Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46542 * 2 1 4 4 H 1.08993 * 109.47627 * 304.15622 * 3 2 1 5 5 C 1.53002 * 109.46955 * 64.15536 * 3 2 1 6 6 C 1.50701 * 109.47071 * 62.06721 * 5 3 2 7 7 H 1.07998 * 120.00292 * 3.93047 * 6 5 3 8 8 C 1.37877 * 119.99944 * 183.92470 * 6 5 3 9 9 N 1.31516 * 119.99947 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00309 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47196 * 59.99638 * 10 8 6 12 12 H 1.48495 * 109.47445 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47004 * 300.00457 * 10 8 6 14 14 C 1.53002 * 109.46683 * 184.15013 * 3 2 1 15 15 H 1.08997 * 108.92222 * 297.96077 * 14 3 2 16 16 C 1.46286 * 108.93601 * 56.66794 * 14 3 2 17 17 C 1.54206 * 111.99178 * 182.11013 * 16 14 3 18 18 C 1.50616 * 109.06708 * 282.46792 * 17 16 14 19 19 C 1.53813 * 112.46542 * 90.32867 * 18 17 16 20 20 O 1.43993 * 113.41394 * 317.88784 * 19 18 17 21 21 C 1.40321 * 116.58062 * 317.89206 * 20 19 18 22 22 H 1.08998 * 109.46702 * 174.15794 * 1 2 3 23 23 H 1.08998 * 109.46804 * 294.15904 * 1 2 3 24 24 H 1.08994 * 109.47531 * 54.15876 * 1 2 3 25 25 H 1.08997 * 109.47190 * 120.00393 * 2 1 3 26 26 H 1.09004 * 109.47006 * 240.00780 * 2 1 3 27 27 H 1.09003 * 109.47057 * 182.06689 * 5 3 2 28 28 H 1.09001 * 109.47525 * 302.06650 * 5 3 2 29 29 H 0.97001 * 119.99681 * 179.97438 * 9 8 6 30 30 H 1.08998 * 108.97931 * 302.76182 * 16 14 3 31 31 H 1.09002 * 108.97421 * 61.55124 * 16 14 3 32 32 H 1.09000 * 109.53483 * 42.34765 * 17 16 14 33 33 H 1.08999 * 109.53318 * 162.50756 * 17 16 14 34 34 H 1.08999 * 108.88282 * 211.09932 * 18 17 16 35 35 H 1.09007 * 108.88288 * 329.65705 * 18 17 16 36 36 H 1.09005 * 108.69797 * 78.90089 * 19 18 17 37 37 H 1.09001 * 108.70030 * 197.00184 * 19 18 17 38 38 H 1.08995 * 109.60329 * 335.27179 * 21 20 19 39 39 H 1.09004 * 109.59379 * 214.80337 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6171 1.9774 -0.8503 5 6 1.6170 2.1329 1.2982 6 6 2.2430 1.4237 2.4714 7 1 2.9290 0.6063 2.3049 8 6 1.9400 1.8184 3.7572 9 7 1.1051 2.8141 3.9600 10 14 2.7165 0.9398 5.2114 11 1 4.1940 1.0676 5.1356 12 1 2.2306 1.5495 6.4752 13 1 2.3418 -0.4968 5.1793 14 6 3.5664 1.4439 -0.1044 15 1 3.9808 0.9389 0.7681 16 6 3.9605 0.7120 -1.3082 17 6 5.4930 0.6250 -1.4552 18 6 6.0142 1.9435 -1.9638 19 6 6.3794 2.9100 -0.8244 20 8 5.4192 2.9184 0.2487 21 6 4.0654 2.9020 -0.1200 22 1 -0.3633 -1.0223 -0.1046 23 1 -0.3633 0.4206 0.9377 24 1 -0.3634 0.6017 -0.8330 25 1 1.8934 -0.5139 0.8899 26 1 1.8934 -0.5137 -0.8901 27 1 1.9484 3.1712 1.2823 28 1 0.5314 2.0995 1.3906 29 1 0.8918 3.0915 4.8646 30 1 3.5512 -0.2970 -1.2595 31 1 3.5501 1.2190 -2.1815 32 1 5.9404 0.4056 -0.4858 33 1 5.7471 -0.1656 -2.1613 34 1 6.9015 1.7618 -2.5703 35 1 5.2502 2.4080 -2.5873 36 1 7.3510 2.6241 -0.4215 37 1 6.4540 3.9183 -1.2318 38 1 3.9543 3.3157 -1.1222 39 1 3.4864 3.4942 0.5887 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260638349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = -93.906400 kcal Electronic energy + Delta-G solvation = -16976.840363 eV Core-core repulsion = 14496.624980 eV Total energy + Delta-G solvation = -2480.215383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75801 -37.96202 -35.37030 -34.33135 -32.77747 -30.44444 -27.78589 -27.10246 -25.71894 -24.02604 -21.78959 -21.19340 -20.55277 -18.02950 -17.58233 -17.06418 -16.53129 -16.11357 -15.47023 -14.94893 -14.80976 -14.42245 -14.30647 -14.19381 -13.53799 -13.29764 -13.05581 -12.85370 -12.74042 -12.44487 -12.27331 -12.19020 -11.85065 -11.64949 -11.54343 -11.48098 -11.21899 -11.10911 -10.65459 -10.54647 -10.43414 -10.01869 -8.09728 -6.13701 1.38984 1.41597 1.48078 2.45835 3.06753 3.24745 3.81972 4.00243 4.06836 4.11157 4.12964 4.35990 4.42703 4.55228 4.64079 4.66498 4.75926 4.81915 4.91814 4.94890 5.04083 5.04868 5.16549 5.21663 5.25756 5.32718 5.39013 5.43974 5.54405 5.57836 5.62050 5.69769 5.81051 5.88102 6.00748 6.42137 6.65516 7.00407 7.51835 9.02174 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.009688 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.410685 B = 2889.501836 C = 3520.856922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.070 4.070 4 H 0.054 0.946 5 C 0.029 3.971 6 C -0.499 4.499 7 H 0.057 0.943 8 C -0.002 4.002 9 N -0.936 5.936 10 Si 0.945 3.055 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.269 1.269 14 C -0.094 4.094 15 H 0.052 0.948 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.147 4.147 19 C 0.051 3.949 20 O -0.410 6.410 21 C 0.080 3.920 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.075 0.925 27 H -0.011 1.011 28 H -0.005 1.005 29 H 0.257 0.743 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -3.967 -13.459 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.008 4.008 6 C -0.538 4.538 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.578 5.578 10 Si 0.771 3.229 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.113 4.113 15 H 0.071 0.929 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.184 4.184 19 C -0.025 4.025 20 O -0.330 6.330 21 C 0.004 3.996 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.007 0.993 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.608 -3.871 -13.148 15.675 hybrid contribution -0.071 0.032 1.171 1.174 sum 7.537 -3.838 -11.976 14.662 Atomic orbital electron populations 1.21699 0.96398 1.01149 1.00749 1.21508 0.95647 0.96211 1.01002 1.21114 0.94369 0.96458 0.96961 0.92762 1.19117 0.94871 0.94142 0.92634 1.21486 1.24869 1.15975 0.91422 0.92466 1.25794 0.96101 0.96127 1.01833 1.70083 1.36911 1.29449 1.21401 0.85798 0.78924 0.79117 0.79029 1.19961 1.21309 1.19359 1.20486 0.95480 0.96493 0.98863 0.92920 1.20787 0.96189 1.00884 0.97238 1.21296 0.95139 0.97599 1.01278 1.21904 1.02833 0.95762 0.97923 1.23165 0.91931 0.98871 0.88528 1.87473 1.16017 1.94813 1.34661 1.22357 0.81569 0.96415 0.99306 0.92024 0.95091 0.92536 0.93602 0.90693 0.99259 0.98645 0.93380 0.91202 0.91587 0.93217 0.89862 0.88641 0.91543 0.89130 0.92688 0.92398 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.50 71.98 0.68 -4.27 16 2 C -0.11 -3.85 4.90 30.60 0.15 -3.70 16 3 C -0.07 -2.80 1.72 -10.79 -0.02 -2.82 16 4 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 5 C 0.03 1.51 4.22 29.85 0.13 1.63 16 6 C -0.50 -28.04 7.57 25.60 0.19 -27.84 16 7 H 0.06 3.15 5.69 -2.91 -0.02 3.14 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 10 Si 0.95 46.07 29.54 68.60 2.03 48.10 16 11 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 14 C -0.09 -3.48 1.30 -12.48 -0.02 -3.49 16 15 H 0.05 2.32 6.29 -2.39 -0.02 2.30 16 16 C -0.11 -3.18 4.27 28.93 0.12 -3.05 16 17 C -0.12 -2.77 5.62 30.23 0.17 -2.60 16 18 C -0.15 -3.10 5.32 30.10 0.16 -2.94 16 19 C 0.05 1.32 6.67 72.26 0.48 1.80 16 20 O -0.41 -15.31 10.17 -143.44 -1.46 -16.77 16 21 C 0.08 3.01 5.68 72.36 0.41 3.42 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.03 1.27 6.79 -2.39 -0.02 1.26 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 1.88 6.71 -2.39 -0.02 1.86 16 26 H 0.07 2.22 6.05 -2.39 -0.01 2.21 16 27 H -0.01 -0.60 6.14 -2.39 -0.01 -0.62 16 28 H 0.00 -0.27 6.57 -2.39 -0.02 -0.29 16 29 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 30 H 0.07 1.88 5.89 -2.39 -0.01 1.86 16 31 H 0.07 1.65 7.59 -2.39 -0.02 1.63 16 32 H 0.05 1.39 7.82 -2.39 -0.02 1.38 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.36 6.83 -2.38 -0.02 1.35 16 36 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.83 6.98 -2.39 -0.02 1.82 16 39 H 0.06 2.74 5.70 -2.39 -0.01 2.73 16 Total: -1.00 -65.24 286.88 4.79 -60.45 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.01 Total: 9.58 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 2.93 Total: -43.53 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.84 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.46 Total: -16.77 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -65.24 4.79 -60.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.457 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds