Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 H 1.09000 * 109.47279 * 305.53212 * 3 2 1 5 5 C 1.53001 * 109.47165 * 65.52617 * 3 2 1 6 6 C 1.50701 * 109.47082 * 65.08075 * 5 3 2 7 7 H 1.08002 * 119.99880 * 355.52134 * 6 5 3 8 8 C 1.37874 * 120.00465 * 175.51975 * 6 5 3 9 9 N 1.31516 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00213 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47264 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47086 * 60.00338 * 10 8 6 13 13 H 1.48497 * 109.47592 * 300.00214 * 10 8 6 14 14 C 1.52998 * 109.47334 * 185.52762 * 3 2 1 15 15 H 1.08993 * 109.54158 * 305.94327 * 14 3 2 16 16 C 1.54201 * 109.53901 * 185.77431 * 14 3 2 17 17 C 1.46283 * 111.98906 * 162.60907 * 16 14 3 18 18 C 1.54119 * 112.20399 * 61.41188 * 17 16 14 19 19 O 1.40316 * 108.70688 * 280.44267 * 18 17 16 20 20 C 1.43996 * 116.57910 * 95.04021 * 19 18 17 21 21 C 1.50623 * 109.53334 * 66.10797 * 14 3 2 22 22 H 1.08998 * 109.47046 * 183.07114 * 1 2 3 23 23 H 1.09003 * 109.46912 * 303.06900 * 1 2 3 24 24 H 1.08994 * 109.46990 * 63.07038 * 1 2 3 25 25 H 1.08996 * 109.47150 * 239.99779 * 2 1 3 26 26 H 1.09002 * 109.46821 * 119.99605 * 2 1 3 27 27 H 1.08995 * 109.47180 * 305.08200 * 5 3 2 28 28 H 1.08998 * 109.47327 * 185.07639 * 5 3 2 29 29 H 0.97007 * 119.99586 * 359.97438 * 9 8 6 30 30 H 1.09000 * 108.98433 * 283.25472 * 16 14 3 31 31 H 1.09007 * 108.97983 * 41.96156 * 16 14 3 32 32 H 1.08999 * 108.93760 * 182.12127 * 17 16 14 33 33 H 1.09007 * 108.93736 * 300.71346 * 17 16 14 34 34 H 1.08999 * 109.59453 * 40.21236 * 18 17 16 35 35 H 1.09002 * 109.59402 * 160.67676 * 18 17 16 36 36 H 1.08996 * 108.69082 * 78.91049 * 20 19 18 37 37 H 1.09001 * 108.69549 * 197.01171 * 20 19 18 38 38 H 1.08996 * 108.88633 * 330.96932 * 21 14 3 39 39 H 1.09000 * 108.88791 * 89.43427 * 21 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9842 -0.8363 5 6 1.6467 2.1226 1.3129 6 6 2.3571 1.4503 2.4594 7 1 2.9656 0.5763 2.2797 8 6 2.2305 1.9510 3.7377 9 7 1.4892 3.0151 3.9567 10 14 3.1105 1.1173 5.1589 11 1 2.8139 1.8439 6.4195 12 1 4.5747 1.1319 4.9114 13 1 2.6423 -0.2871 5.2757 14 6 3.5637 1.4447 -0.1389 15 1 4.0014 0.8160 0.6363 16 6 4.0927 2.8859 0.0062 17 6 5.5274 2.9168 0.2899 18 6 6.3587 2.2815 -0.8417 19 8 6.3084 0.8856 -0.7080 20 6 5.3086 0.1997 -1.4848 21 6 3.9466 0.9125 -1.4950 22 1 -0.3633 -1.0262 0.0551 23 1 -0.3633 0.5608 0.8612 24 1 -0.3633 0.4654 -0.9162 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5692 2.0414 1.4555 28 1 1.9302 3.1744 1.2765 29 1 1.0319 3.4478 3.2187 30 1 3.9029 3.4282 -0.9201 31 1 3.5598 3.3789 0.8193 32 1 5.8401 3.9528 0.4198 33 1 5.7167 2.3733 1.2157 34 1 5.9440 2.5716 -1.8071 35 1 7.3928 2.6187 -0.7692 36 1 5.6644 0.1100 -2.5111 37 1 5.1727 -0.8008 -1.0741 38 1 3.1825 0.2096 -1.8267 39 1 3.9898 1.7424 -2.2004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260641672.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = -81.957370 kcal Electronic energy + Delta-G solvation = -17096.428866 eV Core-core repulsion = 14616.731632 eV Total energy + Delta-G solvation = -2479.697234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.39523 -36.74476 -33.45840 -32.73460 -31.63991 -28.83337 -25.93658 -25.79264 -23.59762 -22.74642 -20.37593 -19.98131 -19.00267 -16.47793 -16.25617 -15.72829 -14.84742 -14.41743 -13.86574 -13.73829 -13.59714 -13.12549 -12.80743 -12.48696 -12.11344 -11.69739 -11.39833 -11.29624 -11.05870 -10.86700 -10.65404 -10.48615 -10.38748 -10.11913 -10.04352 -9.94494 -9.78824 -9.43231 -9.05867 -8.96836 -8.28511 -8.20778 -6.24223 -3.91424 3.49296 3.50700 3.68587 4.11036 4.62086 5.02999 5.27446 5.30400 5.35826 5.45654 5.51402 5.58600 5.68235 5.75702 5.86600 5.88929 5.99239 6.06058 6.17237 6.31201 6.33174 6.44226 6.48767 6.50833 6.66313 6.77264 6.80078 6.87878 7.02743 7.05823 7.15760 7.34289 7.56544 7.62611 7.67723 8.35811 8.58648 9.00655 9.78248 11.15471 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.010703 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.957625 B = 2615.353909 C = 3290.325247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.068 4.068 4 H 0.036 0.964 5 C 0.010 3.990 6 C -0.580 4.580 7 H 0.050 0.950 8 C 0.013 3.987 9 N -0.919 5.919 10 Si 1.060 2.940 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.290 1.290 14 C -0.063 4.063 15 H 0.084 0.916 16 C -0.114 4.114 17 C -0.145 4.145 18 C 0.069 3.931 19 O -0.386 6.386 20 C 0.067 3.933 21 C -0.155 4.155 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.006 0.994 28 H 0.010 0.990 29 H 0.267 0.733 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -3.178 -10.798 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.087 4.087 4 H 0.055 0.945 5 C -0.026 4.026 6 C -0.619 4.619 7 H 0.068 0.932 8 C -0.190 4.190 9 N -0.556 5.556 10 Si 0.889 3.111 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.216 1.216 14 C -0.082 4.082 15 H 0.103 0.897 16 C -0.151 4.151 17 C -0.182 4.182 18 C -0.008 4.008 19 O -0.304 6.304 20 C -0.009 4.009 21 C -0.192 4.192 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.024 0.976 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.719 -3.199 -9.046 11.170 hybrid contribution -0.500 0.112 -1.883 1.952 sum 5.220 -3.087 -10.929 12.499 Atomic orbital electron populations 1.21769 0.97009 1.00297 1.01394 1.21529 0.95046 0.97531 1.00738 1.21060 0.93652 0.95364 0.98621 0.94522 1.19377 0.95894 0.95313 0.92033 1.21981 1.31821 1.14650 0.93412 0.93153 1.25686 0.96961 0.96310 1.00014 1.70788 1.29638 1.19615 1.35573 0.83666 0.75903 0.75408 0.76128 1.21048 1.21483 1.21647 1.20736 0.96033 0.96285 0.95106 0.89724 1.20659 0.95508 0.97420 1.01550 1.21089 0.96580 1.00412 1.00143 1.22343 0.99289 0.81499 0.97650 1.87424 1.54810 1.19537 1.68679 1.22870 0.87903 0.95918 0.94188 1.22175 0.96733 1.00617 0.99715 0.94088 0.91731 0.94215 0.94100 0.91032 0.97567 0.97154 0.92281 0.94343 0.89699 0.92322 0.90737 0.93676 0.90694 0.94183 0.89944 0.90764 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.75 37.16 0.36 -2.22 16 2 C -0.11 -2.06 5.17 -26.73 -0.14 -2.20 16 3 C -0.07 -1.37 1.69 -90.62 -0.15 -1.52 16 4 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 5 C 0.01 0.25 3.40 -27.88 -0.09 0.16 16 6 C -0.58 -15.64 7.54 -34.44 -0.26 -15.90 16 7 H 0.05 1.36 5.74 -52.49 -0.30 1.06 16 8 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 9 N -0.92 -27.90 13.65 55.43 0.76 -27.15 16 10 Si 1.06 25.55 29.90 -169.99 -5.08 20.47 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C -0.06 -1.18 1.01 -91.18 -0.09 -1.27 16 15 H 0.08 1.82 6.33 -51.93 -0.33 1.49 16 16 C -0.11 -2.11 4.59 -29.30 -0.13 -2.25 16 17 C -0.14 -2.44 5.47 -29.34 -0.16 -2.60 16 18 C 0.07 1.02 6.38 37.74 0.24 1.26 16 19 O -0.39 -6.34 10.17 -33.67 -0.34 -6.69 16 20 C 0.07 0.97 6.67 37.54 0.25 1.22 16 21 C -0.15 -2.35 4.75 -27.54 -0.13 -2.48 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.28 6.35 -51.93 -0.33 0.95 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 26 H 0.07 1.48 6.73 -51.93 -0.35 1.13 16 27 H 0.01 0.16 6.29 -51.93 -0.33 -0.16 16 28 H 0.01 0.27 5.95 -51.93 -0.31 -0.04 16 29 H 0.27 8.08 7.20 -40.82 -0.29 7.79 16 30 H 0.04 0.65 7.60 -51.93 -0.39 0.25 16 31 H 0.08 1.85 5.49 -51.93 -0.28 1.57 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 34 H 0.04 0.61 6.98 -51.93 -0.36 0.24 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.07 5.77 -51.93 -0.30 0.77 16 39 H 0.05 0.77 6.85 -51.93 -0.36 0.41 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -29.23 285.46 -7.21 -36.44 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.43 Total: 0.15 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -0.41 Total: -27.53 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.76 Total: -27.15 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.34 Total: -6.69 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.23 -7.21 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641672.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.518 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds