Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47608 * 2 1 4 4 H 1.09000 * 109.47038 * 305.30053 * 3 2 1 5 5 C 1.53005 * 109.46729 * 65.29239 * 3 2 1 6 6 C 1.50704 * 109.46844 * 187.81312 * 5 3 2 7 7 H 1.07997 * 120.00125 * 356.29677 * 6 5 3 8 8 C 1.37878 * 119.99562 * 176.02721 * 6 5 3 9 9 N 1.31511 * 120.00408 * 0.27192 * 8 6 5 10 10 Si 1.86801 * 119.99840 * 180.27499 * 8 6 5 11 11 H 1.48501 * 109.47008 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47061 * 119.99597 * 10 8 6 13 13 H 1.48496 * 109.47283 * 239.99730 * 10 8 6 14 14 C 1.52995 * 109.47508 * 185.29515 * 3 2 1 15 15 H 1.08998 * 109.85272 * 300.95341 * 14 3 2 16 16 C 1.51075 * 109.85532 * 61.98176 * 14 3 2 17 17 C 1.53475 * 111.29464 * 213.96681 * 16 14 3 18 18 C 1.54151 * 111.66126 * 319.24644 * 17 16 14 19 19 C 1.50979 * 112.80879 * 318.38526 * 18 17 16 20 20 C 1.54621 * 109.21957 * 92.32823 * 19 18 17 21 21 O 1.36317 * 111.08986 * 285.35187 * 20 19 18 22 22 H 1.08995 * 109.47251 * 174.78323 * 1 2 3 23 23 H 1.09000 * 109.47210 * 294.78778 * 1 2 3 24 24 H 1.09007 * 109.46970 * 54.78982 * 1 2 3 25 25 H 1.09003 * 109.47044 * 239.99966 * 2 1 3 26 26 H 1.08998 * 109.47287 * 120.00592 * 2 1 3 27 27 H 1.09004 * 109.46731 * 67.82042 * 5 3 2 28 28 H 1.08996 * 109.47538 * 307.81358 * 5 3 2 29 29 H 0.97003 * 120.00208 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.11519 * 334.43360 * 16 14 3 31 31 H 1.08997 * 109.11827 * 93.50553 * 16 14 3 32 32 H 1.09000 * 109.04300 * 198.67805 * 17 16 14 33 33 H 1.09004 * 108.98087 * 79.76319 * 17 16 14 34 34 H 1.08997 * 108.81204 * 197.53130 * 18 17 16 35 35 H 1.08994 * 108.73434 * 79.18176 * 18 17 16 36 36 H 1.09009 * 109.51236 * 332.40904 * 19 18 17 37 37 H 1.09000 * 109.55612 * 212.28156 * 19 18 17 38 38 H 1.08997 * 109.15817 * 164.93124 * 20 19 18 39 39 H 1.09005 * 109.10691 * 45.73610 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6013 1.9830 -0.8387 5 6 1.6416 2.1242 1.3105 6 6 1.9727 3.5924 1.2338 7 1 2.4766 3.9876 0.3642 8 6 1.6274 4.4321 2.2715 9 7 1.0139 3.9508 3.3305 10 14 2.0310 6.2533 2.1731 11 1 2.7180 6.5393 0.8880 12 1 0.7758 7.0433 2.2505 13 1 2.9203 6.6250 3.3027 14 6 3.5642 1.4444 -0.1331 15 1 4.0087 0.8908 0.6939 16 6 3.9653 0.8166 -1.4473 17 6 5.2874 0.0481 -1.3174 18 6 6.3053 0.8102 -0.4460 19 6 6.3233 2.2932 -0.7288 20 6 5.3464 3.0069 0.2340 21 8 4.0513 2.7931 -0.1340 22 1 -0.3633 -1.0233 -0.0934 23 1 -0.3633 0.4309 0.9330 24 1 -0.3633 0.5926 -0.8397 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.1891 1.6710 2.1369 28 1 0.5709 2.0013 1.4732 29 1 0.7706 4.5416 4.0604 30 1 3.1828 0.1289 -1.7679 31 1 4.0800 1.5996 -2.1968 32 1 5.7109 -0.1016 -2.3105 33 1 5.0896 -0.9239 -0.8652 34 1 7.2999 0.4049 -0.6315 35 1 6.0532 0.6555 0.6031 36 1 6.0144 2.4712 -1.7589 37 1 7.3309 2.6810 -0.5787 38 1 5.5498 4.0776 0.2212 39 1 5.4987 2.6261 1.2439 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = -74.769069 kcal Electronic energy + Delta-G solvation = -17060.258831 eV Core-core repulsion = 14580.873305 eV Total energy + Delta-G solvation = -2479.385526 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.45160 -35.74775 -34.37269 -32.39212 -31.37424 -28.84466 -26.70906 -25.26885 -23.76548 -22.23000 -21.14330 -19.45000 -18.92096 -16.46745 -15.70483 -15.41077 -14.79805 -14.62674 -14.37192 -13.76743 -13.36084 -13.08029 -12.49646 -12.26580 -12.06407 -11.88001 -11.43278 -11.26326 -11.05817 -10.91262 -10.81188 -10.54563 -10.40245 -10.27309 -10.08271 -10.02146 -9.66182 -9.42300 -9.07827 -8.80960 -8.33556 -8.08891 -5.78640 -3.73743 3.42304 3.49975 3.56408 4.47294 4.64868 5.00525 5.10828 5.18337 5.37758 5.44943 5.58746 5.61760 5.69044 5.78483 5.86515 5.88780 6.03062 6.06486 6.13242 6.16487 6.25625 6.32149 6.41508 6.44896 6.47697 6.54871 6.60501 6.70460 6.73411 6.82557 7.06538 7.27624 7.88834 7.94705 8.24398 8.55003 8.72969 9.38146 9.87178 11.33995 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.010960 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.661183 B = 2554.167570 C = 3581.876024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.081 4.081 4 H 0.065 0.935 5 C 0.028 3.972 6 C -0.486 4.486 7 H 0.077 0.923 8 C 0.046 3.954 9 N -0.908 5.908 10 Si 0.884 3.116 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.117 3.883 15 H 0.050 0.950 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.166 4.166 20 C 0.080 3.920 21 O -0.344 6.344 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.007 0.993 28 H 0.022 0.978 29 H 0.254 0.746 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 -7.420 -8.168 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.100 4.100 4 H 0.084 0.916 5 C -0.008 4.008 6 C -0.524 4.524 7 H 0.095 0.905 8 C -0.152 4.152 9 N -0.550 5.550 10 Si 0.713 3.287 11 H -0.197 1.197 12 H -0.216 1.216 13 H -0.216 1.216 14 C 0.060 3.940 15 H 0.068 0.932 16 C -0.192 4.192 17 C -0.153 4.153 18 C -0.160 4.160 19 C -0.204 4.204 20 C 0.001 3.999 21 O -0.261 6.261 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.096 -7.227 -8.065 12.947 hybrid contribution 0.573 0.803 0.211 1.009 sum 7.668 -6.424 -7.854 12.718 Atomic orbital electron populations 1.21762 0.96032 0.99993 1.02718 1.21613 0.95996 0.97359 1.00492 1.21356 0.91849 0.94287 1.02474 0.91639 1.19168 0.96664 0.95261 0.89740 1.21615 1.34605 0.92755 1.03473 0.90468 1.25020 0.96108 0.98130 0.95918 1.69988 1.42646 1.34702 1.07658 0.86657 0.77767 0.86537 0.77776 1.19679 1.21566 1.21585 1.21749 0.95279 0.82587 0.94391 0.93174 1.22229 0.96620 1.00255 1.00078 1.21840 0.95598 0.98582 0.99316 1.21444 0.98485 0.95620 1.00405 1.22390 1.00458 0.95717 1.01790 1.21609 0.83553 0.99535 0.95182 1.86649 1.25028 1.27012 1.87409 0.94024 0.91698 0.93084 0.93068 0.92677 0.97517 0.95952 0.93654 0.91077 0.91371 0.92772 0.92492 0.92851 0.92161 0.91358 0.92059 0.90062 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.56 37.15 0.36 -2.06 16 2 C -0.12 -1.98 5.25 -26.74 -0.14 -2.12 16 3 C -0.08 -1.65 1.69 -90.62 -0.15 -1.81 16 4 H 0.07 1.40 8.13 -51.93 -0.42 0.97 16 5 C 0.03 0.73 4.34 -27.88 -0.12 0.61 16 6 C -0.49 -13.72 7.93 -34.44 -0.27 -13.99 16 7 H 0.08 2.18 5.81 -52.49 -0.30 1.88 16 8 C 0.05 1.36 5.46 -17.82 -0.10 1.26 16 9 N -0.91 -27.87 13.29 55.43 0.74 -27.13 16 10 Si 0.88 22.45 29.54 -169.99 -5.02 17.43 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 C 0.12 2.19 1.81 -27.70 -0.05 2.14 16 15 H 0.05 0.96 6.68 -51.93 -0.35 0.62 16 16 C -0.15 -2.35 4.86 -27.45 -0.13 -2.48 16 17 C -0.12 -1.51 5.93 -25.88 -0.15 -1.66 16 18 C -0.12 -1.63 5.31 -27.15 -0.14 -1.77 16 19 C -0.17 -2.34 5.67 -26.89 -0.15 -2.50 16 20 C 0.08 1.42 6.39 38.01 0.24 1.66 16 21 O -0.34 -7.15 6.29 -20.76 -0.13 -7.28 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.19 6.66 -51.93 -0.35 0.84 16 24 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.05 0.75 5.97 -51.93 -0.31 0.44 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 28 H 0.02 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 1.01 5.58 -51.93 -0.29 0.72 16 31 H 0.07 1.08 7.31 -51.93 -0.38 0.70 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.86 6.60 -51.93 -0.34 0.52 16 36 H 0.07 0.98 7.16 -51.92 -0.37 0.61 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.03 0.57 7.68 -51.93 -0.40 0.17 16 LS Contribution 290.14 15.07 4.37 4.37 Total: -1.00 -30.26 290.14 -7.65 -37.91 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.78 Total: -2.57 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -0.82 Total: -22.72 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.74 Total: -27.13 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.13 Total: -7.28 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.26 -7.65 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.860 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds