Wall clock time and date at job start Mon Mar 30 2020 03:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46951 * 111.00385 * 2 1 4 4 C 1.53051 * 109.38414 * 183.17822 * 3 2 1 5 5 N 1.46955 * 109.36291 * 301.63257 * 4 3 2 6 6 C 1.46896 * 111.00110 * 183.16895 * 5 4 3 7 7 C 1.52999 * 109.47166 * 71.63241 * 6 5 4 8 8 C 1.52992 * 109.47175 * 46.09600 * 7 6 5 9 9 C 1.53000 * 109.47069 * 166.09587 * 7 6 5 10 10 C 1.50703 * 109.47134 * 286.09089 * 7 6 5 11 11 H 1.07999 * 119.99851 * 354.51274 * 10 7 6 12 12 C 1.37877 * 119.99995 * 174.50178 * 10 7 6 13 13 N 1.31519 * 119.99616 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 120.00099 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47232 * 90.00226 * 14 12 10 16 16 H 1.48505 * 109.46937 * 210.00434 * 14 12 10 17 17 H 1.48504 * 109.46819 * 329.99975 * 14 12 10 18 18 C 1.46957 * 110.90134 * 59.28431 * 5 4 3 19 19 C 1.46962 * 110.99713 * 123.79961 * 2 1 3 20 20 H 1.09009 * 109.47257 * 59.99753 * 1 2 3 21 21 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47291 * 300.00537 * 1 2 3 23 23 H 1.09004 * 109.48868 * 303.15502 * 3 2 1 24 24 H 1.09002 * 109.49042 * 63.19460 * 3 2 1 25 25 H 1.08999 * 109.48925 * 61.57668 * 4 3 2 26 26 H 1.08995 * 109.48876 * 181.64145 * 4 3 2 27 27 H 1.08999 * 109.47346 * 191.63649 * 6 5 4 28 28 H 1.09003 * 109.46721 * 311.63280 * 6 5 4 29 29 H 1.09004 * 109.47118 * 52.40970 * 8 7 6 30 30 H 1.09002 * 109.47269 * 172.40545 * 8 7 6 31 31 H 1.08999 * 109.46941 * 292.40699 * 8 7 6 32 32 H 1.08997 * 109.47313 * 59.99820 * 9 7 6 33 33 H 1.08997 * 109.47365 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.47168 * 299.99993 * 9 7 6 35 35 H 0.97007 * 119.99676 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.48955 * 180.72347 * 18 5 4 37 37 H 1.09000 * 109.48944 * 60.65803 * 18 5 4 38 38 H 1.08998 * 109.48858 * 296.77835 * 19 2 1 39 39 H 1.09003 * 109.48524 * 56.82400 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3294 -0.0800 5 7 4.0501 0.5657 1.0597 6 6 5.5190 0.5656 1.0598 7 6 6.0291 1.9559 1.4442 8 6 5.2560 2.4638 2.6629 9 6 7.5192 1.8771 1.7822 10 6 5.8254 2.9028 0.2896 11 1 5.4597 2.5305 -0.6559 12 6 6.1056 4.2443 0.4405 13 7 6.5512 4.6975 1.5919 14 14 5.8524 5.4180 -0.9904 15 1 4.4693 5.9569 -0.9499 16 1 6.8230 6.5376 -0.8900 17 1 6.0640 4.6927 -2.2689 18 6 3.5234 -0.8062 1.0598 19 6 1.9956 -0.7632 1.1401 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6014 1.9128 -0.8603 24 1 1.6934 1.8775 0.9171 25 1 3.8257 0.8485 -1.0103 26 1 3.9176 2.3452 -0.0508 27 1 5.8823 -0.1668 1.7806 28 1 5.8824 0.3076 0.0650 29 1 5.2919 1.7147 3.4540 30 1 5.7068 3.3901 3.0190 31 1 4.2186 2.6484 2.3840 32 1 8.0700 1.5152 0.9140 33 1 7.8827 2.8676 2.0556 34 1 7.6667 1.1922 2.6172 35 1 6.7487 5.6413 1.6980 36 1 3.9177 -1.3471 1.9200 37 1 3.8252 -1.3117 0.1425 38 1 1.6937 -0.2821 2.0704 39 1 1.6009 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:47 Heat of formation + Delta-G solvation = -2.425534 kcal Electronic energy + Delta-G solvation = -17120.504426 eV Core-core repulsion = 14676.548703 eV Total energy + Delta-G solvation = -2443.955724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31686 -37.92863 -35.32626 -33.02205 -31.79714 -29.35202 -27.40350 -27.26068 -25.88637 -24.31924 -23.69169 -20.76171 -20.28311 -17.97982 -16.82762 -16.69403 -16.03584 -15.85330 -15.63754 -15.36753 -14.96647 -14.62805 -14.11086 -13.47265 -13.22559 -13.14473 -13.02017 -12.85032 -12.75785 -12.55333 -12.34741 -12.24357 -12.13064 -12.04158 -11.63451 -11.44415 -11.27142 -10.82466 -10.43231 -10.25196 -9.31475 -8.95885 -7.90535 -6.01779 1.43187 1.46700 1.53325 2.49769 3.04581 3.22387 3.32199 4.05492 4.18669 4.22700 4.38608 4.45583 4.62604 4.65619 4.67669 4.72836 4.78164 4.91152 4.94386 5.00424 5.03081 5.04053 5.16984 5.20489 5.26252 5.43431 5.45545 5.64537 5.75772 5.82342 6.05387 6.07977 6.20279 6.29357 6.50291 6.53546 6.61539 7.01504 7.59989 9.07623 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.009539 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.560354 B = 2934.562642 C = 3573.121905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.064 3.936 4 C 0.046 3.954 5 N -0.533 5.533 6 C 0.084 3.916 7 C 0.056 3.944 8 C -0.091 4.091 9 C -0.119 4.119 10 C -0.504 4.504 11 H 0.054 0.946 12 C 0.023 3.977 13 N -0.905 5.905 14 Si 0.933 3.067 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.273 1.273 18 C 0.052 3.948 19 C 0.065 3.935 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.023 0.977 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.013 0.987 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.027 0.973 38 H 0.032 0.968 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -8.802 -1.348 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.064 4.064 4 C -0.082 4.082 5 N -0.257 5.257 6 C -0.044 4.044 7 C 0.056 3.944 8 C -0.149 4.149 9 C -0.177 4.177 10 C -0.542 4.542 11 H 0.072 0.928 12 C -0.176 4.176 13 N -0.544 5.544 14 Si 0.761 3.239 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.198 1.198 18 C -0.076 4.076 19 C -0.064 4.064 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.042 0.958 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.031 0.969 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.695 -8.640 -1.270 12.323 hybrid contribution 0.158 0.944 -0.705 1.189 sum -8.536 -7.695 -1.975 11.662 Atomic orbital electron populations 1.22392 0.86028 1.02855 1.00845 1.62226 1.08977 1.13807 1.43186 1.22129 0.94735 0.89331 1.00215 1.22670 0.93741 1.01521 0.90243 1.62078 1.07990 1.12769 1.42847 1.22052 0.86481 0.98435 0.97408 1.18208 0.91436 0.90733 0.94049 1.21351 0.98344 0.99009 0.96176 1.21639 0.98538 1.00089 0.97462 1.21412 1.42317 0.92764 0.97663 0.92776 1.25488 0.95449 0.99554 0.97103 1.70000 1.46031 1.14053 1.24333 0.85938 0.77685 0.79289 0.81005 1.20471 1.21609 1.19784 1.22242 0.95059 0.89955 1.00349 1.22136 0.94050 0.98823 0.91347 0.90908 0.89902 0.95803 0.90133 0.95409 0.96852 0.87831 0.92307 0.97341 0.97254 0.93073 0.95895 0.95684 0.93278 0.95346 0.93592 0.89813 0.95483 0.94980 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.60 127.69 1.23 1.81 16 2 N -0.56 -16.00 4.97 -921.92 -4.58 -20.58 16 3 C 0.06 2.14 5.62 86.31 0.49 2.62 16 4 C 0.05 1.82 4.51 86.31 0.39 2.21 16 5 N -0.53 -20.59 3.51 -895.74 -3.14 -23.73 16 6 C 0.08 3.50 4.24 86.30 0.37 3.87 16 7 C 0.06 2.69 0.55 -52.93 -0.03 2.66 16 8 C -0.09 -4.45 7.52 71.98 0.54 -3.91 16 9 C -0.12 -5.60 8.25 71.98 0.59 -5.00 16 10 C -0.50 -26.08 5.57 25.60 0.14 -25.94 16 11 H 0.05 2.81 6.01 -2.91 -0.02 2.79 16 12 C 0.02 1.21 5.15 84.65 0.44 1.65 16 13 N -0.90 -50.11 9.48 21.45 0.20 -49.91 16 14 Si 0.93 42.74 29.54 68.60 2.03 44.77 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 C 0.05 1.64 5.59 86.31 0.48 2.12 16 19 C 0.06 1.76 5.62 86.31 0.49 2.24 16 20 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 21 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 22 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.10 4.77 4.48 -2.39 -0.01 4.76 16 27 H 0.06 2.26 7.85 -2.39 -0.02 2.24 16 28 H 0.01 0.36 7.97 -2.39 -0.02 0.34 16 29 H 0.01 0.39 8.13 -2.38 -0.02 0.37 16 30 H 0.05 2.75 5.96 -2.39 -0.01 2.74 16 31 H 0.02 1.12 7.55 -2.39 -0.02 1.11 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 2.55 6.52 -2.39 -0.02 2.54 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 36 H 0.08 2.37 8.02 -2.39 -0.02 2.35 16 37 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 2.11 8.13 -2.39 -0.02 2.09 16 Total: -1.00 -56.15 291.38 0.61 -55.54 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.98 Total: 9.58 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 5.12 Total: -15.67 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -7.52 Total: -94.22 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -56.15 0.61 -55.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.115 kcal (2) G-P(sol) polarization free energy of solvation -56.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds