Wall clock time and date at job start Mon Mar 30 2020 03:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46951 * 111.00385 * 2 1 4 4 C 1.53051 * 109.38414 * 183.17822 * 3 2 1 5 5 N 1.46955 * 109.36291 * 301.63257 * 4 3 2 6 6 C 1.46896 * 111.00110 * 183.16895 * 5 4 3 7 7 C 1.52999 * 109.47166 * 71.63241 * 6 5 4 8 8 C 1.52992 * 109.47175 * 46.09600 * 7 6 5 9 9 C 1.53000 * 109.47069 * 166.09587 * 7 6 5 10 10 C 1.50703 * 109.47134 * 286.09089 * 7 6 5 11 11 H 1.07999 * 119.99851 * 354.51274 * 10 7 6 12 12 C 1.37877 * 119.99995 * 174.50178 * 10 7 6 13 13 N 1.31519 * 119.99616 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 120.00099 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47232 * 90.00226 * 14 12 10 16 16 H 1.48505 * 109.46937 * 210.00434 * 14 12 10 17 17 H 1.48504 * 109.46819 * 329.99975 * 14 12 10 18 18 C 1.46957 * 110.90134 * 59.28431 * 5 4 3 19 19 C 1.46962 * 110.99713 * 123.79961 * 2 1 3 20 20 H 1.09009 * 109.47257 * 59.99753 * 1 2 3 21 21 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47291 * 300.00537 * 1 2 3 23 23 H 1.09004 * 109.48868 * 303.15502 * 3 2 1 24 24 H 1.09002 * 109.49042 * 63.19460 * 3 2 1 25 25 H 1.08999 * 109.48925 * 61.57668 * 4 3 2 26 26 H 1.08995 * 109.48876 * 181.64145 * 4 3 2 27 27 H 1.08999 * 109.47346 * 191.63649 * 6 5 4 28 28 H 1.09003 * 109.46721 * 311.63280 * 6 5 4 29 29 H 1.09004 * 109.47118 * 52.40970 * 8 7 6 30 30 H 1.09002 * 109.47269 * 172.40545 * 8 7 6 31 31 H 1.08999 * 109.46941 * 292.40699 * 8 7 6 32 32 H 1.08997 * 109.47313 * 59.99820 * 9 7 6 33 33 H 1.08997 * 109.47365 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.47168 * 299.99993 * 9 7 6 35 35 H 0.97007 * 119.99676 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.48955 * 180.72347 * 18 5 4 37 37 H 1.09000 * 109.48944 * 60.65803 * 18 5 4 38 38 H 1.08998 * 109.48858 * 296.77835 * 19 2 1 39 39 H 1.09003 * 109.48524 * 56.82400 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3294 -0.0800 5 7 4.0501 0.5657 1.0597 6 6 5.5190 0.5656 1.0598 7 6 6.0291 1.9559 1.4442 8 6 5.2560 2.4638 2.6629 9 6 7.5192 1.8771 1.7822 10 6 5.8254 2.9028 0.2896 11 1 5.4597 2.5305 -0.6559 12 6 6.1056 4.2443 0.4405 13 7 6.5512 4.6975 1.5919 14 14 5.8524 5.4180 -0.9904 15 1 4.4693 5.9569 -0.9499 16 1 6.8230 6.5376 -0.8900 17 1 6.0640 4.6927 -2.2689 18 6 3.5234 -0.8062 1.0598 19 6 1.9956 -0.7632 1.1401 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6014 1.9128 -0.8603 24 1 1.6934 1.8775 0.9171 25 1 3.8257 0.8485 -1.0103 26 1 3.9176 2.3452 -0.0508 27 1 5.8823 -0.1668 1.7806 28 1 5.8824 0.3076 0.0650 29 1 5.2919 1.7147 3.4540 30 1 5.7068 3.3901 3.0190 31 1 4.2186 2.6484 2.3840 32 1 8.0700 1.5152 0.9140 33 1 7.8827 2.8676 2.0556 34 1 7.6667 1.1922 2.6172 35 1 6.7487 5.6413 1.6980 36 1 3.9177 -1.3471 1.9200 37 1 3.8252 -1.3117 0.1425 38 1 1.6937 -0.2821 2.0704 39 1 1.6009 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:47 Heat of formation + Delta-G solvation = 14.032756 kcal Electronic energy + Delta-G solvation = -17119.790741 eV Core-core repulsion = 14676.548703 eV Total energy + Delta-G solvation = -2443.242039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.86957 -36.30136 -33.70962 -31.11482 -30.41021 -27.98803 -25.44988 -25.26963 -24.46241 -22.90135 -22.25330 -19.30105 -18.45498 -16.13519 -15.36074 -14.84758 -14.71022 -14.44430 -14.26428 -13.75016 -13.52251 -12.88151 -12.34367 -12.12894 -11.92086 -11.54604 -11.34384 -11.13379 -11.02403 -10.80520 -10.75476 -10.59471 -10.41979 -10.33997 -10.08848 -9.61660 -9.35710 -9.00998 -8.48040 -8.25392 -8.09337 -7.38357 -5.89381 -3.96868 3.30907 3.38704 3.41313 4.23539 4.45064 4.72640 5.26812 5.33344 5.34779 5.56295 5.57631 5.71836 5.88143 5.92039 5.96729 6.04323 6.13490 6.30136 6.36104 6.48672 6.69150 6.75247 6.92342 7.04497 7.09638 7.17859 7.29476 7.35329 7.39108 7.60333 7.76886 7.83507 7.94278 7.98605 8.31724 8.39843 8.56999 9.00837 9.63761 11.10311 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.009539 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.560354 B = 2934.562642 C = 3573.121905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.056 3.944 4 C 0.040 3.960 5 N -0.522 5.522 6 C 0.075 3.925 7 C 0.066 3.934 8 C -0.109 4.109 9 C -0.126 4.126 10 C -0.503 4.503 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.881 5.881 14 Si 0.881 3.119 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.053 3.947 19 C 0.061 3.939 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.022 0.978 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.023 0.977 26 H 0.136 0.864 27 H 0.044 0.956 28 H 0.018 0.982 29 H -0.003 1.003 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.008 0.992 35 H 0.257 0.743 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 -7.401 -0.982 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.072 4.072 4 C -0.088 4.088 5 N -0.247 5.247 6 C -0.053 4.053 7 C 0.065 3.935 8 C -0.166 4.166 9 C -0.184 4.184 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.520 5.520 14 Si 0.709 3.291 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.076 4.076 19 C -0.067 4.067 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.153 0.847 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.016 0.984 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.421 -7.224 -0.897 10.396 hybrid contribution -0.209 0.563 -0.830 1.025 sum -7.630 -6.661 -1.727 10.275 Atomic orbital electron populations 1.22316 0.88260 1.01300 1.00359 1.62224 1.06945 1.15231 1.42887 1.22294 0.96650 0.87913 1.00304 1.22925 0.91809 1.03463 0.90589 1.62118 1.08979 1.10631 1.42922 1.22261 0.85271 1.00007 0.97717 1.18127 0.91196 0.89340 0.94792 1.21575 0.99447 0.99896 0.95721 1.21763 0.98793 1.01154 0.96733 1.21205 1.43258 0.92319 0.97342 0.92288 1.24914 0.95161 0.98172 0.95288 1.69870 1.44938 1.14109 1.23045 0.86767 0.77952 0.81074 0.83262 1.20725 1.21371 1.20036 1.22139 0.93700 0.91904 0.99838 1.22109 0.95390 0.97368 0.91836 0.91743 0.91983 0.95936 0.91209 0.94232 0.95861 0.84697 0.93727 0.96337 0.98384 0.90652 0.94632 0.95844 0.90707 0.97260 0.93251 0.91280 0.95248 0.94334 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.60 60.06 0.58 0.90 16 2 N -0.55 -8.57 4.97 -242.75 -1.21 -9.77 16 3 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 4 C 0.04 0.79 4.51 -3.77 -0.02 0.77 16 5 N -0.52 -10.38 3.51 -234.47 -0.82 -11.20 16 6 C 0.07 1.59 4.24 -3.83 -0.02 1.58 16 7 C 0.07 1.58 0.55 -155.66 -0.09 1.50 16 8 C -0.11 -2.66 7.52 37.15 0.28 -2.38 16 9 C -0.13 -2.99 8.25 37.16 0.31 -2.68 16 10 C -0.50 -12.93 5.57 -34.44 -0.19 -13.12 16 11 H 0.06 1.52 6.01 -52.49 -0.32 1.20 16 12 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 13 N -0.88 -24.01 9.48 55.43 0.53 -23.48 16 14 Si 0.88 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.05 0.89 5.59 -3.77 -0.02 0.87 16 19 C 0.06 0.92 5.62 -3.76 -0.02 0.90 16 20 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 21 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 22 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.14 3.07 4.48 -51.93 -0.23 2.84 16 27 H 0.04 0.90 7.85 -51.93 -0.41 0.49 16 28 H 0.02 0.40 7.97 -51.93 -0.41 -0.01 16 29 H 0.00 -0.07 8.13 -51.93 -0.42 -0.49 16 30 H 0.07 2.01 5.96 -51.93 -0.31 1.70 16 31 H 0.03 0.88 7.55 -51.93 -0.39 0.49 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.93 6.52 -51.93 -0.34 1.59 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.07 1.08 8.02 -51.93 -0.42 0.66 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -26.64 291.38 -8.47 -35.11 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.03 Total: -1.58 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 0.70 Total: -9.06 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -1.50 Total: -44.46 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.64 -8.47 -35.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.140 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds