Wall clock time and date at job start Mon Mar 30 2020 03:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47249 * 2 1 4 4 C 1.53000 * 109.47330 * 65.53181 * 3 2 1 5 5 C 1.50694 * 109.47198 * 185.53594 * 3 2 1 6 6 H 1.08006 * 119.99941 * 119.99927 * 5 3 2 7 7 C 1.37877 * 120.00036 * 299.99558 * 5 3 2 8 8 N 1.31512 * 120.00083 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00150 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47114 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47238 * 120.00328 * 9 7 5 12 12 H 1.48508 * 109.46840 * 240.00159 * 9 7 5 13 13 N 1.46907 * 109.47170 * 305.53588 * 3 2 1 14 14 C 1.46954 * 111.00296 * 177.78243 * 13 3 2 15 15 C 1.53048 * 109.36454 * 183.18652 * 14 13 3 16 16 N 1.46952 * 109.36538 * 301.59845 * 15 14 13 17 17 C 1.46900 * 110.99919 * 183.19243 * 16 15 14 18 18 C 1.46954 * 110.87964 * 59.32039 * 16 15 14 19 19 C 1.46962 * 110.99815 * 301.58156 * 13 3 2 20 20 H 1.08991 * 109.47336 * 184.02236 * 1 2 3 21 21 H 1.08998 * 109.47108 * 304.02648 * 1 2 3 22 22 H 1.09004 * 109.46887 * 64.02066 * 1 2 3 23 23 H 1.08997 * 109.46748 * 239.99723 * 2 1 3 24 24 H 1.08996 * 109.46924 * 119.99662 * 2 1 3 25 25 H 1.09003 * 109.47560 * 300.00249 * 4 3 2 26 26 H 1.09000 * 109.46852 * 60.00392 * 4 3 2 27 27 H 1.09001 * 109.47069 * 179.97438 * 4 3 2 28 28 H 0.96996 * 120.00244 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.48761 * 63.21840 * 14 13 3 30 30 H 1.09002 * 109.50423 * 303.16791 * 14 13 3 31 31 H 1.08999 * 109.48845 * 181.62829 * 15 14 13 32 32 H 1.08999 * 109.50618 * 61.57655 * 15 14 13 33 33 H 1.08998 * 109.47747 * 60.00018 * 17 16 15 34 34 H 1.09003 * 109.46969 * 180.02562 * 17 16 15 35 35 H 1.09004 * 109.46889 * 299.99643 * 17 16 15 36 36 H 1.08998 * 109.48761 * 60.64823 * 18 16 15 37 37 H 1.09004 * 109.48765 * 180.71452 * 18 16 15 38 38 H 1.09003 * 109.48691 * 296.78151 * 19 13 3 39 39 H 1.08996 * 109.48595 * 56.84113 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6468 2.1225 1.3129 5 6 3.5407 1.4446 -0.1371 6 1 4.0055 1.9389 -0.9774 7 6 4.3205 0.8158 0.8103 8 7 3.7545 0.2136 1.8334 9 14 6.1808 0.8191 0.6408 10 1 6.5645 1.5593 -0.5879 11 1 6.7846 1.4804 1.8255 12 1 6.6721 -0.5795 0.5506 13 7 1.4443 2.1725 -1.1271 14 6 1.8713 3.5786 -1.1285 15 6 1.1686 4.3212 -2.2674 16 7 1.4947 3.6736 -3.5456 17 6 0.8991 4.4036 -4.6727 18 6 1.0678 2.2674 -3.5442 19 6 1.7704 1.5248 -2.4054 20 1 -0.3633 -1.0250 0.0721 21 1 -0.3633 0.5750 0.8517 22 1 -0.3633 0.4502 -0.9239 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.5613 2.1209 1.4121 26 1 2.0888 1.5809 2.1492 27 1 2.0106 3.1500 1.3131 28 1 4.3030 -0.2292 2.4997 29 1 2.9506 3.6308 -1.2716 30 1 1.6080 4.0399 -0.1766 31 1 1.5057 5.3576 -2.2884 32 1 0.0904 4.2927 -2.1099 33 1 1.2840 5.4232 -4.6893 34 1 1.1556 3.9027 -5.6062 35 1 -0.1848 4.4262 -4.5588 36 1 -0.0115 2.2153 -3.4011 37 1 1.3314 1.8064 -4.4961 38 1 2.8486 1.5537 -2.5630 39 1 1.4333 0.4885 -2.3843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:17 Heat of formation + Delta-G solvation = -3.171229 kcal Electronic energy + Delta-G solvation = -17360.376997 eV Core-core repulsion = 14916.388937 eV Total energy + Delta-G solvation = -2443.988059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46503 -37.83389 -34.45685 -33.15693 -31.89826 -30.04870 -28.03106 -27.27954 -24.91054 -24.20776 -23.44099 -20.89373 -20.28963 -18.05217 -17.10307 -16.39636 -15.91855 -15.70765 -15.61584 -15.19912 -15.12961 -14.75768 -13.81428 -13.52714 -13.28773 -13.24052 -13.07254 -12.78592 -12.65509 -12.45643 -12.38569 -12.21796 -12.03407 -11.97376 -11.85622 -11.61281 -11.12224 -10.94585 -10.70808 -10.28615 -9.22641 -8.83882 -7.93181 -6.15659 1.35182 1.39919 1.48510 2.43259 3.10681 3.21114 3.47305 4.14147 4.23142 4.32750 4.53069 4.53738 4.64910 4.69456 4.71212 4.77101 4.80547 4.90481 4.94129 5.03496 5.09689 5.16064 5.17005 5.25284 5.27856 5.34584 5.48236 5.60619 5.71998 5.77896 5.96735 6.10548 6.16093 6.27417 6.36392 6.52531 6.75907 7.05536 7.54070 8.97178 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.010149 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.967520 B = 2758.320389 C = 3228.217259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C 0.232 3.768 4 C -0.117 4.117 5 C -0.538 4.538 6 H 0.039 0.961 7 C 0.030 3.970 8 N -0.900 5.900 9 Si 0.936 3.064 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.525 5.525 14 C 0.063 3.937 15 C 0.068 3.932 16 N -0.563 5.563 17 C 0.029 3.971 18 C 0.068 3.932 19 C 0.065 3.935 20 H 0.041 0.959 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.013 0.987 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 4.964 -8.222 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.135 4.135 3 C 0.143 3.857 4 C -0.175 4.175 5 C -0.577 4.577 6 H 0.057 0.943 7 C -0.170 4.170 8 N -0.539 5.539 9 Si 0.763 3.237 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.249 5.249 14 C -0.066 4.066 15 C -0.060 4.060 16 N -0.288 5.288 17 C -0.118 4.118 18 C -0.060 4.060 19 C -0.064 4.064 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.031 0.969 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.400 4.862 -8.059 11.382 hybrid contribution 1.461 -0.200 0.270 1.499 sum -4.938 4.663 -7.790 10.335 Atomic orbital electron populations 1.21621 0.96172 0.99413 1.01198 1.21406 0.94317 0.97775 1.00043 1.18551 0.89714 0.90309 0.87093 1.21717 0.97469 0.98210 1.00140 1.21870 0.93845 1.34075 1.07916 0.94329 1.25406 1.01161 0.95190 0.95233 1.69935 1.35384 1.36146 1.12419 0.85862 0.82825 0.77461 0.77521 1.20505 1.20844 1.20838 1.62616 1.57740 1.01672 1.02848 1.21975 0.96774 0.90147 0.97712 1.22115 0.97929 0.97683 0.88247 1.62113 1.60048 1.02844 1.03819 1.22368 0.96993 0.99170 0.93318 1.22125 0.97353 0.88316 0.98242 1.21942 0.97139 0.97738 0.89537 0.94022 0.93868 0.92739 0.95866 0.92077 0.94880 0.92181 0.95893 0.93179 0.96785 0.91306 0.89685 0.94320 0.90691 0.90673 0.95264 0.94291 0.89692 0.96871 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.40 71.98 0.68 -4.23 16 2 C -0.10 -4.51 4.10 30.59 0.13 -4.39 16 3 C 0.23 11.02 0.13 2.78 0.00 11.02 16 4 C -0.12 -5.57 7.72 71.98 0.56 -5.02 16 5 C -0.54 -28.78 6.57 25.60 0.17 -28.61 16 6 H 0.04 2.18 5.80 -2.91 -0.02 2.16 16 7 C 0.03 1.62 5.15 84.65 0.44 2.06 16 8 N -0.90 -49.48 9.42 21.45 0.20 -49.28 16 9 Si 0.94 43.98 29.54 68.60 2.03 46.01 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 N -0.52 -21.85 3.65 -850.44 -3.11 -24.96 16 14 C 0.06 2.48 4.93 86.31 0.43 2.90 16 15 C 0.07 2.14 5.62 86.31 0.49 2.63 16 16 N -0.56 -17.19 4.97 -921.97 -4.58 -21.77 16 17 C 0.03 0.65 9.60 127.69 1.23 1.88 16 18 C 0.07 2.12 5.62 86.31 0.49 2.60 16 19 C 0.07 2.57 4.68 86.31 0.40 2.97 16 20 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.04 1.67 6.41 -2.39 -0.02 1.65 16 22 H 0.05 2.01 7.13 -2.38 -0.02 1.99 16 23 H 0.02 1.09 6.62 -2.39 -0.02 1.07 16 24 H 0.06 3.19 6.24 -2.39 -0.01 3.18 16 25 H 0.03 1.43 6.50 -2.39 -0.02 1.41 16 26 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 27 H 0.02 1.05 6.30 -2.39 -0.02 1.03 16 28 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.01 0.63 6.71 -2.39 -0.02 0.62 16 30 H 0.07 2.72 6.09 -2.39 -0.01 2.70 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 2.32 8.13 -2.39 -0.02 2.31 16 38 H 0.01 0.59 6.67 -2.39 -0.02 0.58 16 39 H 0.07 2.72 5.93 -2.39 -0.01 2.71 16 Total: -1.00 -56.97 282.30 0.54 -56.43 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.01 Total: 9.76 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.99 Total: -16.19 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -7.48 Total: -96.00 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -56.97 0.54 -56.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.258 kcal (2) G-P(sol) polarization free energy of solvation -56.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds