Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 H 1.08998 * 109.46859 * 185.61152 * 3 2 1 5 5 C 1.53002 * 109.47463 * 305.61858 * 3 2 1 6 6 C 1.50698 * 109.46806 * 295.89703 * 5 3 2 7 7 H 1.07999 * 120.00029 * 4.78672 * 6 5 3 8 8 C 1.37877 * 119.99834 * 184.78987 * 6 5 3 9 9 N 1.31511 * 120.00155 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99833 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47088 * 60.00442 * 10 8 6 12 12 H 1.48505 * 109.46969 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47201 * 299.99955 * 10 8 6 14 14 C 1.53008 * 109.46490 * 65.61711 * 3 2 1 15 15 H 1.09001 * 109.58996 * 176.01347 * 14 3 2 16 16 C 1.54116 * 109.60007 * 55.70385 * 14 3 2 17 17 C 1.46279 * 112.19784 * 160.68062 * 16 14 3 18 18 C 1.54208 * 111.98949 * 61.41386 * 17 16 14 19 19 C 1.50619 * 109.06544 * 282.46800 * 18 17 16 20 20 C 1.53817 * 112.46498 * 90.33097 * 19 18 17 21 21 O 1.40324 * 109.59764 * 296.47527 * 14 3 2 22 22 H 1.08997 * 109.47328 * 172.37245 * 1 2 3 23 23 H 1.09004 * 109.47063 * 292.37396 * 1 2 3 24 24 H 1.08997 * 109.47460 * 52.37113 * 1 2 3 25 25 H 1.08994 * 109.47096 * 120.01029 * 2 1 3 26 26 H 1.09005 * 109.46654 * 240.00512 * 2 1 3 27 27 H 1.09002 * 109.47102 * 55.89414 * 5 3 2 28 28 H 1.08993 * 109.47160 * 175.89394 * 5 3 2 29 29 H 0.96996 * 120.00230 * 180.02562 * 9 8 6 30 30 H 1.08994 * 108.93704 * 281.38567 * 16 14 3 31 31 H 1.09008 * 108.93580 * 39.98330 * 16 14 3 32 32 H 1.08992 * 108.98385 * 182.06272 * 17 16 14 33 33 H 1.09001 * 108.97711 * 300.77445 * 17 16 14 34 34 H 1.08996 * 109.53621 * 42.34594 * 18 17 16 35 35 H 1.09000 * 109.53775 * 162.59359 * 18 17 16 36 36 H 1.09007 * 108.87960 * 211.09958 * 19 18 17 37 37 H 1.08997 * 108.88538 * 329.65608 * 19 18 17 38 38 H 1.09003 * 108.69673 * 78.90205 * 20 19 18 39 39 H 1.09005 * 108.69809 * 197.00105 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4441 -0.1005 5 6 1.4180 2.2035 -1.1726 6 6 1.8848 1.5955 -2.4701 7 1 2.4950 0.7044 -2.4602 8 6 1.5330 2.1769 -3.6698 9 7 0.7896 3.2617 -3.6818 10 14 2.1122 1.4236 -5.2781 11 1 1.5977 0.0349 -5.3879 12 1 1.6020 2.2313 -6.4150 13 1 3.5967 1.4055 -5.3099 14 6 1.6485 2.1217 1.3140 15 1 2.0711 3.1259 1.3464 16 6 2.1829 1.2974 2.5014 17 6 2.2507 2.0829 3.7335 18 6 0.8621 2.5905 4.1718 19 6 0.4788 3.7720 3.3200 20 6 -0.2932 3.3590 2.0553 21 8 0.2503 2.1931 1.4085 22 1 -0.3634 -1.0185 -0.1364 23 1 -0.3633 0.3912 0.9503 24 1 -0.3634 0.6274 -0.8138 25 1 1.8933 -0.5140 0.8898 26 1 1.8933 -0.5138 -0.8901 27 1 0.3316 2.1398 -1.1117 28 1 1.7237 3.2488 -1.1304 29 1 0.5418 3.6705 -4.5258 30 1 1.5263 0.4425 2.6625 31 1 3.1814 0.9335 2.2585 32 1 2.6681 1.4628 4.5268 33 1 2.9063 2.9387 3.5726 34 1 0.1269 1.7958 4.0452 35 1 0.8980 2.8921 5.2186 36 1 -0.1442 4.4447 3.9097 37 1 1.3841 4.3007 3.0221 38 1 -1.3288 3.1562 2.3287 39 1 -0.2754 4.1886 1.3485 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = -76.214789 kcal Electronic energy + Delta-G solvation = -17021.382360 eV Core-core repulsion = 14541.934143 eV Total energy + Delta-G solvation = -2479.448217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.46031 -35.66550 -34.40072 -32.55018 -31.28627 -28.64565 -26.86452 -25.62587 -23.59850 -22.64699 -20.41881 -20.24323 -18.27695 -16.72234 -16.03357 -15.38216 -14.87008 -14.37356 -14.17458 -13.82728 -13.20656 -13.07506 -12.78503 -12.30987 -12.01871 -11.91290 -11.52294 -11.26913 -10.98418 -10.84253 -10.58256 -10.57210 -10.47478 -10.37878 -10.22736 -9.79362 -9.71788 -9.34937 -9.09945 -8.78671 -8.54301 -8.20785 -5.89247 -3.89507 3.38590 3.42829 3.45433 4.30152 4.53939 4.82314 5.01909 5.03893 5.33010 5.38441 5.46362 5.54204 5.78017 5.81321 5.85508 5.95226 6.09944 6.16127 6.17926 6.18708 6.28571 6.28796 6.36695 6.45285 6.56099 6.60332 6.85525 6.91352 7.01080 7.17291 7.40219 7.49248 7.83699 7.97331 8.09634 8.20119 8.56605 9.17448 9.72810 11.22014 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041116 B = 0.007267 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.841429 B = 3851.937303 C = 4080.263799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.083 4.083 4 H 0.061 0.939 5 C 0.030 3.970 6 C -0.511 4.511 7 H 0.053 0.947 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.106 3.894 15 H 0.048 0.952 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.153 4.153 20 C 0.057 3.943 21 O -0.356 6.356 22 H 0.024 0.976 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.009 0.991 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -1.236 14.123 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.101 4.101 4 H 0.080 0.920 5 C -0.007 4.007 6 C -0.550 4.550 7 H 0.071 0.929 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.204 1.204 14 C 0.047 3.953 15 H 0.066 0.934 16 C -0.183 4.183 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.191 4.191 20 C -0.019 4.019 21 O -0.275 6.275 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.011 -1.244 13.928 13.983 hybrid contribution 0.549 -0.044 -0.851 1.013 sum 0.560 -1.288 13.077 13.152 Atomic orbital electron populations 1.21913 0.96036 0.99095 1.03378 1.21325 0.96607 0.96271 0.99504 1.21459 0.99066 0.95665 0.93924 0.92029 1.19145 0.96977 0.94268 0.90330 1.21255 1.31574 1.10940 0.91194 0.92855 1.24991 0.95461 0.95053 0.98952 1.69957 1.37449 1.20205 1.26081 0.86753 0.78970 0.79247 0.83565 1.20349 1.21453 1.20434 1.21951 0.81497 0.97483 0.94335 0.93415 1.21177 1.01662 0.99997 0.95437 1.20627 0.96823 1.00009 0.97912 1.21284 0.97531 0.98180 0.98219 1.21941 1.01176 0.98573 0.97377 1.22867 0.96952 0.89581 0.92547 1.87644 1.21097 1.40989 1.77734 0.95730 0.91692 0.91035 0.94521 0.92394 0.94968 0.97239 0.93195 0.91309 0.91794 0.92713 0.92636 0.91288 0.92481 0.91591 0.91967 0.90335 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.77 37.16 0.33 -2.59 16 2 C -0.10 -1.96 5.17 -26.73 -0.14 -2.10 16 3 C -0.08 -1.72 2.12 -90.61 -0.19 -1.92 16 4 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 5 C 0.03 0.77 3.86 -27.88 -0.11 0.66 16 6 C -0.51 -14.47 8.55 -34.44 -0.29 -14.76 16 7 H 0.05 1.47 6.84 -52.49 -0.36 1.11 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.11 1.87 1.95 -26.14 -0.05 1.81 16 15 H 0.05 0.86 6.99 -51.93 -0.36 0.50 16 16 C -0.15 -2.12 3.77 -29.34 -0.11 -2.23 16 17 C -0.12 -1.43 5.34 -29.30 -0.16 -1.59 16 18 C -0.11 -1.34 5.62 -27.29 -0.15 -1.50 16 19 C -0.15 -1.88 5.32 -27.50 -0.15 -2.02 16 20 C 0.06 0.85 6.67 37.58 0.25 1.10 16 21 O -0.36 -6.37 5.69 -33.69 -0.19 -6.56 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 1.22 5.74 -51.93 -0.30 0.93 16 24 H 0.07 1.64 5.82 -51.93 -0.30 1.34 16 25 H 0.04 0.63 6.49 -51.93 -0.34 0.29 16 26 H 0.06 1.22 6.97 -51.93 -0.36 0.86 16 27 H 0.03 0.89 5.54 -51.93 -0.29 0.60 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.07 1.03 7.36 -51.93 -0.38 0.65 16 31 H 0.06 0.91 7.98 -51.92 -0.41 0.49 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.68 7.60 -51.93 -0.39 0.29 16 34 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.79 6.83 -51.93 -0.35 0.44 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 287.85 15.07 4.34 4.34 Total: -1.00 -29.75 287.85 -7.79 -37.54 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.78 Total: -2.17 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -0.87 Total: -23.60 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.19 Total: -6.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.75 -7.79 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.677 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds