Wall clock time and date at job start Mon Mar 30 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99904 * 2 1 4 4 C 1.52999 * 109.46779 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47170 * 302.88388 * 4 3 2 6 6 C 1.50703 * 109.47255 * 182.88685 * 4 3 2 7 7 H 1.07996 * 120.00033 * 239.99975 * 6 4 3 8 8 C 1.37879 * 119.99842 * 59.99581 * 6 4 3 9 9 N 1.31515 * 120.00274 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 119.99906 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46907 * 89.99831 * 10 8 6 12 12 H 1.48498 * 109.47162 * 210.00088 * 10 8 6 13 13 H 1.48505 * 109.46763 * 330.00146 * 10 8 6 14 14 C 1.53002 * 109.47431 * 62.88622 * 4 3 2 15 15 C 1.54240 * 108.89827 * 186.05572 * 14 4 3 16 16 C 1.50553 * 108.48590 * 159.17691 * 15 14 4 17 17 C 1.54067 * 112.41234 * 94.26798 * 16 15 14 18 18 C 1.54069 * 112.81662 * 318.27381 * 17 16 15 19 19 C 1.50473 * 112.49779 * 318.29119 * 18 17 16 20 20 C 1.45540 * 108.89323 * 63.26082 * 14 4 3 21 21 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46692 * 299.99942 * 1 2 3 23 23 H 1.09000 * 109.46662 * 59.99928 * 1 2 3 24 24 H 1.08995 * 109.47154 * 299.99837 * 3 2 1 25 25 H 1.09001 * 109.47281 * 60.00170 * 3 2 1 26 26 H 0.96998 * 120.00055 * 179.97438 * 9 8 6 27 27 H 1.09004 * 108.86995 * 304.65485 * 14 4 3 28 28 H 1.09002 * 109.62975 * 278.97380 * 15 14 4 29 29 H 1.09007 * 109.62631 * 39.54918 * 15 14 4 30 30 H 1.08994 * 108.92022 * 333.50685 * 16 15 14 31 31 H 1.09001 * 108.83663 * 214.96475 * 16 15 14 32 32 H 1.09000 * 108.80777 * 197.41863 * 17 16 15 33 33 H 1.08997 * 108.73116 * 79.08145 * 17 16 15 34 34 H 1.08995 * 108.87506 * 197.51171 * 18 17 16 35 35 H 1.09004 * 108.79308 * 79.01266 * 18 17 16 36 36 H 1.08998 * 109.62929 * 334.44250 * 19 18 17 37 37 H 1.08990 * 109.62909 * 213.85724 * 19 18 17 38 38 H 1.08996 * 108.89638 * 303.44056 * 20 14 4 39 39 H 1.09000 * 108.89653 * 61.93890 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8539 0.5995 0.8622 6 6 4.1484 2.5595 0.0709 7 1 4.7981 2.9029 -0.7204 8 6 3.8796 3.3789 1.1467 9 7 3.0887 2.9606 2.1106 10 14 4.6388 5.0834 1.2351 11 1 3.7345 6.0626 0.5803 12 1 4.8353 5.4647 2.6567 13 1 5.9502 5.0779 0.5382 14 6 3.9915 0.4891 -1.2849 15 6 5.5110 0.2371 -1.2040 16 6 5.8652 -0.8595 -2.1729 17 6 6.3199 -0.3118 -3.5393 18 6 5.4611 0.8719 -4.0243 19 6 3.9931 0.6601 -3.7708 20 6 3.6284 1.3185 -2.4244 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6887 1.8463 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 2.8999 3.5370 2.8676 27 1 3.4787 -0.4692 -1.3681 28 1 6.0479 1.1484 -1.4676 29 1 5.7781 -0.0689 -0.1924 30 1 4.9929 -1.4960 -2.3206 31 1 6.6704 -1.4585 -1.7474 32 1 6.2621 -1.1131 -4.2759 33 1 7.3562 0.0159 -3.4578 34 1 5.6184 1.0065 -5.0944 35 1 5.7821 1.7747 -3.5047 36 1 3.7796 -0.4078 -3.7258 37 1 3.4133 1.1189 -4.5716 38 1 2.5541 1.5008 -2.4002 39 1 4.1485 2.2732 -2.3461 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:46 Heat of formation + Delta-G solvation = -78.413143 kcal Electronic energy + Delta-G solvation = -17000.518175 eV Core-core repulsion = 14520.974631 eV Total energy + Delta-G solvation = -2479.543545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.78873 -36.60846 -34.03307 -31.87443 -31.44761 -28.41213 -26.08023 -24.39324 -23.96556 -23.55037 -20.79594 -18.89861 -18.69065 -16.15895 -15.37267 -15.18339 -14.58719 -14.38616 -14.04301 -13.97088 -13.47470 -13.17163 -12.48778 -12.36186 -11.85575 -11.62281 -11.47665 -11.24246 -11.03840 -10.68144 -10.63680 -10.41364 -10.16419 -10.09877 -9.94421 -9.77712 -9.68743 -9.27156 -8.78952 -8.65820 -8.61373 -8.13763 -6.00668 -4.06628 3.28799 3.36430 3.39227 4.41516 4.93115 5.20299 5.30301 5.34549 5.37122 5.74881 5.86824 5.89366 5.95073 5.98603 6.05540 6.14420 6.19605 6.20829 6.22563 6.34516 6.60719 6.66798 6.67547 6.72931 6.83230 6.86238 7.02042 7.10200 7.13171 7.28126 7.44097 7.44726 7.65384 7.89493 8.05160 8.27974 8.57113 8.98483 9.57818 11.04626 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.011214 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.522392 B = 2496.179342 C = 3435.654311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.404 6.404 3 C 0.058 3.942 4 C 0.057 3.943 5 H 0.032 0.968 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.059 3.941 9 N -0.891 5.891 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.071 4.071 15 C -0.100 4.100 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.104 4.104 21 H 0.067 0.933 22 H 0.031 0.969 23 H 0.026 0.974 24 H 0.022 0.978 25 H 0.079 0.921 26 H 0.260 0.740 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -4.386 -8.139 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.323 6.323 3 C -0.018 4.018 4 C 0.039 3.961 5 H 0.050 0.950 6 C -0.541 4.541 7 H 0.082 0.918 8 C -0.142 4.142 9 N -0.530 5.530 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.089 4.089 15 C -0.137 4.137 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.141 4.141 21 H 0.085 0.915 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.836 -4.482 -7.962 9.175 hybrid contribution 0.052 1.278 0.156 1.288 sum 0.887 -3.204 -7.806 8.485 Atomic orbital electron populations 1.22494 0.84031 1.00565 0.98895 1.87825 1.17232 1.31912 1.95345 1.23188 0.96859 0.81545 1.00163 1.18790 0.89082 0.95628 0.92627 0.95014 1.21181 1.28015 0.99238 1.05644 0.91839 1.25050 0.95215 0.98307 0.95659 1.69885 1.36613 1.36589 1.09881 0.86646 0.79758 0.84771 0.77183 1.20801 1.21312 1.19832 1.19957 0.94151 0.98139 0.96694 1.21251 0.97121 0.97574 0.97766 1.21429 1.00259 0.98855 0.95014 1.21879 0.98788 0.97445 0.96856 1.21322 0.95822 0.98838 0.99320 1.21385 0.95301 1.00731 0.98258 1.20563 1.00999 0.99869 0.92709 0.91455 0.95052 0.95583 0.96016 0.90255 0.92983 0.93363 0.91988 0.92469 0.92562 0.93475 0.93361 0.93034 0.93589 0.91867 0.92456 0.93271 0.93015 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.01 101.05 1.11 1.79 16 2 O -0.40 -9.16 10.05 -35.23 -0.35 -9.51 16 3 C 0.06 1.41 4.90 37.16 0.18 1.60 16 4 C 0.06 1.42 1.74 -91.77 -0.16 1.26 16 5 H 0.03 0.88 8.00 -51.93 -0.42 0.47 16 6 C -0.50 -13.16 7.30 -34.44 -0.25 -13.41 16 7 H 0.06 1.63 5.97 -52.49 -0.31 1.32 16 8 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 9 N -0.89 -25.15 11.30 55.43 0.63 -24.52 16 10 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 C -0.07 -1.48 1.45 -93.49 -0.14 -1.61 16 15 C -0.10 -1.90 4.46 -27.31 -0.12 -2.02 16 16 C -0.12 -1.87 5.32 -27.40 -0.15 -2.02 16 17 C -0.11 -1.59 5.85 -25.62 -0.15 -1.74 16 18 C -0.12 -1.71 5.32 -27.44 -0.15 -1.86 16 19 C -0.12 -1.90 5.61 -27.34 -0.15 -2.06 16 20 C -0.10 -2.02 4.09 -29.60 -0.12 -2.14 16 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.52 6.24 -51.93 -0.32 0.19 16 25 H 0.08 2.15 6.00 -51.93 -0.31 1.84 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.05 1.03 6.92 -51.93 -0.36 0.67 16 28 H 0.06 1.22 6.56 -51.93 -0.34 0.88 16 29 H 0.06 1.15 7.88 -51.92 -0.41 0.74 16 30 H 0.06 0.90 6.63 -51.93 -0.34 0.56 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.01 6.62 -51.93 -0.34 0.67 16 36 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 1.05 6.03 -51.93 -0.31 0.73 16 39 H 0.07 1.42 5.55 -51.93 -0.29 1.14 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -27.43 287.36 -7.24 -34.67 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.64 Total: -0.13 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -0.18 Total: -20.72 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.35 Total: -9.51 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.43 -7.24 -34.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.741 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds