Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 H 1.08996 * 109.47595 * 184.57636 * 3 2 1 5 5 C 1.53001 * 109.46734 * 64.57585 * 3 2 1 6 6 C 1.50694 * 109.47262 * 65.00561 * 5 3 2 7 7 H 1.08006 * 119.99686 * 359.97438 * 6 5 3 8 8 C 1.37874 * 120.00092 * 179.97438 * 6 5 3 9 9 N 1.31514 * 120.00363 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99899 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47096 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47293 * 120.00312 * 10 8 6 13 13 H 1.48504 * 109.46923 * 239.99772 * 10 8 6 14 14 C 1.53006 * 109.46728 * 304.58046 * 3 2 1 15 15 H 1.08998 * 108.83838 * 57.45713 * 14 3 2 16 16 C 1.54344 * 108.86030 * 299.02632 * 14 3 2 17 17 C 1.54606 * 111.45240 * 198.52078 * 16 14 3 18 18 C 1.50291 * 112.95254 * 319.00381 * 17 16 14 19 19 C 1.54273 * 108.49132 * 92.08442 * 18 17 16 20 20 C 1.45982 * 111.73014 * 281.97085 * 19 18 17 21 21 O 1.39960 * 108.85768 * 175.97987 * 14 3 2 22 22 H 1.08994 * 109.47465 * 305.68791 * 1 2 3 23 23 H 1.08998 * 109.47240 * 65.69832 * 1 2 3 24 24 H 1.09008 * 109.47133 * 185.69047 * 1 2 3 25 25 H 1.09001 * 109.47457 * 240.00055 * 2 1 3 26 26 H 1.09003 * 109.47196 * 120.00087 * 2 1 3 27 27 H 1.09008 * 109.46801 * 185.00180 * 5 3 2 28 28 H 1.09000 * 109.47278 * 305.00247 * 5 3 2 29 29 H 0.96996 * 120.00652 * 180.02562 * 9 8 6 30 30 H 1.09005 * 109.08494 * 78.01213 * 16 14 3 31 31 H 1.08998 * 109.09132 * 319.02637 * 16 14 3 32 32 H 1.09006 * 108.79129 * 198.11372 * 17 16 14 33 33 H 1.09000 * 108.79226 * 79.89786 * 17 16 14 34 34 H 1.08996 * 109.63760 * 211.78812 * 18 17 16 35 35 H 1.09002 * 109.63508 * 332.38318 * 18 17 16 36 36 H 1.08996 * 109.02535 * 42.54906 * 19 18 17 37 37 H 1.08995 * 109.02937 * 161.46427 * 19 18 17 38 38 H 1.09000 * 108.95639 * 180.73915 * 20 19 18 39 39 H 1.08996 * 108.95584 * 299.47743 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1269 1.4436 -0.0820 5 6 1.6261 2.1297 1.3028 6 6 2.3170 1.4626 2.4641 7 1 2.9843 0.6313 2.2903 8 6 2.0973 1.9135 3.7484 9 7 1.2852 2.9261 3.9600 10 14 2.9544 1.0870 5.1878 11 1 3.8094 -0.0187 4.6863 12 1 3.7970 2.0814 5.8995 13 1 1.9374 0.5410 6.1222 14 6 1.4381 2.1962 -1.1877 15 1 0.3512 2.1500 -1.1196 16 6 1.8840 1.5062 -2.4943 17 6 1.7145 2.4412 -3.7139 18 6 0.4376 3.2328 -3.6725 19 6 0.7208 4.5825 -2.9811 20 6 0.7928 4.4417 -1.5299 21 8 1.8389 3.5356 -1.1237 22 1 -0.3634 0.5995 0.8346 23 1 -0.3633 0.4229 -0.9366 24 1 -0.3634 -1.0227 0.1019 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9114 3.1811 1.2656 28 1 0.5463 2.0505 1.4283 29 1 1.1309 3.2435 4.8635 30 1 1.2835 0.6093 -2.6467 31 1 2.9324 1.2210 -2.4070 32 1 1.7247 1.8388 -4.6223 33 1 2.5558 3.1335 -3.7451 34 1 0.0827 3.4088 -4.6880 35 1 -0.3159 2.6832 -3.1083 36 1 1.6685 4.9773 -3.3473 37 1 -0.0759 5.2834 -3.2300 38 1 0.9806 5.4203 -1.0881 39 1 -0.1620 4.0653 -1.1629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -78.881430 kcal Electronic energy + Delta-G solvation = -16900.621181 eV Core-core repulsion = 14421.057330 eV Total energy + Delta-G solvation = -2479.563851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50499 -35.92693 -34.27912 -32.59545 -31.46530 -28.66346 -26.93435 -25.46434 -23.63338 -22.69379 -21.10468 -19.89437 -18.31866 -16.39508 -16.22607 -15.44594 -14.89211 -14.34277 -14.26850 -13.82809 -13.39123 -13.06156 -12.71636 -12.47201 -12.13891 -11.90782 -11.61857 -11.41918 -11.10620 -10.77596 -10.71361 -10.56318 -10.45851 -10.36294 -10.20639 -10.03363 -9.74248 -9.44898 -9.33901 -8.84173 -8.56133 -8.22448 -5.89660 -3.89666 3.36034 3.43612 3.47502 4.31500 4.53795 4.82523 5.02500 5.16590 5.38047 5.42924 5.45629 5.47670 5.77241 5.82131 5.84757 5.85583 5.90440 6.04593 6.07468 6.12132 6.18545 6.24288 6.31859 6.39205 6.49256 6.53275 6.55402 6.68888 6.88269 7.01689 7.11508 7.34069 7.83811 7.90219 8.07662 8.15530 8.56209 9.17422 9.72570 11.21734 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037227 B = 0.007399 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.959837 B = 3783.509369 C = 4165.765250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.084 4.084 4 H 0.060 0.940 5 C 0.030 3.970 6 C -0.509 4.509 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.093 3.907 15 H 0.053 0.947 16 C -0.139 4.139 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.149 4.149 20 C 0.058 3.942 21 O -0.354 6.354 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.015 0.985 29 H 0.257 0.743 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -0.467 -13.853 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.103 4.103 4 H 0.078 0.922 5 C -0.007 4.007 6 C -0.548 4.548 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.714 3.286 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.034 3.966 15 H 0.071 0.929 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.187 4.187 20 C -0.019 4.019 21 O -0.272 6.272 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.335 -0.304 -13.653 13.855 hybrid contribution 0.195 -0.462 0.757 0.908 sum -2.140 -0.766 -12.896 13.095 Atomic orbital electron populations 1.21863 0.97019 1.00555 1.01469 1.21421 0.95367 0.96863 1.00775 1.21438 0.99416 0.93810 0.95627 0.92181 1.19119 0.96286 0.96115 0.89191 1.21313 1.26281 1.15720 0.91481 0.92784 1.24991 0.95490 0.95171 0.98837 1.69977 1.36898 1.26019 1.20743 0.86636 0.79509 0.79485 0.82960 1.19843 1.21162 1.21211 1.22039 0.98156 0.82538 0.93826 0.92865 1.22679 1.01985 0.98219 0.94817 1.21325 0.97885 0.98559 0.97657 1.21313 0.98244 0.96017 1.00104 1.21224 1.02215 0.97771 0.97498 1.21432 0.91582 0.95015 0.93874 1.87810 1.37641 1.15385 1.86367 0.91250 0.94045 0.94113 0.94183 0.90843 0.95685 0.96645 0.93310 0.91820 0.91812 0.93057 0.92009 0.92163 0.91817 0.91403 0.91535 0.89988 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.11 37.16 0.34 -2.32 16 2 C -0.11 -2.01 5.18 -26.73 -0.14 -2.15 16 3 C -0.08 -1.78 1.81 -90.62 -0.16 -1.94 16 4 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 5 C 0.03 0.77 4.20 -27.89 -0.12 0.66 16 6 C -0.51 -14.47 8.34 -34.44 -0.29 -14.76 16 7 H 0.05 1.50 7.07 -52.48 -0.37 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.09 1.68 1.24 -26.02 -0.03 1.64 16 15 H 0.05 0.96 4.67 -51.93 -0.24 0.71 16 16 C -0.14 -2.08 4.75 -25.18 -0.12 -2.20 16 17 C -0.12 -1.51 5.46 -27.24 -0.15 -1.66 16 18 C -0.12 -1.43 5.61 -27.42 -0.15 -1.59 16 19 C -0.15 -1.86 5.52 -29.39 -0.16 -2.02 16 20 C 0.06 0.89 6.11 33.83 0.21 1.10 16 21 O -0.35 -6.81 8.97 -32.82 -0.29 -7.10 16 22 H 0.07 1.40 6.20 -51.93 -0.32 1.07 16 23 H 0.04 0.65 6.56 -51.93 -0.34 0.30 16 24 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.04 0.65 7.08 -51.93 -0.37 0.29 16 26 H 0.07 1.52 6.83 -51.93 -0.35 1.16 16 27 H 0.02 0.72 7.40 -51.92 -0.38 0.33 16 28 H 0.02 0.42 6.22 -51.93 -0.32 0.10 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16 31 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 36 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -30.27 289.80 -7.79 -38.06 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.70 Total: -2.06 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -0.88 Total: -23.72 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.29 Total: -7.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.27 -7.79 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.825 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds