623 -2.9908 17 7 4.2664 4.8056 -2.5609 18 14 2.9701 3.7125 -4.7519 19 1 2.2442 2.4383 -4.9851 20 1 2.0519 4.8559 -4.9858 21 1 4.1216 3.8035 -5.6852 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.5061 2.3591 1.9568 28 1 3.6466 0.5847 1.9572 29 1 7.1583 0.5038 0.7229 30 1 5.7800 -0.4990 1.2366 31 1 5.7099 0.3882 -0.3050 32 1 5.5386 2.5215 3.3999 33 1 5.6799 0.7471 3.4007 34 1 7.0582 1.7498 2.8870 35 1 6.9600 2.9939 0.7229 36 1 5.4405 3.7660 1.2365 37 1 5.7987 2.0089 -1.2335 38 1 5.6578 3.7830 -1.2337 39 1 4.4428 5.5490 -3.1585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776830.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -96.341793 kcal Electronic energy + Delta-G solvation = -17042.292190 eV Core-core repulsion = 14561.971200 eV Total energy + Delta-G solvation = -2480.320989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66692 -37.98114 -35.51944 -32.98988 -31.96966 -30.08526 -28.42117 -28.12620 -25.32286 -23.79935 -22.89937 -21.58309 -19.21493 -18.40201 -17.48625 -16.66219 -16.37705 -15.79149 -15.25914 -15.04652 -14.76563 -14.28825 -14.03369 -13.60728 -13.34868 -13.10740 -12.95307 -12.87388 -12.81333 -12.58242 -12.52898 -12.33078 -12.17724 -11.86102 -11.72288 -11.60580 -11.32153 -11.05953 -10.91180 -10.58187 -10.33924 -9.96703 -8.04267 -6.15754 1.37783 1.39587 1.50944 2.44584 3.01245 3.24662 3.90913 3.99843 4.05263 4.21434 4.28828 4.49830 4.53937 4.55049 4.66839 4.71005 4.77648 4.84777 4.90103 4.91526 4.98449 5.03505 5.08079 5.11061 5.24969 5.26045 5.29139 5.37883 5.40676 5.44548 5.60958 5.67868 5.73865 5.98366 6.15200 6.43806 6.72951 6.93511 7.49743 8.99884 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.011366 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.061381 B = 2462.931789 C = 3538.384916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.105 3.895 5 H 0.048 0.952 6 C -0.119 4.119 7 C -0.059 4.059 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.103 4.103 11 C -0.100 4.100 12 C 0.053 3.947 13 H -0.014 1.014 14 C -0.513 4.513 15 H 0.043 0.957 16 C 0.010 3.990 17 N -0.918 5.918 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.278 1.278 22 H 0.060 0.940 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -9.758 8.229 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.048 3.952 5 H 0.066 0.934 6 C -0.156 4.156 7 C -0.059 4.059 8 C -0.197 4.197 9 C -0.189 4.189 10 C -0.141 4.141 11 C -0.138 4.138 12 C 0.034 3.966 13 H 0.004 0.996 14 C -0.551 4.551 15 H 0.062 0.938 16 C -0.188 4.188 17 N -0.559 5.559 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.203 1.203 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.996 -9.439 8.168 12.522 hybrid contribution -0.305 0.366 -1.230 1.319 sum 0.691 -9.074 6.937 11.443 Atomic orbital electron populations 1.21725 0.92929 1.03165 1.02246 1.22611 0.96458 0.84097 0.99652 1.87946 1.22500 1.26789 1.95027 1.22200 0.79591 0.98592 0.94787 0.93409 1.22014 0.95816 1.01315 0.96493 1.20482 0.93653 0.95365 0.96424 1.21927 1.00808 0.97006 1.00003 1.21799 1.01261 1.01957 0.93883 1.21629 0.99739 0.96743 0.95968 1.21417 0.96233 1.01019 0.95153 1.18672 0.93021 0.91341 0.93532 0.99600 1.21423 1.33413 1.03029 0.97254 0.93848 1.25678 0.95683 0.95295 1.02125 1.70028 1.41520 1.07733 1.36610 0.85649 0.78167 0.77879 0.80837 1.19533 1.20910 1.20332 0.92058 0.93470 0.88662 0.94578 0.92546 0.93339 0.91153 0.91780 0.91539 0.93782 0.93154 0.91485 0.91643 0.91867 0.94143 0.94364 0.92251 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 10.28 71.98 0.74 -3.24 16 2 C 0.05 1.61 6.47 71.98 0.47 2.08 16 3 O -0.40 -17.81 9.57 -148.98 -1.43 -19.24 16 4 C 0.11 4.57 1.71 30.59 0.05 4.62 16 5 H 0.05 2.04 6.08 -2.39 -0.01 2.03 16 6 C -0.12 -4.21 4.35 30.59 0.13 -4.08 16 7 C -0.06 -1.87 0.77 -52.19 -0.04 -1.91 16 8 C -0.14 -4.04 7.78 71.98 0.56 -3.48 16 9 C -0.13 -3.25 8.47 71.98 0.61 -2.64 16 10 C -0.10 -3.93 4.73 30.60 0.14 -3.79 16 11 C -0.10 -4.79 4.70 30.59 0.14 -4.64 16 12 C 0.05 2.77 1.85 -11.54 -0.02 2.75 16 13 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 14 C -0.51 -29.66 8.22 25.60 0.21 -29.45 16 15 H 0.04 2.53 7.70 -2.91 -0.02 2.51 16 16 C 0.01 0.56 5.30 84.65 0.45 1.01 16 17 N -0.92 -54.80 11.32 21.45 0.24 -54.55 16 18 Si 0.95 45.55 29.54 68.60 2.03 47.57 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.21 8.09 -2.39 -0.02 1.19 16 26 H 0.06 1.61 7.87 -2.39 -0.02 1.59 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 29 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.48 4.81 -2.39 -0.01 1.46 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.42 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.78 6.43 -2.39 -0.02 1.76 16 38 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 39 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -64.44 297.31 5.27 -59.17 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.98 Total: 9.80 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 3.45 Total: -42.76 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.24 Total: -54.55 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.43 Total: -19.24 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -64.44 5.27 -59.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776830.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.170 kcal (2) G-P(sol) polarization free energy of solvation -64.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds