Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46941 * 2 1 4 4 C 1.53000 * 109.47075 * 184.91892 * 3 2 1 5 5 C 1.50700 * 109.47074 * 64.91874 * 3 2 1 6 6 H 1.07999 * 120.00021 * 239.99768 * 5 3 2 7 7 C 1.37875 * 119.99934 * 60.00458 * 5 3 2 8 8 N 1.31508 * 120.00284 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99812 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46797 * 119.99847 * 9 7 5 12 12 H 1.48498 * 109.47359 * 239.99372 * 9 7 5 13 13 N 1.46902 * 109.47240 * 304.92125 * 3 2 1 14 14 C 1.46956 * 110.99807 * 301.83304 * 13 3 2 15 15 C 1.53050 * 109.38550 * 176.82291 * 14 13 3 16 16 N 1.46961 * 109.36409 * 58.38486 * 15 14 13 17 17 C 1.46895 * 110.99845 * 176.81051 * 16 15 14 18 18 C 1.46950 * 110.88234 * 300.68680 * 16 15 14 19 19 C 1.46958 * 111.01916 * 178.01996 * 13 3 2 20 20 H 1.08994 * 109.47217 * 298.02662 * 1 2 3 21 21 H 1.09005 * 109.46858 * 58.02233 * 1 2 3 22 22 H 1.09000 * 109.46834 * 178.02037 * 1 2 3 23 23 H 1.08989 * 109.47313 * 239.99930 * 2 1 3 24 24 H 1.08997 * 109.46523 * 119.99291 * 2 1 3 25 25 H 1.08994 * 109.46924 * 179.97438 * 4 3 2 26 26 H 1.08997 * 109.46843 * 300.00257 * 4 3 2 27 27 H 1.09001 * 109.46848 * 60.00197 * 4 3 2 28 28 H 0.97002 * 120.00230 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.48942 * 56.84197 * 14 13 3 30 30 H 1.09002 * 109.48791 * 296.80150 * 14 13 3 31 31 H 1.08999 * 109.49353 * 178.35705 * 15 14 13 32 32 H 1.08998 * 109.48522 * 298.39997 * 15 14 13 33 33 H 1.09003 * 109.47172 * 60.00825 * 17 16 15 34 34 H 1.09005 * 109.46896 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47932 * 300.00656 * 17 16 15 36 36 H 1.09001 * 109.48839 * 179.28706 * 18 16 15 37 37 H 1.09009 * 109.48640 * 299.35127 * 18 16 15 38 38 H 1.09001 * 109.46935 * 63.19838 * 19 13 3 39 39 H 1.08994 * 109.50620 * 303.15452 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1237 5 6 1.6396 2.1169 1.2868 6 1 1.0137 2.9967 1.2634 7 6 2.0724 1.6107 2.4941 8 7 2.8342 0.5391 2.5227 9 14 1.5766 2.4470 4.0892 10 1 0.7238 3.6244 3.7865 11 1 0.8184 1.4902 4.9348 12 1 2.7939 2.8914 4.8143 13 7 1.4557 2.1685 -1.1356 14 6 1.7898 1.5130 -2.4077 15 6 1.0991 2.2516 -3.5566 16 7 1.5308 3.6564 -3.5620 17 6 0.9470 4.3821 -4.6979 18 6 1.1963 4.3120 -2.2901 19 6 1.8869 3.5734 -1.1412 20 1 -0.3633 0.4829 0.9071 21 1 -0.3633 0.5443 -0.8718 22 1 -0.3633 -1.0271 -0.0355 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.9282 2.4720 -0.1241 26 1 3.9985 0.9057 0.7189 27 1 3.8546 0.9566 -1.0545 28 1 3.1383 0.1827 3.3720 29 1 1.4490 0.4779 -2.3839 30 1 2.8693 1.5371 -2.5568 31 1 1.3691 1.7846 -4.5037 32 1 0.0185 2.2034 -3.4223 33 1 -0.1404 4.3509 -4.6289 34 1 1.2823 5.4191 -4.6776 35 1 1.2653 3.9151 -5.6299 36 1 1.5371 5.3471 -2.3139 37 1 0.1167 4.2876 -2.1412 38 1 2.9675 3.6212 -1.2757 39 1 1.6172 4.0406 -0.1942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 15.624988 kcal Electronic energy + Delta-G solvation = -17342.182411 eV Core-core repulsion = 14899.009417 eV Total energy + Delta-G solvation = -2443.172994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.97592 -36.29131 -32.79703 -31.13682 -30.20651 -28.65130 -26.56135 -25.31601 -23.29338 -22.89718 -21.75336 -19.66772 -18.23897 -16.15092 -15.41020 -14.70642 -14.57956 -14.34794 -14.01448 -13.65907 -13.28496 -12.65301 -12.48001 -12.08831 -11.97426 -11.72527 -11.56442 -11.21045 -10.94991 -10.86541 -10.53978 -10.46414 -10.38389 -10.19591 -9.96662 -9.72638 -9.56881 -9.21390 -8.60147 -8.29657 -8.03725 -6.99433 -5.95632 -4.01430 3.30095 3.38788 3.42439 4.29146 4.42244 5.05380 5.31693 5.34101 5.43226 5.62636 5.67026 5.90029 5.92506 5.96566 6.02041 6.17198 6.30476 6.40384 6.56961 6.62340 6.68232 6.79777 6.80650 6.92230 6.99626 7.16925 7.28673 7.36365 7.38068 7.53022 7.64822 7.76615 7.86024 7.93711 8.28906 8.51699 8.69895 9.03197 9.63425 11.07043 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035348 B = 0.009043 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.932414 B = 3095.602309 C = 3402.511149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.238 3.762 4 C -0.166 4.166 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.524 5.524 14 C 0.051 3.949 15 C 0.060 3.940 16 N -0.545 5.545 17 C 0.027 3.973 18 C 0.057 3.943 19 C 0.064 3.936 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.015 0.985 23 H 0.013 0.987 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.087 0.913 27 H 0.009 0.991 28 H 0.258 0.742 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 3.436 -9.040 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.150 3.850 4 C -0.225 4.225 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.249 5.249 14 C -0.078 4.078 15 C -0.068 4.068 16 N -0.270 5.270 17 C -0.122 4.122 18 C -0.071 4.071 19 C -0.064 4.064 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.470 3.320 -8.892 9.808 hybrid contribution -0.187 0.423 0.830 0.950 sum -2.656 3.743 -8.062 9.277 Atomic orbital electron populations 1.21488 0.97559 0.97285 1.01695 1.21567 0.94650 0.97828 1.00317 1.18668 0.88483 0.90639 0.87193 1.22384 1.00878 0.99410 0.99828 1.21054 1.30086 1.11846 0.89503 0.92111 1.24847 0.95207 0.95066 0.98796 1.69807 1.35541 1.22171 1.25373 0.86548 0.78177 0.79532 0.83784 1.19880 1.21163 1.21285 1.62456 1.59228 1.01240 1.01956 1.22122 0.97774 0.97887 0.89976 1.22178 0.97848 0.88202 0.98562 1.62172 1.59100 1.02715 1.03054 1.22312 0.96774 0.98844 0.94249 1.22264 0.98508 0.97271 0.89057 1.22011 0.97027 0.90418 0.96986 0.92676 0.93728 0.96610 0.96798 0.88817 0.95337 0.89411 0.97171 0.93168 0.90728 0.94867 0.91605 0.94630 0.96107 0.91883 0.91936 0.91514 0.94640 0.94955 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.43 37.16 0.35 -2.32 16 2 C -0.11 -2.47 4.26 -26.73 -0.11 -2.58 16 3 C 0.24 5.64 0.13 -132.75 -0.02 5.62 16 4 C -0.17 -3.99 7.56 37.16 0.28 -3.71 16 5 C -0.49 -12.61 6.35 -34.44 -0.22 -12.83 16 6 H 0.06 1.61 6.55 -52.49 -0.34 1.27 16 7 C 0.06 1.62 5.14 -17.82 -0.09 1.52 16 8 N -0.89 -24.04 9.33 55.43 0.52 -23.53 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.85 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.52 -11.08 3.55 -220.15 -0.78 -11.86 16 14 C 0.05 0.97 4.60 -3.77 -0.02 0.95 16 15 C 0.06 0.98 5.62 -3.76 -0.02 0.96 16 16 N -0.55 -8.72 4.97 -242.76 -1.21 -9.93 16 17 C 0.03 0.34 9.60 60.06 0.58 0.91 16 18 C 0.06 0.96 5.62 -3.77 -0.02 0.94 16 19 C 0.06 1.28 4.91 -3.77 -0.02 1.26 16 20 H 0.05 1.29 7.44 -51.93 -0.39 0.90 16 21 H 0.04 0.93 7.08 -51.93 -0.37 0.56 16 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.01 0.30 6.59 -51.94 -0.34 -0.04 16 24 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 25 H 0.03 0.67 6.52 -51.93 -0.34 0.34 16 26 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 27 H 0.01 0.21 6.51 -51.93 -0.34 -0.12 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.07 1.41 6.02 -51.93 -0.31 1.10 16 30 H 0.03 0.67 6.52 -51.93 -0.34 0.33 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 37 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.03 0.68 6.52 -51.93 -0.34 0.34 16 39 H 0.09 1.83 6.25 -51.93 -0.32 1.50 16 LS Contribution 283.36 15.07 4.27 4.27 Total: -1.00 -26.56 283.36 -8.10 -34.67 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.57 Total: -0.19 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 0.69 Total: -9.29 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.47 Total: -45.32 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.56 -8.10 -34.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.293 kcal (2) G-P(sol) polarization free energy of solvation -26.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds