Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46542 * 2 1 4 4 H 1.08993 * 109.47627 * 304.15622 * 3 2 1 5 5 C 1.53002 * 109.46955 * 64.15536 * 3 2 1 6 6 C 1.50701 * 109.47071 * 62.06721 * 5 3 2 7 7 H 1.07998 * 120.00292 * 3.93047 * 6 5 3 8 8 C 1.37877 * 119.99944 * 183.92470 * 6 5 3 9 9 N 1.31516 * 119.99947 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00309 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47196 * 59.99638 * 10 8 6 12 12 H 1.48495 * 109.47445 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47004 * 300.00457 * 10 8 6 14 14 C 1.53002 * 109.46683 * 184.15013 * 3 2 1 15 15 H 1.08997 * 108.92222 * 297.96077 * 14 3 2 16 16 C 1.46286 * 108.93601 * 56.66794 * 14 3 2 17 17 C 1.54206 * 111.99178 * 182.11013 * 16 14 3 18 18 C 1.50616 * 109.06708 * 282.46792 * 17 16 14 19 19 C 1.53813 * 112.46542 * 90.32867 * 18 17 16 20 20 O 1.43993 * 113.41394 * 317.88784 * 19 18 17 21 21 C 1.40321 * 116.58062 * 317.89206 * 20 19 18 22 22 H 1.08998 * 109.46702 * 174.15794 * 1 2 3 23 23 H 1.08998 * 109.46804 * 294.15904 * 1 2 3 24 24 H 1.08994 * 109.47531 * 54.15876 * 1 2 3 25 25 H 1.08997 * 109.47190 * 120.00393 * 2 1 3 26 26 H 1.09004 * 109.47006 * 240.00780 * 2 1 3 27 27 H 1.09003 * 109.47057 * 182.06689 * 5 3 2 28 28 H 1.09001 * 109.47525 * 302.06650 * 5 3 2 29 29 H 0.97001 * 119.99681 * 179.97438 * 9 8 6 30 30 H 1.08998 * 108.97931 * 302.76182 * 16 14 3 31 31 H 1.09002 * 108.97421 * 61.55124 * 16 14 3 32 32 H 1.09000 * 109.53483 * 42.34765 * 17 16 14 33 33 H 1.08999 * 109.53318 * 162.50756 * 17 16 14 34 34 H 1.08999 * 108.88282 * 211.09932 * 18 17 16 35 35 H 1.09007 * 108.88288 * 329.65705 * 18 17 16 36 36 H 1.09005 * 108.69797 * 78.90089 * 19 18 17 37 37 H 1.09001 * 108.70030 * 197.00184 * 19 18 17 38 38 H 1.08995 * 109.60329 * 335.27179 * 21 20 19 39 39 H 1.09004 * 109.59379 * 214.80337 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6171 1.9774 -0.8503 5 6 1.6170 2.1329 1.2982 6 6 2.2430 1.4237 2.4714 7 1 2.9290 0.6063 2.3049 8 6 1.9400 1.8184 3.7572 9 7 1.1051 2.8141 3.9600 10 14 2.7165 0.9398 5.2114 11 1 4.1940 1.0676 5.1356 12 1 2.2306 1.5495 6.4752 13 1 2.3418 -0.4968 5.1793 14 6 3.5664 1.4439 -0.1044 15 1 3.9808 0.9389 0.7681 16 6 3.9605 0.7120 -1.3082 17 6 5.4930 0.6250 -1.4552 18 6 6.0142 1.9435 -1.9638 19 6 6.3794 2.9100 -0.8244 20 8 5.4192 2.9184 0.2487 21 6 4.0654 2.9020 -0.1200 22 1 -0.3633 -1.0223 -0.1046 23 1 -0.3633 0.4206 0.9377 24 1 -0.3634 0.6017 -0.8330 25 1 1.8934 -0.5139 0.8899 26 1 1.8934 -0.5137 -0.8901 27 1 1.9484 3.1712 1.2823 28 1 0.5314 2.0995 1.3906 29 1 0.8918 3.0915 4.8646 30 1 3.5512 -0.2970 -1.2595 31 1 3.5501 1.2190 -2.1815 32 1 5.9404 0.4056 -0.4858 33 1 5.7471 -0.1656 -2.1613 34 1 6.9015 1.7618 -2.5703 35 1 5.2502 2.4080 -2.5873 36 1 7.3510 2.6241 -0.4215 37 1 6.4540 3.9183 -1.2318 38 1 3.9543 3.3157 -1.1222 39 1 3.4864 3.4942 0.5887 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260638349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = -77.358223 kcal Electronic energy + Delta-G solvation = -16976.122780 eV Core-core repulsion = 14496.624980 eV Total energy + Delta-G solvation = -2479.497800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.37663 -36.42727 -34.02623 -32.33417 -31.41263 -28.70805 -26.24136 -25.72425 -23.98108 -22.40307 -20.34224 -20.09276 -18.81021 -16.31044 -16.00449 -15.64648 -14.78912 -14.52681 -13.97134 -13.57797 -13.34625 -13.08046 -12.91146 -12.50912 -12.00581 -11.72734 -11.49736 -11.36341 -10.96315 -10.71230 -10.59076 -10.51677 -10.43187 -10.26572 -10.10391 -9.88778 -9.82014 -9.63277 -8.92504 -8.73781 -8.56967 -8.19547 -5.89149 -3.88192 3.40631 3.44595 3.48136 4.33673 4.56092 4.89821 5.07792 5.23187 5.40744 5.43599 5.48691 5.65210 5.77390 5.82951 5.90682 5.93953 6.05406 6.11422 6.19206 6.19546 6.36137 6.38337 6.48957 6.54356 6.63613 6.68728 6.81929 6.87672 7.04709 7.10168 7.28421 7.38292 7.77598 7.88775 7.98535 8.11421 8.55499 9.16334 9.74309 11.22327 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.009688 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.410685 B = 2889.501836 C = 3520.856922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.075 4.075 4 H 0.038 0.962 5 C 0.023 3.977 6 C -0.501 4.501 7 H 0.057 0.943 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.884 3.116 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.279 1.279 14 C -0.106 4.106 15 H 0.089 0.911 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.151 4.151 19 C 0.062 3.938 20 O -0.378 6.378 21 C 0.075 3.925 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.022 0.978 29 H 0.258 0.742 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 -2.595 -11.340 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.094 4.094 4 H 0.056 0.944 5 C -0.013 4.013 6 C -0.539 4.539 7 H 0.075 0.925 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.712 3.288 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.205 1.205 14 C -0.125 4.125 15 H 0.107 0.893 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.189 4.189 19 C -0.015 4.015 20 O -0.297 6.297 21 C -0.002 4.002 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.287 -2.487 -11.018 12.927 hybrid contribution 0.303 -0.435 0.544 0.759 sum 6.589 -2.922 -10.474 12.715 Atomic orbital electron populations 1.21745 0.96948 0.99598 1.02047 1.21544 0.95165 0.97412 1.00629 1.21194 0.92993 0.95815 0.99405 0.94372 1.19238 0.96827 0.95030 0.90254 1.21162 1.25695 1.16471 0.90585 0.92529 1.24977 0.95337 0.95220 0.98875 1.69950 1.35188 1.27738 1.20999 0.86783 0.79896 0.79813 0.82281 1.20240 1.21562 1.20499 1.20625 0.96990 0.96452 0.98432 0.89271 1.20835 0.94437 1.01191 0.98752 1.21310 0.96847 0.95955 1.01456 1.21922 1.01327 0.97037 0.98571 1.22855 0.92710 0.97230 0.88710 1.87533 1.15724 1.94620 1.31828 1.22583 0.81460 0.96813 0.99325 0.94436 0.91471 0.94145 0.91089 0.94112 0.96812 0.96015 0.93224 0.91717 0.93286 0.91257 0.92553 0.91680 0.92047 0.90314 0.94088 0.94847 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.50 37.16 0.35 -2.26 16 2 C -0.11 -2.06 4.90 -26.73 -0.13 -2.19 16 3 C -0.08 -1.50 1.72 -90.62 -0.16 -1.66 16 4 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 5 C 0.02 0.57 4.22 -27.88 -0.12 0.46 16 6 C -0.50 -13.60 7.57 -34.44 -0.26 -13.86 16 7 H 0.06 1.52 5.69 -52.49 -0.30 1.22 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 10 Si 0.88 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C -0.11 -1.99 1.30 -93.22 -0.12 -2.11 16 15 H 0.09 1.93 6.29 -51.93 -0.33 1.61 16 16 C -0.11 -1.77 4.27 -29.29 -0.13 -1.89 16 17 C -0.12 -1.61 5.62 -27.29 -0.15 -1.76 16 18 C -0.15 -1.88 5.32 -27.50 -0.15 -2.02 16 19 C 0.06 0.87 6.67 37.58 0.25 1.12 16 20 O -0.38 -7.09 10.17 -33.68 -0.34 -7.44 16 21 C 0.07 1.40 5.68 37.75 0.21 1.61 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.37 6.79 -51.93 -0.35 1.02 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.47 6.71 -51.93 -0.35 1.12 16 26 H 0.04 0.67 6.05 -51.93 -0.31 0.35 16 27 H 0.01 0.36 6.14 -51.93 -0.32 0.05 16 28 H 0.02 0.58 6.57 -51.93 -0.34 0.24 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 0.98 5.89 -51.93 -0.31 0.67 16 31 H 0.05 0.72 7.59 -51.93 -0.39 0.32 16 32 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.76 6.83 -51.92 -0.35 0.41 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 39 H 0.10 2.16 5.70 -51.93 -0.30 1.87 16 LS Contribution 286.88 15.07 4.32 4.32 Total: -1.00 -29.12 286.88 -7.31 -36.42 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.51 Total: -1.05 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.49 Total: -23.07 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.34 Total: -7.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.12 -7.31 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.934 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds