Wall clock time and date at job start Mon Mar 30 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47467 * 2 1 4 4 H 1.09004 * 109.46989 * 304.19633 * 3 2 1 5 5 C 1.53005 * 109.47232 * 64.19218 * 3 2 1 6 6 C 1.50694 * 109.47034 * 61.93800 * 5 3 2 7 7 H 1.08003 * 120.00059 * 3.92160 * 6 5 3 8 8 C 1.37874 * 120.00224 * 183.91664 * 6 5 3 9 9 N 1.31518 * 120.00169 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00236 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47007 * 90.00259 * 10 8 6 12 12 H 1.48503 * 109.47157 * 210.00351 * 10 8 6 13 13 H 1.48497 * 109.47193 * 330.00173 * 10 8 6 14 14 C 1.52992 * 109.47423 * 184.19503 * 3 2 1 15 15 H 1.09003 * 108.94114 * 298.06954 * 14 3 2 16 16 C 1.46286 * 108.96397 * 56.83171 * 14 3 2 17 17 C 1.54199 * 112.00069 * 181.60790 * 16 14 3 18 18 C 1.50476 * 108.74021 * 282.07989 * 17 16 14 19 19 O 1.44186 * 112.70330 * 92.68391 * 18 17 16 20 20 C 1.44183 * 116.92901 * 318.46811 * 19 18 17 21 21 C 1.50419 * 112.77335 * 318.48142 * 20 19 18 22 22 H 1.08998 * 109.47358 * 174.16100 * 1 2 3 23 23 H 1.09003 * 109.47546 * 294.15625 * 1 2 3 24 24 H 1.08997 * 109.47202 * 54.15758 * 1 2 3 25 25 H 1.08998 * 109.46795 * 239.99916 * 2 1 3 26 26 H 1.09003 * 109.47213 * 120.00104 * 2 1 3 27 27 H 1.08997 * 109.47523 * 181.94465 * 5 3 2 28 28 H 1.09008 * 109.46832 * 301.94185 * 5 3 2 29 29 H 0.96993 * 120.00321 * 179.97438 * 9 8 6 30 30 H 1.08994 * 108.95779 * 302.23347 * 16 14 3 31 31 H 1.09002 * 108.95563 * 60.98375 * 16 14 3 32 32 H 1.09000 * 109.59183 * 41.94780 * 17 16 14 33 33 H 1.08999 * 109.58910 * 162.37601 * 17 16 14 34 34 H 1.08997 * 108.86793 * 331.84954 * 18 17 16 35 35 H 1.09003 * 108.77529 * 213.45047 * 18 17 16 36 36 H 1.08999 * 108.82709 * 197.63086 * 20 19 18 37 37 H 1.09003 * 108.73449 * 79.26508 * 20 19 18 38 38 H 1.09004 * 109.58490 * 332.78696 * 21 20 19 39 39 H 1.08999 * 109.70388 * 212.43148 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6166 1.9775 -0.8500 5 6 1.6180 2.1327 1.2987 6 6 2.2420 1.4212 2.4714 7 1 2.9263 0.6024 2.3045 8 6 1.9396 1.8156 3.7574 9 7 1.1060 2.8123 3.9608 10 14 2.7137 0.9341 5.2112 11 1 3.9902 1.6015 5.5721 12 1 1.7858 0.9808 6.3697 13 1 2.9804 -0.4807 4.8474 14 6 3.5663 1.4437 -0.1055 15 1 3.9816 0.9368 0.7656 16 6 3.9600 0.7157 -1.3117 17 6 5.4924 0.6397 -1.4662 18 6 5.9920 1.9610 -1.9849 19 8 6.3824 2.8617 -0.9289 20 6 5.5288 2.9162 0.2318 21 6 4.0663 2.9023 -0.1198 22 1 -0.3634 -1.0223 -0.1045 23 1 -0.3634 0.4205 0.9377 24 1 -0.3633 0.6017 -0.8330 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9515 3.1702 1.2837 28 1 0.5322 2.1013 1.3905 29 1 0.8930 3.0895 4.8655 30 1 3.5585 -0.2963 -1.2614 31 1 3.5407 1.2199 -2.1824 32 1 5.9474 0.4299 -0.4982 33 1 5.7498 -0.1498 -2.1722 34 1 5.2033 2.4297 -2.5733 35 1 6.8521 1.7820 -2.6302 36 1 5.7483 3.8279 0.7874 37 1 5.7459 2.0571 0.8667 38 1 3.9255 3.3272 -1.1137 39 1 3.5073 3.4875 0.6103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260641674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:50 Heat of formation + Delta-G solvation = -77.950728 kcal Electronic energy + Delta-G solvation = -16977.854575 eV Core-core repulsion = 14498.331082 eV Total energy + Delta-G solvation = -2479.523493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45366 -36.59418 -33.39990 -32.20440 -31.83089 -28.62762 -27.27794 -25.24497 -23.73200 -22.57349 -20.32925 -19.90115 -18.91207 -16.29898 -16.17816 -15.67800 -14.79969 -14.46250 -13.94056 -13.66237 -13.47595 -13.05532 -12.64060 -12.48877 -12.02646 -11.78616 -11.55325 -11.36548 -11.01212 -10.99250 -10.65454 -10.57251 -10.51955 -10.26722 -10.08320 -9.92083 -9.83707 -9.20994 -9.13803 -8.92126 -8.67826 -8.28902 -5.96540 -3.96416 3.31866 3.39225 3.41277 4.11438 4.48021 5.02026 5.10392 5.26184 5.33291 5.39993 5.53175 5.72730 5.78157 5.85594 5.92594 5.98689 6.05655 6.08428 6.15088 6.28580 6.37763 6.42785 6.51192 6.53159 6.59413 6.73901 6.81512 6.84660 7.00911 7.03773 7.23998 7.33416 7.59602 7.76083 7.85871 8.04936 8.48765 9.09340 9.66393 11.14734 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.009571 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.786841 B = 2924.678484 C = 3558.415633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.076 4.076 4 H 0.038 0.962 5 C 0.023 3.977 6 C -0.504 4.504 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.882 3.118 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.079 4.079 15 H 0.080 0.920 16 C -0.117 4.117 17 C -0.156 4.156 18 C 0.068 3.932 19 O -0.405 6.405 20 C 0.066 3.934 21 C -0.146 4.146 22 H 0.036 0.964 23 H 0.066 0.934 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.015 0.985 28 H 0.021 0.979 29 H 0.258 0.742 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 -3.311 -9.949 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.095 4.095 4 H 0.057 0.943 5 C -0.013 4.013 6 C -0.542 4.542 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.711 3.289 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.097 4.097 15 H 0.098 0.902 16 C -0.155 4.155 17 C -0.193 4.193 18 C -0.009 4.009 19 O -0.325 6.325 20 C -0.009 4.009 21 C -0.184 4.184 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.443 -3.108 -9.817 11.648 hybrid contribution 0.076 -0.617 0.981 1.161 sum 5.520 -3.725 -8.836 11.065 Atomic orbital electron populations 1.21742 0.96951 0.99601 1.02041 1.21556 0.95221 0.97530 1.00558 1.21234 0.93197 0.95586 0.99457 0.94318 1.19231 0.96795 0.95113 0.90183 1.21208 1.26003 1.16344 0.90631 0.92560 1.24991 0.95350 0.95223 0.98863 1.69956 1.35049 1.27673 1.20951 0.86750 0.79173 0.80186 0.82836 1.20805 1.21429 1.20021 1.20187 0.97116 0.94736 0.97681 0.90171 1.20880 0.94038 1.01348 0.99200 1.21972 0.97479 0.97580 1.02297 1.22218 0.99518 0.89639 0.89498 1.88173 1.51614 1.63338 1.29372 1.22340 0.90367 1.01701 0.86516 1.22001 0.95579 0.98458 1.02339 0.94443 0.91508 0.94128 0.94135 0.91164 0.96704 0.96095 0.93202 0.91597 0.92823 0.90851 0.91381 0.93504 0.90608 0.90040 0.93054 0.92413 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.50 37.15 0.35 -2.23 16 2 C -0.11 -2.03 4.90 -26.74 -0.13 -2.17 16 3 C -0.08 -1.48 1.72 -90.62 -0.16 -1.64 16 4 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.02 0.57 4.21 -27.88 -0.12 0.45 16 6 C -0.50 -13.19 7.57 -34.44 -0.26 -13.45 16 7 H 0.06 1.45 5.69 -52.48 -0.30 1.15 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 10 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 C -0.08 -1.40 1.16 -93.19 -0.11 -1.50 16 15 H 0.08 1.59 5.73 -51.93 -0.30 1.30 16 16 C -0.12 -1.73 4.25 -29.30 -0.12 -1.86 16 17 C -0.16 -2.07 5.61 -27.36 -0.15 -2.22 16 18 C 0.07 0.92 6.27 35.90 0.22 1.14 16 19 O -0.40 -6.63 10.88 -35.23 -0.38 -7.02 16 20 C 0.07 1.11 6.27 35.87 0.22 1.34 16 21 C -0.15 -2.56 4.90 -27.39 -0.13 -2.70 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.35 6.79 -51.93 -0.35 0.99 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.65 6.06 -51.93 -0.31 0.33 16 26 H 0.07 1.42 6.70 -51.93 -0.35 1.07 16 27 H 0.01 0.38 6.15 -51.93 -0.32 0.06 16 28 H 0.02 0.55 6.58 -51.92 -0.34 0.21 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.07 0.95 5.92 -51.93 -0.31 0.65 16 31 H 0.05 0.76 7.55 -51.93 -0.39 0.37 16 32 H 0.07 1.06 7.14 -51.93 -0.37 0.69 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.63 6.67 -51.93 -0.35 0.28 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.88 6.66 -51.93 -0.35 0.54 16 38 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 39 H 0.09 1.89 5.73 -51.93 -0.30 1.59 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -28.07 284.52 -7.24 -35.30 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.38 Total: 0.02 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -0.48 Total: -23.38 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.74 Total: -25.47 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.38 Total: -7.02 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.07 -7.24 -35.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.647 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds