Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 O 1.42894 * 109.47562 * 119.99869 * 2 1 3 5 5 C 1.42902 * 114.00029 * 132.15804 * 4 2 1 6 6 C 1.50696 * 108.87014 * 52.71320 * 5 4 2 7 7 H 1.08005 * 119.99493 * 242.20560 * 6 5 4 8 8 C 1.37878 * 120.00188 * 62.21685 * 6 5 4 9 9 N 1.31517 * 119.99787 * 176.60719 * 8 6 5 10 10 Si 1.86798 * 119.99933 * 356.60292 * 8 6 5 11 11 H 1.48501 * 109.46971 * 95.35999 * 10 8 6 12 12 H 1.48493 * 109.47010 * 215.35864 * 10 8 6 13 13 H 1.48491 * 109.47307 * 335.36200 * 10 8 6 14 14 C 1.45539 * 108.89608 * 294.10866 * 5 4 2 15 15 C 1.54250 * 112.32480 * 301.22846 * 14 5 4 16 16 C 1.50548 * 108.48614 * 279.88069 * 15 14 5 17 17 C 1.54070 * 112.41586 * 94.26576 * 16 15 14 18 18 C 1.54071 * 112.81493 * 318.28637 * 17 16 15 19 19 C 1.50470 * 112.49206 * 318.27634 * 18 17 16 20 20 H 1.08995 * 109.47368 * 299.99457 * 1 2 3 21 21 H 1.09003 * 109.47259 * 60.00441 * 1 2 3 22 22 H 1.09005 * 109.46591 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47676 * 240.00505 * 2 1 3 24 24 H 1.09006 * 109.47205 * 181.96040 * 3 2 1 25 25 H 1.08995 * 109.46912 * 301.95659 * 3 2 1 26 26 H 1.09000 * 109.46952 * 61.95954 * 3 2 1 27 27 H 0.96997 * 119.99707 * 179.97438 * 9 8 6 28 28 H 1.08997 * 108.89633 * 61.93515 * 14 5 4 29 29 H 1.09003 * 108.89672 * 180.52915 * 14 5 4 30 30 H 1.08991 * 109.62779 * 39.68465 * 15 14 5 31 31 H 1.09007 * 109.62550 * 160.25818 * 15 14 5 32 32 H 1.09009 * 108.92195 * 333.51776 * 16 15 14 33 33 H 1.08995 * 108.84151 * 214.96485 * 16 15 14 34 34 H 1.08994 * 108.81725 * 197.41586 * 17 16 15 35 35 H 1.09002 * 108.80741 * 79.13968 * 17 16 15 36 36 H 1.09004 * 108.87190 * 197.50268 * 18 17 16 37 37 H 1.08996 * 108.87815 * 79.05897 * 18 17 16 38 38 H 1.08999 * 109.63237 * 334.44679 * 19 18 17 39 39 H 1.09005 * 109.78890 * 213.95973 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.0262 -1.6396 0.9044 6 6 4.1262 -0.9837 0.1102 7 1 4.3590 -1.3369 -0.8835 8 6 4.8354 0.0672 0.6522 9 7 5.8389 0.5960 -0.0135 10 14 4.3710 0.7398 2.3318 11 1 5.2197 0.1041 3.3715 12 1 4.5813 2.2096 2.3518 13 1 2.9430 0.4403 2.6074 14 6 2.4577 -2.7232 0.1165 15 6 1.2761 -3.4101 0.8316 16 6 1.8282 -4.3762 1.8456 17 6 1.9415 -3.7530 3.2500 18 6 2.4735 -2.3073 3.2210 19 6 3.6064 -2.1303 2.2467 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 3.1294 1.4428 -0.0352 25 1 1.6482 1.9664 -0.8719 26 1 1.7055 1.9461 0.9070 27 1 6.3376 1.3355 0.3676 28 1 2.1095 -2.3224 -0.8354 29 1 3.2333 -3.4646 -0.0755 30 1 0.6654 -2.6595 1.3331 31 1 0.6717 -3.9508 0.1032 32 1 2.8177 -4.7003 1.5228 33 1 1.1724 -5.2453 1.8973 34 1 2.6144 -4.3633 3.8522 35 1 0.9561 -3.7556 3.7161 36 1 2.8212 -2.0395 4.2187 37 1 1.6601 -1.6378 2.9415 38 1 4.1149 -3.0831 2.0994 39 1 4.3124 -1.3942 2.6314 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = -53.089314 kcal Electronic energy + Delta-G solvation = -17955.288315 eV Core-core repulsion = 15476.842894 eV Total energy + Delta-G solvation = -2478.445421 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.32084 -35.87491 -32.90590 -31.80386 -31.51366 -29.73169 -26.57904 -25.56427 -24.29628 -22.42419 -20.65362 -18.79611 -18.68139 -16.74630 -15.75456 -15.18735 -14.47096 -14.35767 -13.70946 -13.28596 -13.06965 -12.74496 -12.52183 -12.35138 -11.93961 -11.69853 -11.57068 -11.40554 -11.19971 -10.76068 -10.59394 -10.42612 -10.24296 -10.11579 -9.87100 -9.75962 -9.55476 -9.50318 -9.27585 -8.54895 -8.50224 -7.83414 -6.09791 -4.17283 3.38804 3.51283 3.75512 4.52202 4.88671 5.27615 5.32791 5.39019 5.46890 5.79949 5.88047 5.94765 5.98376 6.00891 6.12935 6.18108 6.24684 6.26738 6.34194 6.41885 6.50591 6.51658 6.64845 6.66620 6.69333 6.73214 6.85315 6.89118 7.00711 7.06436 7.19277 7.30179 7.38924 7.56334 7.71970 8.29727 8.79902 8.93391 9.55765 11.00056 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.015076 C = 0.012221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.511936 B = 1856.871418 C = 2290.602757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 C -0.169 4.169 4 O -0.385 6.385 5 C 0.205 3.795 6 C -0.547 4.547 7 H 0.071 0.929 8 C 0.087 3.913 9 N -0.893 5.893 10 Si 0.866 3.134 11 H -0.296 1.296 12 H -0.307 1.307 13 H -0.207 1.207 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.098 4.098 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 -4.910 3.101 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 C -0.227 4.227 4 O -0.306 6.306 5 C 0.168 3.832 6 C -0.584 4.584 7 H 0.089 0.911 8 C -0.116 4.116 9 N -0.530 5.530 10 Si 0.696 3.304 11 H -0.225 1.225 12 H -0.236 1.236 13 H -0.129 1.129 14 C -0.155 4.155 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.164 4.164 19 C -0.135 4.135 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.093 -4.763 3.269 10.773 hybrid contribution 0.279 0.464 0.568 0.785 sum -8.813 -4.299 3.837 10.530 Atomic orbital electron populations 1.22071 0.97181 1.01146 1.00783 1.21437 0.90831 0.92615 0.90977 1.22326 1.04020 0.96892 0.99442 1.87915 1.56618 1.55061 1.31040 1.18102 0.86538 0.86525 0.92050 1.21440 1.16896 1.16972 1.03081 0.91056 1.24979 0.93354 0.95799 0.97505 1.69969 1.19527 1.24720 1.38776 0.87449 0.82867 0.76153 0.83970 1.22496 1.23567 1.12946 1.20946 0.96638 0.98779 0.99092 1.21355 0.98535 0.98331 0.97430 1.21328 1.00746 0.97714 0.95334 1.21867 0.99760 0.96706 0.96404 1.21412 1.00502 0.96114 0.98384 1.21478 0.96524 1.00302 0.95176 0.93101 0.92953 0.93011 0.91496 0.90067 0.93836 0.94010 0.92761 0.92754 0.92417 0.90892 0.93581 0.92301 0.93601 0.93389 0.93303 0.94126 0.89784 0.91977 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.56 37.16 0.36 -2.18 16 2 C 0.10 2.02 2.37 -26.73 -0.06 1.95 16 3 C -0.17 -3.55 8.07 37.16 0.30 -3.25 16 4 O -0.39 -8.39 3.71 -35.23 -0.13 -8.52 16 5 C 0.21 4.57 0.26 -94.64 -0.02 4.55 16 6 C -0.55 -14.59 6.85 -34.44 -0.24 -14.82 16 7 H 0.07 2.09 7.96 -52.48 -0.42 1.67 16 8 C 0.09 2.43 3.78 -17.82 -0.07 2.37 16 9 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 10 Si 0.87 21.98 21.38 -169.99 -3.63 18.35 16 11 H -0.30 -7.58 6.88 56.52 0.39 -7.19 16 12 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 13 H -0.21 -5.01 5.00 56.52 0.28 -4.73 16 14 C -0.12 -2.30 3.73 -29.59 -0.11 -2.41 16 15 C -0.12 -1.97 5.57 -27.30 -0.15 -2.12 16 16 C -0.11 -1.74 5.32 -27.40 -0.15 -1.88 16 17 C -0.11 -1.70 5.85 -25.61 -0.15 -1.85 16 18 C -0.13 -2.36 5.07 -27.44 -0.14 -2.50 16 19 C -0.10 -2.10 3.98 -27.34 -0.11 -2.21 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.80 7.94 -51.93 -0.41 0.39 16 23 H 0.07 1.44 5.55 -51.93 -0.29 1.15 16 24 H 0.08 1.99 4.54 -51.93 -0.24 1.75 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.84 8.12 -51.93 -0.42 0.41 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.05 1.08 6.36 -51.93 -0.33 0.75 16 29 H 0.06 1.14 7.46 -51.93 -0.39 0.76 16 30 H 0.07 1.27 6.03 -51.93 -0.31 0.95 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.06 0.93 6.63 -51.92 -0.34 0.59 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.66 5.46 -51.93 -0.28 1.38 16 38 H 0.06 1.28 6.98 -51.93 -0.36 0.91 16 39 H 0.05 1.31 3.38 -51.93 -0.18 1.14 16 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -28.43 268.31 -6.11 -34.54 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.62 Total: 1.89 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -0.54 Total: -24.34 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.13 Total: -8.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -3.63 Total: 18.35 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.43 -6.11 -34.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.550 kcal (2) G-P(sol) polarization free energy of solvation -28.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds