Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00550 * 2 1 4 4 C 1.52996 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46613 * 303.16411 * 4 3 2 6 6 C 1.50701 * 109.47561 * 63.16540 * 4 3 2 7 7 H 1.07999 * 119.99867 * 240.00265 * 6 4 3 8 8 C 1.37880 * 119.99763 * 60.00240 * 6 4 3 9 9 N 1.31519 * 119.99933 * 0.02562 * 8 6 4 10 10 Si 1.86792 * 119.99826 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47425 * 59.99664 * 10 8 6 12 12 H 1.48502 * 109.47474 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47353 * 299.99721 * 10 8 6 14 14 C 1.53004 * 109.46983 * 183.16878 * 4 3 2 15 15 C 1.54234 * 109.62716 * 185.39526 * 14 4 3 16 16 C 1.45542 * 112.40752 * 160.30034 * 15 14 4 17 17 C 1.54251 * 112.40277 * 61.93751 * 16 15 14 18 18 C 1.50470 * 108.67916 * 279.91538 * 17 16 15 19 19 C 1.54260 * 112.38934 * 93.93734 * 18 17 16 20 20 C 1.50474 * 109.62671 * 66.36404 * 14 4 3 21 21 H 1.09001 * 109.47194 * 300.00165 * 1 2 3 22 22 H 1.09006 * 109.46937 * 59.99622 * 1 2 3 23 23 H 1.08999 * 109.47974 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46969 * 59.99657 * 3 2 1 25 25 H 1.09006 * 109.46593 * 299.99734 * 3 2 1 26 26 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 27 27 H 1.08993 * 109.78135 * 305.87897 * 14 4 3 28 28 H 1.08998 * 108.90102 * 39.54726 * 15 14 4 29 29 H 1.09004 * 108.89965 * 281.05606 * 15 14 4 30 30 H 1.08991 * 108.89787 * 301.18456 * 16 15 14 31 31 H 1.09003 * 108.89811 * 182.68961 * 16 15 14 32 32 H 1.09002 * 109.63052 * 39.72090 * 17 16 15 33 33 H 1.08994 * 109.62675 * 160.10555 * 17 16 15 34 34 H 1.08999 * 108.87564 * 215.03168 * 18 17 16 35 35 H 1.09003 * 108.87715 * 333.46935 * 18 17 16 36 36 H 1.08997 * 108.83423 * 197.61422 * 19 18 17 37 37 H 1.08999 * 108.65960 * 79.41300 * 19 18 17 38 38 H 1.08994 * 108.88116 * 334.63545 * 20 14 4 39 39 H 1.09000 * 108.87817 * 93.08421 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8535 0.5952 0.8594 6 6 3.9851 0.5056 -1.2687 7 1 4.5344 -0.4229 -1.2186 8 6 3.6953 1.0701 -2.4929 9 7 3.0269 2.2011 -2.5538 10 14 4.2520 0.2283 -4.0647 11 1 3.6476 -1.1260 -4.1419 12 1 3.8183 1.0309 -5.2365 13 1 5.7324 0.1104 -4.0656 14 6 4.1577 2.5800 0.0791 15 6 5.6902 2.4725 -0.0576 16 6 6.3024 3.7343 -0.4467 17 6 6.0749 4.8452 0.5990 18 6 4.6922 5.4082 0.4110 19 6 3.6513 4.7267 1.3230 20 6 3.8390 3.2001 1.4126 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 1.6887 1.8463 0.8900 25 1 1.6887 1.8463 -0.8901 26 1 2.8227 2.5979 -3.4150 27 1 3.7619 3.2066 -0.7201 28 1 5.9257 1.7193 -0.8095 29 1 6.1087 2.1571 0.8982 30 1 5.8785 4.0535 -1.3987 31 1 7.3744 3.5825 -0.5729 32 1 6.1673 4.4285 1.6020 33 1 6.8136 5.6347 0.4611 34 1 4.7138 6.4761 0.6279 35 1 4.3922 5.2672 -0.6274 36 1 2.6540 4.9361 0.9364 37 1 3.7341 5.1503 2.3239 38 1 2.9225 2.7542 1.7989 39 1 4.6527 2.9848 2.1051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = -73.373583 kcal Electronic energy + Delta-G solvation = -17196.387335 eV Core-core repulsion = 14717.062322 eV Total energy + Delta-G solvation = -2479.325013 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.50366 -36.55102 -33.92896 -31.73834 -31.27895 -28.46396 -25.90719 -24.78132 -23.47822 -23.36084 -20.21969 -19.51926 -18.19292 -16.14948 -15.25950 -14.93918 -14.53398 -14.25560 -13.97708 -13.85417 -13.65049 -12.87933 -12.61167 -12.16981 -11.73082 -11.58781 -11.29308 -11.09574 -10.85504 -10.76025 -10.51347 -10.31694 -10.03338 -10.01135 -9.75904 -9.54764 -9.31851 -9.14069 -9.03310 -8.53496 -8.48930 -8.07058 -5.87291 -3.91724 3.37275 3.41070 3.45825 4.51761 5.02118 5.33103 5.37597 5.46678 5.47922 5.90161 5.96824 5.98939 6.03140 6.09482 6.15027 6.27728 6.27941 6.32867 6.45577 6.46500 6.60584 6.77949 6.80427 6.86539 6.91835 6.94893 7.08492 7.17047 7.20953 7.38501 7.57792 7.64646 7.77707 7.94340 8.20318 8.46827 8.62426 9.02343 9.70835 11.13665 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.012302 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.103294 B = 2275.496609 C = 3186.927946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.382 6.382 3 C 0.065 3.935 4 C 0.053 3.947 5 H 0.017 0.983 6 C -0.486 4.486 7 H 0.051 0.949 8 C 0.067 3.933 9 N -0.892 5.892 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.279 1.279 14 C -0.071 4.071 15 C -0.103 4.103 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.118 4.118 21 H 0.022 0.978 22 H 0.030 0.970 23 H 0.067 0.933 24 H 0.003 0.997 25 H 0.082 0.918 26 H 0.258 0.742 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 4.463 4.978 6.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.301 6.301 3 C -0.011 4.011 4 C 0.034 3.966 5 H 0.036 0.964 6 C -0.524 4.524 7 H 0.069 0.931 8 C -0.132 4.132 9 N -0.532 5.532 10 Si 0.712 3.288 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.205 1.205 14 C -0.090 4.090 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.156 4.156 21 H 0.041 0.959 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.021 0.979 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.661 4.426 4.831 6.586 hybrid contribution -0.042 -0.165 -0.886 0.902 sum 0.619 4.261 3.946 5.840 Atomic orbital electron populations 1.22504 0.84406 1.00632 0.98559 1.87900 1.16553 1.30538 1.95121 1.22924 0.97176 0.82419 0.98623 1.18707 0.89254 0.92861 0.95744 0.96417 1.20931 1.33991 1.07043 0.90460 0.93101 1.24817 0.95130 0.94828 0.98469 1.69738 1.40613 1.18333 1.24532 0.86789 0.78993 0.79713 0.83279 1.20475 1.21540 1.20454 1.20818 0.93924 0.98612 0.95649 1.20382 0.96411 0.96828 1.00437 1.20476 0.99045 0.96403 0.98679 1.21321 0.96225 0.97830 0.99782 1.21318 0.95101 0.97752 1.01094 1.21880 0.98442 0.96440 0.97969 1.21630 1.00345 0.93792 0.99787 0.95943 0.95098 0.91402 0.97933 0.89984 0.93220 0.87694 0.90442 0.95086 0.92239 0.94135 0.92330 0.93433 0.93773 0.91533 0.92940 0.93975 0.93039 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.01 101.05 1.11 1.80 16 2 O -0.38 -9.26 10.41 -35.23 -0.37 -9.62 16 3 C 0.06 1.56 5.01 37.16 0.19 1.75 16 4 C 0.05 1.31 1.86 -91.77 -0.17 1.14 16 5 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 6 C -0.49 -13.11 6.66 -34.44 -0.23 -13.34 16 7 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 8 C 0.07 1.80 5.14 -17.82 -0.09 1.71 16 9 N -0.89 -23.89 9.41 55.43 0.52 -23.37 16 10 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C -0.07 -1.56 1.13 -91.23 -0.10 -1.67 16 15 C -0.10 -2.14 4.60 -29.60 -0.14 -2.28 16 16 C -0.11 -1.98 5.26 -29.59 -0.16 -2.13 16 17 C -0.11 -1.81 5.59 -27.34 -0.15 -1.97 16 18 C -0.12 -1.87 5.34 -27.34 -0.15 -2.02 16 19 C -0.11 -1.84 5.85 -25.51 -0.15 -1.99 16 20 C -0.12 -2.24 4.76 -27.43 -0.13 -2.38 16 21 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.00 0.06 6.27 -51.93 -0.33 -0.26 16 25 H 0.08 2.16 5.99 -51.93 -0.31 1.85 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.11 2.55 5.12 -51.93 -0.27 2.29 16 28 H 0.08 1.80 6.42 -51.93 -0.33 1.47 16 29 H 0.03 0.60 7.47 -51.93 -0.39 0.22 16 30 H 0.06 1.17 7.48 -51.93 -0.39 0.78 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.92 6.98 -51.93 -0.36 0.56 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.21 6.65 -51.93 -0.35 0.86 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 1.00 5.83 -51.93 -0.30 0.70 16 39 H 0.04 0.78 6.63 -51.93 -0.34 0.44 16 LS Contribution 287.15 15.07 4.33 4.33 Total: -1.00 -27.07 287.15 -7.42 -34.49 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.72 Total: -0.73 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.17 Total: -21.35 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.52 Total: -23.37 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.37 Total: -9.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.07 -7.42 -34.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.884 kcal (2) G-P(sol) polarization free energy of solvation -27.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds