Wall clock time and date at job start Mon Mar 30 2020 03:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47249 * 2 1 4 4 C 1.53000 * 109.47330 * 65.53181 * 3 2 1 5 5 C 1.50694 * 109.47198 * 185.53594 * 3 2 1 6 6 H 1.08006 * 119.99941 * 119.99927 * 5 3 2 7 7 C 1.37877 * 120.00036 * 299.99558 * 5 3 2 8 8 N 1.31512 * 120.00083 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00150 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47114 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47238 * 120.00328 * 9 7 5 12 12 H 1.48508 * 109.46840 * 240.00159 * 9 7 5 13 13 N 1.46907 * 109.47170 * 305.53588 * 3 2 1 14 14 C 1.46954 * 111.00296 * 177.78243 * 13 3 2 15 15 C 1.53048 * 109.36454 * 183.18652 * 14 13 3 16 16 N 1.46952 * 109.36538 * 301.59845 * 15 14 13 17 17 C 1.46900 * 110.99919 * 183.19243 * 16 15 14 18 18 C 1.46954 * 110.87964 * 59.32039 * 16 15 14 19 19 C 1.46962 * 110.99815 * 301.58156 * 13 3 2 20 20 H 1.08991 * 109.47336 * 184.02236 * 1 2 3 21 21 H 1.08998 * 109.47108 * 304.02648 * 1 2 3 22 22 H 1.09004 * 109.46887 * 64.02066 * 1 2 3 23 23 H 1.08997 * 109.46748 * 239.99723 * 2 1 3 24 24 H 1.08996 * 109.46924 * 119.99662 * 2 1 3 25 25 H 1.09003 * 109.47560 * 300.00249 * 4 3 2 26 26 H 1.09000 * 109.46852 * 60.00392 * 4 3 2 27 27 H 1.09001 * 109.47069 * 179.97438 * 4 3 2 28 28 H 0.96996 * 120.00244 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.48761 * 63.21840 * 14 13 3 30 30 H 1.09002 * 109.50423 * 303.16791 * 14 13 3 31 31 H 1.08999 * 109.48845 * 181.62829 * 15 14 13 32 32 H 1.08999 * 109.50618 * 61.57655 * 15 14 13 33 33 H 1.08998 * 109.47747 * 60.00018 * 17 16 15 34 34 H 1.09003 * 109.46969 * 180.02562 * 17 16 15 35 35 H 1.09004 * 109.46889 * 299.99643 * 17 16 15 36 36 H 1.08998 * 109.48761 * 60.64823 * 18 16 15 37 37 H 1.09004 * 109.48765 * 180.71452 * 18 16 15 38 38 H 1.09003 * 109.48691 * 296.78151 * 19 13 3 39 39 H 1.08996 * 109.48595 * 56.84113 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6468 2.1225 1.3129 5 6 3.5407 1.4446 -0.1371 6 1 4.0055 1.9389 -0.9774 7 6 4.3205 0.8158 0.8103 8 7 3.7545 0.2136 1.8334 9 14 6.1808 0.8191 0.6408 10 1 6.5645 1.5593 -0.5879 11 1 6.7846 1.4804 1.8255 12 1 6.6721 -0.5795 0.5506 13 7 1.4443 2.1725 -1.1271 14 6 1.8713 3.5786 -1.1285 15 6 1.1686 4.3212 -2.2674 16 7 1.4947 3.6736 -3.5456 17 6 0.8991 4.4036 -4.6727 18 6 1.0678 2.2674 -3.5442 19 6 1.7704 1.5248 -2.4054 20 1 -0.3633 -1.0250 0.0721 21 1 -0.3633 0.5750 0.8517 22 1 -0.3633 0.4502 -0.9239 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.5613 2.1209 1.4121 26 1 2.0888 1.5809 2.1492 27 1 2.0106 3.1500 1.3131 28 1 4.3030 -0.2292 2.4997 29 1 2.9506 3.6308 -1.2716 30 1 1.6080 4.0399 -0.1766 31 1 1.5057 5.3576 -2.2884 32 1 0.0904 4.2927 -2.1099 33 1 1.2840 5.4232 -4.6893 34 1 1.1556 3.9027 -5.6062 35 1 -0.1848 4.4262 -4.5588 36 1 -0.0115 2.2153 -3.4011 37 1 1.3314 1.8064 -4.4961 38 1 2.8486 1.5537 -2.5630 39 1 1.4333 0.4885 -2.3843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:17 Heat of formation + Delta-G solvation = 13.951670 kcal Electronic energy + Delta-G solvation = -17359.634492 eV Core-core repulsion = 14916.388937 eV Total energy + Delta-G solvation = -2443.245555 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.88506 -36.26904 -32.65419 -31.37617 -30.37253 -28.38799 -26.56548 -25.30218 -23.35300 -22.75062 -21.77736 -19.37873 -18.41019 -16.25437 -15.29228 -14.64899 -14.60555 -14.35734 -14.02953 -13.53540 -13.34782 -13.16105 -12.18530 -12.00844 -11.89040 -11.66881 -11.36374 -11.15050 -10.88974 -10.73492 -10.63221 -10.53427 -10.42956 -10.23710 -10.04305 -9.75837 -9.46130 -9.09424 -8.83050 -8.28608 -7.97979 -7.02907 -5.91928 -4.06790 3.28101 3.37097 3.41867 4.33621 4.43080 5.11124 5.28260 5.37086 5.48266 5.65799 5.72128 5.95361 5.95929 6.02412 6.06922 6.23383 6.32019 6.43070 6.44212 6.62785 6.72355 6.85204 6.93668 7.00764 7.04143 7.08454 7.23146 7.41447 7.44549 7.50690 7.62817 7.75770 7.87468 8.05329 8.29102 8.49851 8.52267 9.03431 9.60992 11.03542 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.010149 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.967520 B = 2758.320389 C = 3228.217259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.235 3.765 4 C -0.128 4.128 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.530 5.530 14 C 0.061 3.939 15 C 0.059 3.941 16 N -0.544 5.544 17 C 0.027 3.973 18 C 0.059 3.941 19 C 0.062 3.938 20 H 0.022 0.978 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.089 0.911 25 H 0.018 0.982 26 H 0.084 0.916 27 H 0.025 0.975 28 H 0.259 0.741 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 4.254 -6.931 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C 0.147 3.853 4 C -0.186 4.186 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.255 5.255 14 C -0.068 4.068 15 C -0.069 4.069 16 N -0.269 5.269 17 C -0.122 4.122 18 C -0.070 4.070 19 C -0.067 4.067 20 H 0.041 0.959 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.107 0.893 25 H 0.037 0.963 26 H 0.102 0.898 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.341 4.145 -6.755 9.557 hybrid contribution 1.117 0.008 -0.111 1.123 sum -4.223 4.153 -6.866 9.068 Atomic orbital electron populations 1.21769 0.98892 0.98117 1.00942 1.21562 0.91998 0.98544 1.01987 1.18604 0.90980 0.89621 0.86052 1.21873 0.96867 0.98870 1.00987 1.21721 0.92112 1.34542 1.08680 0.92471 1.24856 0.98078 0.95054 0.95178 1.69826 1.34562 1.35775 1.12125 0.86649 0.86421 0.77630 0.77959 1.19957 1.21153 1.21139 1.62623 1.58555 1.01244 1.03057 1.21981 0.98255 0.90407 0.96129 1.22233 0.98131 0.97329 0.89229 1.62139 1.58960 1.02757 1.02996 1.22314 0.96555 0.98855 0.94427 1.22238 0.97592 0.88113 0.99012 1.21963 0.98693 0.97208 0.88808 0.95853 0.93714 0.93534 0.94834 0.89311 0.96303 0.89765 0.95631 0.93116 0.93672 0.90957 0.91624 0.94980 0.91925 0.91947 0.96231 0.94995 0.91627 0.93679 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.40 37.16 0.35 -2.46 16 2 C -0.10 -2.38 4.10 -26.73 -0.11 -2.49 16 3 C 0.24 5.55 0.13 -132.75 -0.02 5.53 16 4 C -0.13 -3.03 7.72 37.16 0.29 -2.74 16 5 C -0.53 -13.91 6.57 -34.44 -0.23 -14.14 16 6 H 0.06 1.56 5.80 -52.48 -0.30 1.26 16 7 C 0.07 1.87 5.15 -17.82 -0.09 1.77 16 8 N -0.88 -23.92 9.42 55.43 0.52 -23.40 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.53 -11.16 3.65 -220.16 -0.80 -11.96 16 14 C 0.06 1.22 4.93 -3.77 -0.02 1.20 16 15 C 0.06 0.99 5.62 -3.77 -0.02 0.97 16 16 N -0.54 -8.97 4.97 -242.77 -1.21 -10.18 16 17 C 0.03 0.35 9.60 60.06 0.58 0.93 16 18 C 0.06 0.98 5.62 -3.77 -0.02 0.96 16 19 C 0.06 1.23 4.68 -3.77 -0.02 1.22 16 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.04 0.90 6.41 -51.93 -0.33 0.57 16 22 H 0.05 0.91 7.13 -51.93 -0.37 0.54 16 23 H 0.03 0.78 6.62 -51.93 -0.34 0.44 16 24 H 0.09 2.29 6.24 -51.93 -0.32 1.97 16 25 H 0.02 0.41 6.50 -51.93 -0.34 0.07 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 27 H 0.02 0.58 6.30 -51.93 -0.33 0.26 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.05 1.01 6.71 -51.93 -0.35 0.66 16 30 H 0.07 1.44 6.09 -51.93 -0.32 1.12 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.04 1.01 6.67 -51.93 -0.35 0.66 16 39 H 0.07 1.44 5.93 -51.93 -0.31 1.14 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -26.68 282.30 -8.06 -34.73 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.49 Total: -0.25 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 0.69 Total: -9.26 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -1.49 Total: -45.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.68 -8.06 -34.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.686 kcal (2) G-P(sol) polarization free energy of solvation -26.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds